Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:105643912-106524101

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atg2b 12 105616136 to 105685211 69075 - protein coding gene autophagy related 2B
Gm22790 12 105645843 to 105645971 128 + rRNA gene predicted gene, 22790
Tssr3937 12 105678446 to 105678488 42 + TSS region transcription start site region 3937
Tssr117608 12 105683562 to 105683566 4 - TSS region transcription start site region 117608
Tssr114912 12 105684123 to 105684149 26 + TSS region transcription start site region 114912
Cpgi5044 12 105684343 to 105686056 1713 CpG island CpG island 5044
Tssr117609 12 105685130 to 105685142 12 - TSS region transcription start site region 117609
Tssr117610 12 105685156 to 105685173 17 - TSS region transcription start site region 117610
Tssr117611 12 105685179 to 105685231 52 - TSS region transcription start site region 117611
Tssr117612 12 105685235 to 105685310 75 - TSS region transcription start site region 117612
Tssr114913 12 105685350 to 105685363 13 + TSS region transcription start site region 114913
Gskip 12 105685352 to 105703058 17706 + protein coding gene GSK3B interacting protein
Tssr114914 12 105685384 to 105685430 46 + TSS region transcription start site region 114914
Cpgi5045 12 105705881 to 105706083 202 CpG island CpG island 5045
Tssr114915 12 105705970 to 105705987 17 + TSS region transcription start site region 114915
Ak7 12 105705976 to 105782447 76471 + protein coding gene adenylate kinase 7
Tssr114916 12 105706004 to 105706012 8 + TSS region transcription start site region 114916
Tssr114917 12 105706107 to 105706158 51 + TSS region transcription start site region 114917
Cpgi5046 12 105718690 to 105718915 225 CpG island CpG island 5046
Tssr114918 12 105734066 to 105734105 39 + TSS region transcription start site region 114918
Tssr114919 12 105761391 to 105761427 36 + TSS region transcription start site region 114919
Tssr114920 12 105761446 to 105761458 12 + TSS region transcription start site region 114920
Cpgi5047 12 105766619 to 105766939 320 CpG island CpG island 5047
Tssr114921 12 105776449 to 105776454 5 + TSS region transcription start site region 114921
Cpgi5048 12 105784157 to 105785401 1244 CpG island CpG island 5048
Papola 12 105784694 to 105838944 54250 + protein coding gene poly (A) polymerase alpha
Tssr114922 12 105784695 to 105784743 48 + TSS region transcription start site region 114922
Tssr3938 12 105785069 to 105785077 8 - TSS region transcription start site region 3938
Tssr114923 12 105837231 to 105837254 23 + TSS region transcription start site region 114923
Tssr114924 12 105837412 to 105837461 49 + TSS region transcription start site region 114924
Tssr114925 12 105837990 to 105838007 17 + TSS region transcription start site region 114925
Cpgi5049 12 105862740 to 105862924 184 CpG island CpG island 5049
Tssr114926 12 105862747 to 105862749 2 + TSS region transcription start site region 114926
Gm48807 12 105864262 to 105874745 10483 + lincRNA gene predicted gene, 48807
Gm22120 12 105865724 to 105865793 69 - miRNA gene predicted gene, 22120
Cpgi5050 12 105869857 to 105870056 199 CpG island CpG island 5050
Cpgi5051 12 105875294 to 105875482 188 CpG island CpG island 5051
Gm19554 12 105899841 to 105902150 2309 + lincRNA gene predicted gene, 19554
Tssr114927 12 105899856 to 105899866 10 + TSS region transcription start site region 114927
Gm32370 12 105902119 to 105906788 4669 - lncRNA gene predicted gene, 32370
Gm46377 12 105936786 to 105943590 6804 - lncRNA gene predicted gene, 46377
Cpgi5052 12 105962689 to 105963437 748 CpG island CpG island 5052
Cpgi5053 12 105967950 to 105968218 268 CpG island CpG island 5053
Cpgi5054 12 105989672 to 105989886 214 CpG island CpG island 5054
Cpgi5055 12 106008414 to 106008596 182 CpG island CpG island 5055
Cpgi5056 12 106010034 to 106010983 949 CpG island CpG island 5056
Tssr114928 12 106010204 to 106010225 21 + TSS region transcription start site region 114928
Vrk1 12 106010228 to 106077426 67198 + protein coding gene vaccinia related kinase 1
Tssr114929 12 106010275 to 106010339 64 + TSS region transcription start site region 114929
Tssr114930 12 106030703 to 106030725 22 + TSS region transcription start site region 114930
Tssr117613 12 106034384 to 106034423 39 - TSS region transcription start site region 117613
Cpgi5057 12 106083912 to 106084101 189 CpG island CpG island 5057
Gm46378 12 106085303 to 106088657 3354 + lincRNA gene predicted gene, 46378
Gm32723 12 106094506 to 106096641 2135 + lncRNA gene predicted gene, 32723
Gm32635 12 106094823 to 106098971 4148 - lincRNA gene predicted gene, 32635
Cpgi5058 12 106094881 to 106095085 204 CpG island CpG island 5058
Cpgi5059 12 106098725 to 106099098 373 CpG island CpG island 5059
Cpgi5060 12 106124066 to 106124562 496 CpG island CpG island 5060
Gm47646 12 106131978 to 106145400 13422 - lincRNA gene predicted gene, 47646
1700008O09Rik 12 106139778 to 106140107 329 unclassified gene RIKEN cDNA 1700008O09 gene
Gm32776 12 106146889 to 106151270 4381 + lncRNA gene predicted gene, 32776
Tssr114931 12 106147864 to 106147907 43 + TSS region transcription start site region 114931
4933424L07Rik 12 106158776 to 106160127 1351 unclassified gene RIKEN cDNA 4933424L07 gene
Cpgi5061 12 106174140 to 106174521 381 CpG island CpG island 5061
Gm24986 12 106221075 to 106221206 131 + snoRNA gene predicted gene, 24986
D12Mit115.1 12 106253360 to 106253525 165 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 115.1
D12Mit115 12 106253502 to 106253628 126 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 115
D12Mit50 12 106289933 to 106290064 131 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 50
Cpgi5062 12 106310857 to 106311277 420 CpG island CpG island 5062
Gm17032 12 106327368 to 106330821 3453 + lincRNA gene predicted gene 17032
Tssr114932 12 106408422 to 106408461 39 + TSS region transcription start site region 114932
Gm32830 12 106408442 to 106412733 4291 + lncRNA gene predicted gene, 32830
1700121N20Rik 12 106442653 to 106447666 5013 - lincRNA gene RIKEN cDNA 1700121N20 gene
Tssr117614 12 106444772 to 106444781 9 - TSS region transcription start site region 117614
4930564B12Rik 12 106447831 to 106449368 1537 unclassified gene RIKEN cDNA 4930564B12 gene
Tssr114933 12 106459134 to 106459157 23 + TSS region transcription start site region 114933
Gm3191 12 106459150 to 106459495 345 + pseudogene predicted gene 3191
D12Mit261 12 106469176 to 106469271 95 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 261
Cpgi5063 12 106474672 to 106475128 456 CpG island CpG island 5063
Cpgi5064 12 106478309 to 106478691 382 CpG island CpG island 5064
Gm32876 12 106479244 to 106492024 12780 + lncRNA gene predicted gene, 32876
Gm17031 12 106508242 to 106509910 1668 + pseudogene predicted gene 17031
Cpgi5065 12 106514385 to 106514730 345 CpG island CpG island 5065