Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:104948123-106178142

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146 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Syne3 12 104929933 to 105009809 79876 - protein coding gene spectrin repeat containing, nuclear envelope family member 3
Tssr3934 12 104956259 to 104956262 3 - TSS region transcription start site region 3934
Tssr117593 12 104988270 to 104988273 3 - TSS region transcription start site region 117593
Tssr3935 12 104988762 to 104988766 4 - TSS region transcription start site region 3935
Tssr114891 12 104992583 to 104992594 11 + TSS region transcription start site region 114891
Tssr117594 12 104998682 to 104998710 28 - TSS region transcription start site region 117594
Tssr114892 12 105001198 to 105001247 49 + TSS region transcription start site region 114892
Tssr114893 12 105003443 to 105003461 18 + TSS region transcription start site region 114893
Gm31742 12 105003565 to 105007957 4392 + lncRNA gene predicted gene, 31742
Tssr117595 12 105006872 to 105006876 4 - TSS region transcription start site region 117595
Cpgi5037 12 105009405 to 105010415 1010 CpG island CpG island 5037
Tssr117596 12 105010005 to 105010021 16 - TSS region transcription start site region 117596
Tssr117597 12 105010023 to 105010059 36 - TSS region transcription start site region 117597
Tssr117598 12 105010062 to 105010086 24 - TSS region transcription start site region 117598
Gm46375 12 105012683 to 105023679 10996 - lncRNA gene predicted gene, 46375
Tssr3936 12 105013113 to 105013140 27 - TSS region transcription start site region 3936
Tssr114894 12 105019496 to 105019506 10 + TSS region transcription start site region 114894
Tssr114895 12 105019531 to 105019557 26 + TSS region transcription start site region 114895
Tssr114896 12 105020113 to 105020143 30 + TSS region transcription start site region 114896
Gm47648 12 105021359 to 105029936 8577 + lincRNA gene predicted gene, 47648
Gm47650 12 105027642 to 105027963 321 - pseudogene predicted gene, 47650
Snhg10 12 105030617 to 105032279 1662 - lncRNA gene small nucleolar RNA host gene 10
Scarna13 12 105031075 to 105031349 274 - snoRNA gene small Cajal body-specific RNA 1
Mir3069 12 105031077 to 105031141 64 - miRNA gene microRNA 3069
Cpgi5038 12 105032019 to 105033250 1231 CpG island CpG island 5038
Tssr117599 12 105032056 to 105032060 4 - TSS region transcription start site region 117599
Tssr117600 12 105032240 to 105032258 18 - TSS region transcription start site region 117600
Tssr117601 12 105032261 to 105032307 46 - TSS region transcription start site region 117601
Glrx5 12 105032618 to 105040911 8293 + protein coding gene glutaredoxin 5
Tssr114897 12 105032638 to 105032705 67 + TSS region transcription start site region 114897
Gm46374 12 105036168 to 105040268 4100 - lncRNA gene predicted gene, 46374
D12Mit29 12 105039595 to 105039857 262 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 29
Gm31884 12 105047904 to 105053457 5553 + lncRNA gene predicted gene, 31884
Gm31829 12 105058207 to 105102983 44776 - lncRNA gene predicted gene, 31829
Lifespan3 12 105086615 to 105086762 147 QTL life span 3
Chlq17 12 105086615 to 105086762 147 QTL circulating hormone level QTL 17
D12Mit167 12 105086615 to 105086762 147 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 167
Gm32062 12 105120261 to 105138103 17842 + lncRNA gene predicted gene, 32062
Gm47672 12 105135196 to 105135441 245 + pseudogene predicted gene, 47672
Tcl1b2 12 105147012 to 105155225 8213 + protein coding gene T cell leukemia/lymphoma 1B, 2
Tcl1b1 12 105159704 to 105166625 6921 + protein coding gene T cell leukemia/lymphoma 1B, 1
Tcl1b5 12 105176358 to 105181145 4787 + protein coding gene T cell leukemia/lymphoma 1B, 5
Tcl1b3 12 105191045 to 105195399 4354 + protein coding gene T cell leukemia/lymphoma 1B, 3
Tcl1b4 12 105201957 to 105206993 5036 + protein coding gene T cell leukemia/lymphoma 1B, 4
Tcl1 12 105216753 to 105222737 5984 - protein coding gene T cell lymphoma breakpoint 1
Tssr117602 12 105222712 to 105222722 10 - TSS region transcription start site region 117602
Tssr117603 12 105222734 to 105222745 11 - TSS region transcription start site region 117603
Tssr117604 12 105222761 to 105222772 11 - TSS region transcription start site region 117604
Cpgi5039 12 105336273 to 105337786 1513 CpG island CpG island 5039
Tunar 12 105336594 to 105383932 47338 + lincRNA gene Tcl1 upstream neural differentiation associated RNA
Tssr114898 12 105336808 to 105336837 29 + TSS region transcription start site region 114898
Tssr114899 12 105336922 to 105336970 48 + TSS region transcription start site region 114899
Tssr114900 12 105337160 to 105337170 10 + TSS region transcription start site region 114900
Tssr114901 12 105337180 to 105337191 11 + TSS region transcription start site region 114901
Tssr114902 12 105337195 to 105337225 30 + TSS region transcription start site region 114902
Prdt4 12 105342095 to 105342236 141 QTL prion disease incubation time 4
D12Mit28 12 105342095 to 105342236 141 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 28
Gm2721 12 105394856 to 105403760 8904 - lincRNA gene predicted gene 2721
Tssr114903 12 105395578 to 105395580 2 + TSS region transcription start site region 114903
Gm46376 12 105404019 to 105412005 7986 + lincRNA gene predicted gene, 46376
Cpgi5040 12 105453661 to 105454336 675 CpG island CpG island 5040
Tssr114904 12 105453831 to 105453919 88 + TSS region transcription start site region 114904
D430019H16Rik 12 105453856 to 105493095 39239 + protein coding gene RIKEN cDNA D430019H16 gene
Tssr114905 12 105454009 to 105454027 18 + TSS region transcription start site region 114905
Tssr114906 12 105454035 to 105454047 12 + TSS region transcription start site region 114906
Tssr114907 12 105475901 to 105475911 10 + TSS region transcription start site region 114907
Tssr114908 12 105488651 to 105488662 11 + TSS region transcription start site region 114908
Tssr117605 12 105489323 to 105489334 11 - TSS region transcription start site region 117605
Gm40566 12 105491795 to 105497086 5291 - lncRNA gene predicted gene, 40566
Tssr114909 12 105513411 to 105513423 12 + TSS region transcription start site region 114909
AU015791 12 105513480 to 105515246 1766 + lincRNA gene expressed sequence AU015791
Gm40565 12 105514468 to 105517750 3282 - lncRNA gene predicted gene, 40565
Tssr117606 12 105523473 to 105523487 14 - TSS region transcription start site region 117606
Gm47796 12 105561263 to 105562556 1293 + lincRNA gene predicted gene, 47796
Cpgi5041 12 105562839 to 105563275 436 CpG island CpG island 5041
Tssr114910 12 105563123 to 105563142 19 + TSS region transcription start site region 114910
Bdkrb2 12 105563226 to 105595237 32011 + protein coding gene bradykinin receptor, beta 2
Cpgi5042 12 105563743 to 105564013 270 CpG island CpG island 5042
Tssr114911 12 105590079 to 105590083 4 + TSS region transcription start site region 114911
Cpgi5043 12 105591602 to 105592680 1078 CpG island CpG island 5043
Bdkrb1 12 105604091 to 105605428 1337 + protein coding gene bradykinin receptor, beta 1
Tssr117607 12 105614658 to 105614662 4 - TSS region transcription start site region 117607
Atg2b 12 105616136 to 105685211 69075 - protein coding gene autophagy related 2B
Gm22790 12 105645843 to 105645971 128 + rRNA gene predicted gene, 22790
Tssr3937 12 105678446 to 105678488 42 + TSS region transcription start site region 3937
Tssr117608 12 105683562 to 105683566 4 - TSS region transcription start site region 117608
Tssr114912 12 105684123 to 105684149 26 + TSS region transcription start site region 114912
Cpgi5044 12 105684343 to 105686056 1713 CpG island CpG island 5044
Tssr117609 12 105685130 to 105685142 12 - TSS region transcription start site region 117609
Tssr117610 12 105685156 to 105685173 17 - TSS region transcription start site region 117610
Tssr117611 12 105685179 to 105685231 52 - TSS region transcription start site region 117611
Tssr117612 12 105685235 to 105685310 75 - TSS region transcription start site region 117612
Tssr114913 12 105685350 to 105685363 13 + TSS region transcription start site region 114913
Gskip 12 105685352 to 105703058 17706 + protein coding gene GSK3B interacting protein
Tssr114914 12 105685384 to 105685430 46 + TSS region transcription start site region 114914
Cpgi5045 12 105705881 to 105706083 202 CpG island CpG island 5045
Tssr114915 12 105705970 to 105705987 17 + TSS region transcription start site region 114915
Ak7 12 105705976 to 105782447 76471 + protein coding gene adenylate kinase 7
Tssr114916 12 105706004 to 105706012 8 + TSS region transcription start site region 114916
Tssr114917 12 105706107 to 105706158 51 + TSS region transcription start site region 114917
Cpgi5046 12 105718690 to 105718915 225 CpG island CpG island 5046
Tssr114918 12 105734066 to 105734105 39 + TSS region transcription start site region 114918
Tssr114919 12 105761391 to 105761427 36 + TSS region transcription start site region 114919
Tssr114920 12 105761446 to 105761458 12 + TSS region transcription start site region 114920
Cpgi5047 12 105766619 to 105766939 320 CpG island CpG island 5047
Tssr114921 12 105776449 to 105776454 5 + TSS region transcription start site region 114921
Cpgi5048 12 105784157 to 105785401 1244 CpG island CpG island 5048
Papola 12 105784694 to 105838944 54250 + protein coding gene poly (A) polymerase alpha
Tssr114922 12 105784695 to 105784743 48 + TSS region transcription start site region 114922
Tssr3938 12 105785069 to 105785077 8 - TSS region transcription start site region 3938
Tssr114923 12 105837231 to 105837254 23 + TSS region transcription start site region 114923
Tssr114924 12 105837412 to 105837461 49 + TSS region transcription start site region 114924
Tssr114925 12 105837990 to 105838007 17 + TSS region transcription start site region 114925
Cpgi5049 12 105862740 to 105862924 184 CpG island CpG island 5049
Tssr114926 12 105862747 to 105862749 2 + TSS region transcription start site region 114926
Gm48807 12 105864262 to 105874745 10483 + lincRNA gene predicted gene, 48807
Gm22120 12 105865724 to 105865793 69 - miRNA gene predicted gene, 22120
Cpgi5050 12 105869857 to 105870056 199 CpG island CpG island 5050
Cpgi5051 12 105875294 to 105875482 188 CpG island CpG island 5051
Gm19554 12 105899841 to 105902150 2309 + lincRNA gene predicted gene, 19554
Tssr114927 12 105899856 to 105899866 10 + TSS region transcription start site region 114927
Gm32370 12 105902119 to 105906788 4669 - lncRNA gene predicted gene, 32370
Gm46377 12 105936786 to 105943590 6804 - lncRNA gene predicted gene, 46377
Cpgi5052 12 105962689 to 105963437 748 CpG island CpG island 5052
Cpgi5053 12 105967950 to 105968218 268 CpG island CpG island 5053
Cpgi5054 12 105989672 to 105989886 214 CpG island CpG island 5054
Cpgi5055 12 106008414 to 106008596 182 CpG island CpG island 5055
Cpgi5056 12 106010034 to 106010983 949 CpG island CpG island 5056
Tssr114928 12 106010204 to 106010225 21 + TSS region transcription start site region 114928
Vrk1 12 106010228 to 106077426 67198 + protein coding gene vaccinia related kinase 1
Tssr114929 12 106010275 to 106010339 64 + TSS region transcription start site region 114929
Tssr114930 12 106030703 to 106030725 22 + TSS region transcription start site region 114930
Tssr117613 12 106034384 to 106034423 39 - TSS region transcription start site region 117613
Cpgi5057 12 106083912 to 106084101 189 CpG island CpG island 5057
Gm46378 12 106085303 to 106088657 3354 + lincRNA gene predicted gene, 46378
Gm32723 12 106094506 to 106096641 2135 + lncRNA gene predicted gene, 32723
Gm32635 12 106094823 to 106098971 4148 - lincRNA gene predicted gene, 32635
Cpgi5058 12 106094881 to 106095085 204 CpG island CpG island 5058
Cpgi5059 12 106098725 to 106099098 373 CpG island CpG island 5059
Cpgi5060 12 106124066 to 106124562 496 CpG island CpG island 5060
Gm47646 12 106131978 to 106145400 13422 - lincRNA gene predicted gene, 47646
1700008O09Rik 12 106139778 to 106140107 329 unclassified gene RIKEN cDNA 1700008O09 gene
Gm32776 12 106146889 to 106151270 4381 + lncRNA gene predicted gene, 32776
Tssr114931 12 106147864 to 106147907 43 + TSS region transcription start site region 114931
4933424L07Rik 12 106158776 to 106160127 1351 unclassified gene RIKEN cDNA 4933424L07 gene
Cpgi5061 12 106174140 to 106174521 381 CpG island CpG island 5061