Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:10480603-11260733

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27 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38407 12 10446388 to 10531303 84915 + lincRNA gene predicted gene, 38407
Gm48886 12 10493500 to 10494199 699 + pseudogene predicted gene, 48886
Gm4928 12 10723794 to 10724587 793 - pseudogene predicted gene 4928
Tssr115726 12 10724094 to 10724119 25 - TSS region transcription start site region 115726
Tglq5 12 10870603 to 10870733 130 QTL triglyceride QTL 5
D12Mit182 12 10870603 to 10870733 130 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 182
Chldq7 12 10870603 to 10870733 130 QTL cholesterol and HDL QTL 7
Femwf9 12 10870603 to 10870733 130 QTL femur work to failure 9
Pgk1-rs7 12 10898986 to 10900240 1254 - pseudogene phosphoglycerate kinase-1, related sequence-7
Tssr115727 12 10900313 to 10900318 5 - TSS region transcription start site region 115727
Gm48082 12 10990354 to 10994195 3841 + pseudogene predicted gene, 48082
7420701I03Rik 12 11047813 to 11078741 30928 + lincRNA gene RIKEN cDNA 7420701I03 gene
Kcns3 12 11090202 to 11151056 60854 - protein coding gene potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3
Gm48088 12 11099596 to 11100077 481 + pseudogene predicted gene, 48088
Tssr112785 12 11139498 to 11139499 1 + TSS region transcription start site region 112785
Cpgi4414 12 11149216 to 11150980 1764 CpG island CpG island 4414
Tssr115728 12 11150305 to 11150348 43 - TSS region transcription start site region 115728
9530020I12Rik 12 11185993 to 11204502 18509 - lincRNA gene RIKEN cDNA 9530020I12 gene
Cpgi4415 12 11196188 to 11196490 302 CpG island CpG island 4415
Tssr115729 12 11204286 to 11204303 17 - TSS region transcription start site region 115729
Tssr115730 12 11204305 to 11204325 20 - TSS region transcription start site region 115730
Tssr115731 12 11204375 to 11204387 12 - TSS region transcription start site region 115731
D12Mit240 12 11207819 to 11207931 112 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 240
Msgn1 12 11208382 to 11208948 566 - protein coding gene mesogenin 1
Cpgi4416 12 11208445 to 11208786 341 CpG island CpG island 4416
1700034J04Rik 12 11221461 to 11222210 749 - unclassified gene RIKEN cDNA 1700034J04 gene
Gen1 12 11239718 to 11266029 26311 - protein coding gene GEN1, Holliday junction 5' flap endonuclease