Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:104403466-104963485

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40561 12 104401802 to 104404168 2366 - lncRNA gene predicted gene, 40561
Tssr114871 12 104406704 to 104406728 24 + TSS region transcription start site region 114871
Serpina3n 12 104406729 to 104414329 7600 + protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 3N
Tssr114872 12 104406733 to 104406754 21 + TSS region transcription start site region 114872
Tssr114873 12 104408885 to 104408912 27 + TSS region transcription start site region 114873
Tssr114874 12 104413470 to 104413483 13 + TSS region transcription start site region 114874
Tssr114875 12 104413603 to 104413616 13 + TSS region transcription start site region 114875
Tssr114876 12 104413639 to 104413657 18 + TSS region transcription start site region 114876
Tssr114877 12 104413674 to 104413702 28 + TSS region transcription start site region 114877
Tssr114878 12 104413768 to 104413779 11 + TSS region transcription start site region 114878
Tssr114879 12 104413822 to 104413862 40 + TSS region transcription start site region 114879
Tssr114880 12 104413872 to 104413879 7 + TSS region transcription start site region 114880
Tssr114881 12 104414057 to 104414076 19 + TSS region transcription start site region 114881
Tssr114882 12 104414080 to 104414101 21 + TSS region transcription start site region 114882
Gm24334 12 104419273 to 104419400 127 - snoRNA gene predicted gene, 24334
Gm40562 12 104433870 to 104440158 6288 + lncRNA gene predicted gene, 40562
Cpgi5024 12 104440138 to 104440421 283 CpG island CpG island 5024
Cpgi5025 12 104446794 to 104447420 626 CpG island CpG island 5025
Cpgi5026 12 104471200 to 104473734 2534 CpG island CpG island 5026
Gsc 12 104471209 to 104473236 2027 - protein coding gene goosecoid homeobox
Tssr117576 12 104473236 to 104473254 18 - TSS region transcription start site region 117576
Gm10000 12 104473331 to 104477759 4428 + bidirectional promoter lncRNA gene predicted gene 10000
Tssr117577 12 104473366 to 104473373 7 - TSS region transcription start site region 117577
Cpgi5027 12 104474341 to 104474955 614 CpG island CpG island 5027
Cpgi5028 12 104475956 to 104476375 419 CpG island CpG island 5028
Gm49732 12 104509198 to 104525977 16779 + lincRNA gene predicted gene, 49732
Tssr117578 12 104512657 to 104512659 2 - TSS region transcription start site region 117578
D12Mit100 12 104530304 to 104530397 93 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 100
Cpgi5029 12 104531732 to 104531994 262 CpG island CpG island 5029
Cpgi5030 12 104546056 to 104546259 203 CpG island CpG island 5030
Tssr117579 12 104561772 to 104561796 24 - TSS region transcription start site region 117579
Cpgi5031 12 104568254 to 104568568 314 CpG island CpG island 5031
D12Mit290 12 104573023 to 104573115 92 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 290
Cpgi5032 12 104584042 to 104584382 340 CpG island CpG island 5032
Cpgi5033 12 104593423 to 104593811 388 CpG island CpG island 5033
Cpgi5034 12 104606085 to 104606370 285 CpG island CpG island 5034
Gm31573 12 104661424 to 104662697 1273 - lncRNA gene predicted gene, 31573
Tssr114883 12 104683466 to 104683485 19 + TSS region transcription start site region 114883
Dicer1 12 104687742 to 104751952 64210 - protein coding gene dicer 1, ribonuclease type III
Cpgi5035 12 104751077 to 104752692 1615 CpG island CpG island 5035
Tssr117580 12 104751900 to 104751937 37 - TSS region transcription start site region 117580
Tssr117581 12 104752025 to 104752115 90 - TSS region transcription start site region 117581
Tssr114884 12 104752180 to 104752224 44 + TSS region transcription start site region 114884
Tssr117582 12 104761506 to 104761524 18 - TSS region transcription start site region 117582
Tssr114885 12 104761626 to 104761639 13 + TSS region transcription start site region 114885
Clmn 12 104763117 to 104865076 101959 - protein coding gene calmin
D12Mit195.2 12 104800995 to 104801126 131 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 195.2
D12Mit195 12 104801109 to 104801248 139 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 195
D12Mit195.1 12 104801216 to 104801327 111 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 195.1
Tssr114886 12 104819234 to 104819258 24 + TSS region transcription start site region 114886
Tssr114887 12 104820279 to 104820324 45 + TSS region transcription start site region 114887
Tssr117583 12 104856492 to 104856505 13 - TSS region transcription start site region 117583
Tssr117584 12 104856629 to 104856636 7 - TSS region transcription start site region 117584
Tssr114888 12 104857079 to 104857085 6 + TSS region transcription start site region 114888
4930408O17Rik 12 104857371 to 104871535 14164 + lincRNA gene RIKEN cDNA 4930408O17 gene
Tssr114889 12 104862066 to 104862076 10 + TSS region transcription start site region 114889
Tssr3933 12 104862089 to 104862096 7 + TSS region transcription start site region 3933
Cpgi5036 12 104864389 to 104865635 1246 CpG island CpG island 5036
Tssr117585 12 104864957 to 104864991 34 - TSS region transcription start site region 117585
Tssr117586 12 104865007 to 104865029 22 - TSS region transcription start site region 117586
Tssr117587 12 104865038 to 104865052 14 - TSS region transcription start site region 117587
Tssr117588 12 104865082 to 104865138 56 - TSS region transcription start site region 117588
Tssr117589 12 104865150 to 104865163 13 - TSS region transcription start site region 117589
Tssr117590 12 104865189 to 104865198 9 - TSS region transcription start site region 117590
Tssr114890 12 104865376 to 104865400 24 + TSS region transcription start site region 114890
Gm28875 12 104925501 to 104926689 1188 - lincRNA gene predicted gene 28875
Tssr117591 12 104926836 to 104926839 3 - TSS region transcription start site region 117591
Syne3 12 104929933 to 105009809 79876 - protein coding gene spectrin repeat containing, nuclear envelope family member 3
Tssr117592 12 104930051 to 104930074 23 - TSS region transcription start site region 117592
Tssr3934 12 104956259 to 104956262 3 - TSS region transcription start site region 3934