Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:105789360-108389673

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236 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Papola 12 105784694 to 105838944 54250 + protein coding gene poly (A) polymerase alpha
Tssr114923 12 105837231 to 105837254 23 + TSS region transcription start site region 114923
Tssr114924 12 105837412 to 105837461 49 + TSS region transcription start site region 114924
Tssr114925 12 105837990 to 105838007 17 + TSS region transcription start site region 114925
Cpgi5049 12 105862740 to 105862924 184 CpG island CpG island 5049
Tssr114926 12 105862747 to 105862749 2 + TSS region transcription start site region 114926
Gm48807 12 105864262 to 105874745 10483 + lincRNA gene predicted gene, 48807
Gm22120 12 105865724 to 105865793 69 - miRNA gene predicted gene, 22120
Cpgi5050 12 105869857 to 105870056 199 CpG island CpG island 5050
Cpgi5051 12 105875294 to 105875482 188 CpG island CpG island 5051
Gm19554 12 105899841 to 105902150 2309 + lincRNA gene predicted gene, 19554
Tssr114927 12 105899856 to 105899866 10 + TSS region transcription start site region 114927
Gm32370 12 105902119 to 105906788 4669 - lncRNA gene predicted gene, 32370
Gm46377 12 105936786 to 105943590 6804 - lncRNA gene predicted gene, 46377
Cpgi5052 12 105962689 to 105963437 748 CpG island CpG island 5052
Cpgi5053 12 105967950 to 105968218 268 CpG island CpG island 5053
Cpgi5054 12 105989672 to 105989886 214 CpG island CpG island 5054
Cpgi5055 12 106008414 to 106008596 182 CpG island CpG island 5055
Cpgi5056 12 106010034 to 106010983 949 CpG island CpG island 5056
Tssr114928 12 106010204 to 106010225 21 + TSS region transcription start site region 114928
Vrk1 12 106010228 to 106077426 67198 + protein coding gene vaccinia related kinase 1
Tssr114929 12 106010275 to 106010339 64 + TSS region transcription start site region 114929
Tssr114930 12 106030703 to 106030725 22 + TSS region transcription start site region 114930
Tssr117613 12 106034384 to 106034423 39 - TSS region transcription start site region 117613
Cpgi5057 12 106083912 to 106084101 189 CpG island CpG island 5057
Gm46378 12 106085303 to 106088657 3354 + lincRNA gene predicted gene, 46378
Gm32723 12 106094506 to 106096641 2135 + lncRNA gene predicted gene, 32723
Gm32635 12 106094823 to 106098971 4148 - lincRNA gene predicted gene, 32635
Cpgi5058 12 106094881 to 106095085 204 CpG island CpG island 5058
Cpgi5059 12 106098725 to 106099098 373 CpG island CpG island 5059
Cpgi5060 12 106124066 to 106124562 496 CpG island CpG island 5060
Gm47646 12 106131978 to 106145400 13422 - lincRNA gene predicted gene, 47646
1700008O09Rik 12 106139778 to 106140107 329 unclassified gene RIKEN cDNA 1700008O09 gene
Gm32776 12 106146889 to 106151270 4381 + lncRNA gene predicted gene, 32776
Tssr114931 12 106147864 to 106147907 43 + TSS region transcription start site region 114931
4933424L07Rik 12 106158776 to 106160127 1351 unclassified gene RIKEN cDNA 4933424L07 gene
Cpgi5061 12 106174140 to 106174521 381 CpG island CpG island 5061
Gm24986 12 106221075 to 106221206 131 + snoRNA gene predicted gene, 24986
D12Mit115.1 12 106253360 to 106253525 165 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 115.1
D12Mit115 12 106253502 to 106253628 126 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 115
D12Mit50 12 106289933 to 106290064 131 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 50
Cpgi5062 12 106310857 to 106311277 420 CpG island CpG island 5062
Gm17032 12 106327368 to 106330821 3453 + lincRNA gene predicted gene 17032
Tssr114932 12 106408422 to 106408461 39 + TSS region transcription start site region 114932
Gm32830 12 106408442 to 106412733 4291 + lncRNA gene predicted gene, 32830
1700121N20Rik 12 106442653 to 106447666 5013 - lincRNA gene RIKEN cDNA 1700121N20 gene
Tssr117614 12 106444772 to 106444781 9 - TSS region transcription start site region 117614
4930564B12Rik 12 106447831 to 106449368 1537 unclassified gene RIKEN cDNA 4930564B12 gene
Tssr114933 12 106459134 to 106459157 23 + TSS region transcription start site region 114933
Gm3191 12 106459150 to 106459495 345 + pseudogene predicted gene 3191
D12Mit261 12 106469176 to 106469271 95 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 261
Cpgi5063 12 106474672 to 106475128 456 CpG island CpG island 5063
Cpgi5064 12 106478309 to 106478691 382 CpG island CpG island 5064
Gm32876 12 106479244 to 106492024 12780 + lncRNA gene predicted gene, 32876
Gm17031 12 106508242 to 106509910 1668 + pseudogene predicted gene 17031
Cpgi5065 12 106514385 to 106514730 345 CpG island CpG island 5065
Tssr114934 12 106527893 to 106527896 3 + TSS region transcription start site region 114934
Gm32935 12 106528862 to 106540584 11722 + lncRNA gene predicted gene, 32935
D12Mit232 12 106533373 to 106533516 143 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 232
Gm17053 12 106544837 to 106546326 1489 - pseudogene predicted gene 17053
Cpgi5066 12 106545745 to 106545967 222 CpG island CpG island 5066
Gm17033 12 106558750 to 106574924 16174 + lincRNA gene predicted gene 17033
Tssr114935 12 106585869 to 106585877 8 + TSS region transcription start site region 114935
Cpgi5067 12 106593501 to 106594099 598 CpG island CpG island 5067
Tssr117615 12 106634510 to 106634517 7 - TSS region transcription start site region 117615
Gm46320 12 106634705 to 106672087 37382 + protein coding gene predicted gene, 46320
Cpgi5068 12 106681929 to 106682135 206 CpG island CpG island 5068
4933406K04Rik 12 106685607 to 106716324 30717 - lincRNA gene RIKEN cDNA 4933406K04 gene
D12Mit27 12 106697812 to 106698092 280 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 27
Mobq3 12 106697812 to 106698092 280 QTL multigenic obesity QTL 3
Tssr117616 12 106716296 to 106716306 10 - TSS region transcription start site region 117616
Tssr117617 12 106716323 to 106716336 13 - TSS region transcription start site region 117617
Tssr117618 12 106716341 to 106716344 3 - TSS region transcription start site region 117618
Tssr117619 12 106716346 to 106716366 20 - TSS region transcription start site region 117619
Gm40569 12 106836879 to 106839888 3009 + lncRNA gene predicted gene, 40569
1700013N06Rik 12 106865355 to 106878883 13528 + lincRNA gene RIKEN cDNA 1700013N06 gene
Gm9599 12 106886446 to 106886926 480 - pseudogene predicted gene 9599
D12Mit207.1 12 106913409 to 106913544 135 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 207.1
D12Mit207 12 106913529 to 106913729 200 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 207
Gm16087 12 106953814 to 106955109 1295 - lincRNA gene predicted gene 16087
D12Mit132 12 106972772 to 106972901 129 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 132
Heal5 12 106972772 to 106972901 129 QTL wound healing/regeneration 5
5830406C21Rik 12 107070897 to 107073453 2556 unclassified gene RIKEN cDNA 5830406C21 gene
Gm16086 12 107079360 to 107099673 20313 - lincRNA gene predicted gene 16086
Gm46321 12 107111059 to 107112147 1088 - protein coding gene predicted gene, 46321
Tssr117620 12 107123708 to 107123720 12 - TSS region transcription start site region 117620
Tssr114936 12 107124441 to 107124456 15 + TSS region transcription start site region 114936
Tssr114937 12 107129658 to 107129669 11 + TSS region transcription start site region 114937
Gm16085 12 107129681 to 107132576 2895 + lincRNA gene predicted gene 16085
Tssr117621 12 107131475 to 107131487 12 - TSS region transcription start site region 117621
Tssr117622 12 107131514 to 107131523 9 - TSS region transcription start site region 117622
Tssr117623 12 107131918 to 107131926 8 - TSS region transcription start site region 117623
Tssr114938 12 107141504 to 107141517 13 + TSS region transcription start site region 114938
Tssr114939 12 107141558 to 107141568 10 + TSS region transcription start site region 114939
Tssr117624 12 107146786 to 107146792 6 - TSS region transcription start site region 117624
Gm16084 12 107147164 to 107160207 13043 - lincRNA gene predicted gene 16084
Tssr117625 12 107157156 to 107157171 15 - TSS region transcription start site region 117625
Tssr114940 12 107157336 to 107157372 36 + TSS region transcription start site region 114940
Tssr114941 12 107159728 to 107159732 4 + TSS region transcription start site region 114941
Tssr114942 12 107183548 to 107183566 18 + TSS region transcription start site region 114942
Gm2800 12 107183555 to 107186734 3179 + lincRNA gene predicted gene 2800
Cpgi5069 12 107183704 to 107183866 162 CpG island CpG island 5069
D12Mit122 12 107203137 to 107203286 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 122
Gm5187 12 107205076 to 107206066 990 - pseudogene predicted gene 5187
Tssr114943 12 107225535 to 107225538 3 + TSS region transcription start site region 114943
Bbaa6 12 107342009 to 107342134 125 QTL B.burgdorferi-associated arthritis 6
D12Mit139 12 107342009 to 107342134 125 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 139
Bbaa27 12 107342134 to 91287446 -16054688 QTL B.burgdorferi-associated arthritis 27
Tssr114944 12 107379056 to 107379057 1 + TSS region transcription start site region 114944
Gm17052 12 107419141 to 107419429 288 + pseudogene predicted gene 17052
D12Mit53 12 107459086 to 107459221 135 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 53
Gm3234 12 107463269 to 107488583 25314 - lincRNA gene predicted gene 3234
3110018I06Rik 12 107488632 to 107489636 1004 + unclassified gene RIKEN cDNA 3110018I06 gene
Gm9006 12 107613000 to 107613840 840 + pseudogene predicted gene 9006
Gm33236 12 107624195 to 107649915 25720 - lncRNA gene predicted gene, 33236
Tssr114945 12 107691066 to 107691077 11 + TSS region transcription start site region 114945
4930465M20Rik 12 107723743 to 107735488 11745 - lincRNA gene RIKEN cDNA 4930465M20 gene
D12Mit1010 12 107735177 to 107735394 217 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 1010
Tssr117626 12 107735490 to 107735501 11 - TSS region transcription start site region 117626
Gm15208 12 107744136 to 107784041 39905 - lincRNA gene predicted gene 15208
Gm33341 12 107824390 to 107825701 1311 + lncRNA gene predicted gene, 33341
4930440F04Rik 12 107899065 to 107899900 835 unclassified gene RIKEN cDNA 4930440F04 gene
Tssr3939 12 107903928 to 107903932 4 + TSS region transcription start site region 3939
Bcl11b 12 107910403 to 108003602 93199 - protein coding gene B cell leukemia/lymphoma 11B
Tssr117627 12 107911609 to 107911615 6 - TSS region transcription start site region 117627
Tssr117628 12 107912034 to 107912047 13 - TSS region transcription start site region 117628
Tssr117629 12 107912220 to 107912231 11 - TSS region transcription start site region 117629
Tssr117630 12 107912650 to 107912665 15 - TSS region transcription start site region 117630
Tssr117631 12 107913499 to 107913510 11 - TSS region transcription start site region 117631
Tssr117632 12 107913604 to 107913609 5 - TSS region transcription start site region 117632
Tssr117633 12 107915024 to 107915033 9 - TSS region transcription start site region 117633
Cpgi5070 12 107915227 to 107917585 2358 CpG island CpG island 5070
MCA1 12 107923581 to 107923795 214 DNA segment DNA segment, MCA1, multiple CA repeat 1
Tssr117634 12 107928873 to 107928879 6 - TSS region transcription start site region 117634
Tssr117635 12 107931308 to 107931310 2 - TSS region transcription start site region 117635
Tssr117636 12 107938646 to 107938662 16 - TSS region transcription start site region 117636
Tssr117637 12 107938672 to 107938691 19 - TSS region transcription start site region 117637
Tssr117638 12 107938737 to 107938749 12 - TSS region transcription start site region 117638
Tssr117639 12 107938752 to 107938768 16 - TSS region transcription start site region 117639
Tssr117640 12 107938773 to 107938784 11 - TSS region transcription start site region 117640
Tssr117641 12 107938793 to 107938801 8 - TSS region transcription start site region 117641
Tssr117642 12 107938830 to 107938839 9 - TSS region transcription start site region 117642
Tssr117643 12 107938948 to 107938958 10 - TSS region transcription start site region 117643
Tssr117644 12 107939059 to 107939074 15 - TSS region transcription start site region 117644
Tssr117645 12 107939090 to 107939123 33 - TSS region transcription start site region 117645
Tssr117646 12 107939130 to 107939141 11 - TSS region transcription start site region 117646
Tssr117647 12 107939146 to 107939153 7 - TSS region transcription start site region 117647
Tssr117648 12 107939206 to 107939223 17 - TSS region transcription start site region 117648
Tssr117649 12 107939232 to 107939249 17 - TSS region transcription start site region 117649
Tssr117650 12 107939270 to 107939311 41 - TSS region transcription start site region 117650
Tssr117651 12 107945572 to 107945576 4 - TSS region transcription start site region 117651
Tssr117652 12 107956651 to 107956654 3 - TSS region transcription start site region 117652
Tssr117653 12 107959038 to 107959046 8 - TSS region transcription start site region 117653
Tssr117654 12 107960214 to 107960219 5 - TSS region transcription start site region 117654
A130014H13Rik 12 107970456 to 107975278 4822 unclassified gene RIKEN cDNA A130014H13 gene
Tssr3940 12 107970567 to 107970585 18 - TSS region transcription start site region 3940
Tssr117655 12 107970712 to 107970716 4 - TSS region transcription start site region 117655
Tssr117656 12 107972036 to 107972038 2 - TSS region transcription start site region 117656
Tssr117657 12 107974946 to 107974950 4 - TSS region transcription start site region 117657
Cpgi5071 12 107976657 to 107976882 225 CpG island CpG island 5071
Cpgi5072 12 107979949 to 107980798 849 CpG island CpG island 5072
Tssr117658 12 107980786 to 107980804 18 - TSS region transcription start site region 117658
Tssr117659 12 107985290 to 107985296 6 - TSS region transcription start site region 117659
Tssr117660 12 107991539 to 107991554 15 - TSS region transcription start site region 117660
Tssr117661 12 107996216 to 107996218 2 - TSS region transcription start site region 117661
Tssr114946 12 107996454 to 107996460 6 + TSS region transcription start site region 114946
Cpgi5073 12 107998760 to 107999080 320 CpG island CpG island 5073
Tssr117662 12 108001706 to 108001720 14 - TSS region transcription start site region 117662
Tssr117663 12 108001991 to 108001994 3 - TSS region transcription start site region 117663
Cpgi5074 12 108002034 to 108004515 2481 CpG island CpG island 5074
Tssr114947 12 108002051 to 108002055 4 + TSS region transcription start site region 114947
Tssr117664 12 108002114 to 108002123 9 - TSS region transcription start site region 117664
Tssr117665 12 108003201 to 108003212 11 - TSS region transcription start site region 117665
Tssr117666 12 108003518 to 108003571 53 - TSS region transcription start site region 117666
Tssr117667 12 108003581 to 108003592 11 - TSS region transcription start site region 117667
Tssr117668 12 108003594 to 108003613 19 - TSS region transcription start site region 117668
Tssr117669 12 108003622 to 108003633 11 - TSS region transcription start site region 117669
Tssr117670 12 108003642 to 108003663 21 - TSS region transcription start site region 117670
Tssr117671 12 108003687 to 108003705 18 - TSS region transcription start site region 117671
Tssr117672 12 108003761 to 108003772 11 - TSS region transcription start site region 117672
Tssr117673 12 108004056 to 108004085 29 - TSS region transcription start site region 117673
Tssr117674 12 108004086 to 108004097 11 - TSS region transcription start site region 117674
Cpgi5075 12 108004790 to 108006674 1884 CpG island CpG island 5075
Setd3 12 108106431 to 108179314 72883 - protein coding gene SET domain containing 3
Tssr117675 12 108118712 to 108118729 17 - TSS region transcription start site region 117675
4932441P12Rik 12 108118846 to 108121283 2437 unclassified gene RIKEN cDNA 4932441P12 gene
Cpgi5076 12 108178236 to 108180389 2153 CpG island CpG island 5076
Tssr114948 12 108178483 to 108178497 14 + TSS region transcription start site region 114948
Tssr114949 12 108178851 to 108178860 9 + TSS region transcription start site region 114949
Tssr114950 12 108179133 to 108179134 1 + TSS region transcription start site region 114950
Tssr114951 12 108179136 to 108179169 33 + TSS region transcription start site region 114951
Tssr117676 12 108179210 to 108179225 15 - TSS region transcription start site region 117676
Tssr117677 12 108179237 to 108179339 102 - TSS region transcription start site region 117677
Tssr114952 12 108179543 to 108179582 39 + TSS region transcription start site region 114952
Ccnk 12 108179579 to 108203359 23780 + protein coding gene cyclin K
Tssr114953 12 108179793 to 108179831 38 + TSS region transcription start site region 114953
Tssr114954 12 108179908 to 108179923 15 + TSS region transcription start site region 114954
Tssr114955 12 108187171 to 108187185 14 + TSS region transcription start site region 114955
Tssr114956 12 108189141 to 108189147 6 + TSS region transcription start site region 114956
Tssr114957 12 108195694 to 108195713 19 + TSS region transcription start site region 114957