Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:104068366-104878373

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138 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr114823 12 104077936 to 104077952 16 + TSS region transcription start site region 114823
Serpina4-ps1 12 104080649 to 104086724 6075 + pseudogene serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1
Tssr114824 12 104084174 to 104084185 11 + TSS region transcription start site region 114824
Tssr114825 12 104084220 to 104084231 11 + TSS region transcription start site region 114825
Tssr114826 12 104100982 to 104100998 16 + TSS region transcription start site region 114826
Tssr114827 12 104101020 to 104101028 8 + TSS region transcription start site region 114827
Tssr114828 12 104101087 to 104101098 11 + TSS region transcription start site region 114828
Serpina5 12 104101113 to 104106137 5024 + protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 5
Tssr114829 12 104101142 to 104101157 15 + TSS region transcription start site region 114829
Tssr114830 12 104101160 to 104101169 9 + TSS region transcription start site region 114830
Tssr114831 12 104101173 to 104101176 3 + TSS region transcription start site region 114831
Gm23289 12 104109283 to 104109390 107 + rRNA gene predicted gene, 23289
Serpina3a 12 104112724 to 104121896 9172 + protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 3A
Tssr114832 12 104127995 to 104128002 7 + TSS region transcription start site region 114832
Serpina3b 12 104127996 to 104139545 11549 + protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 3B
Serpina3c 12 104146907 to 104153931 7024 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 3C
Tssr117570 12 104153058 to 104153066 8 - TSS region transcription start site region 117570
Tssr117571 12 104153815 to 104153833 18 - TSS region transcription start site region 117571
Tssr117572 12 104153846 to 104153891 45 - TSS region transcription start site region 117572
Serpina3d-ps 12 104175571 to 104178310 2739 - pseudogene serine (or cysteine) peptidase inhibitor, clade A, member 3D, pseudogene
Serpina3e-ps 12 104189517 to 104192926 3409 - pseudogene serine (or cysteine) peptidase inhibitor, clade A, member 3E, pseudogene
Tssr117573 12 104194859 to 104194865 6 - TSS region transcription start site region 117573
Tssr114833 12 104214512 to 104214532 20 + TSS region transcription start site region 114833
Tssr114834 12 104214538 to 104214549 11 + TSS region transcription start site region 114834
Serpina3f 12 104214544 to 104221129 6585 + protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 3F
Gm8918 12 104228917 to 104230003 1086 - pseudogene predicted gene 8918
Tssr114835 12 104236126 to 104236150 24 + TSS region transcription start site region 114835
Tssr114836 12 104236239 to 104236245 6 + TSS region transcription start site region 114836
Serpina3g 12 104236242 to 104241934 5692 + protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 3G
Tssr114837 12 104241252 to 104241264 12 + TSS region transcription start site region 114837
Tssr114838 12 104247892 to 104247897 5 + TSS region transcription start site region 114838
Serpina3h 12 104247905 to 104253669 5764 + pseudogene serine (or cysteine) peptidase inhibitor, clade A, member 3H
Tssr114839 12 104263117 to 104263129 12 + TSS region transcription start site region 114839
Serpina3i 12 104263122 to 104269372 6250 + protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 3I
Tssr114840 12 104263133 to 104263158 25 + TSS region transcription start site region 114840
D12Mit102a 12 104298444 to 104298576 132 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 102a
Tssr114841 12 104300703 to 104300736 33 + TSS region transcription start site region 114841
D12Mit102b 12 104302190 to 104302388 198 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 102b
Serpina3j 12 104314553 to 104320725 6172 + protein coding gene serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3J
Tssr114842 12 104338372 to 104338416 44 + TSS region transcription start site region 114842
Serpina3k 12 104338486 to 104345739 7253 + protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 3K
Tssr114843 12 104339068 to 104339101 33 + TSS region transcription start site region 114843
Tssr114844 12 104339195 to 104339237 42 + TSS region transcription start site region 114844
Tssr114845 12 104339254 to 104339269 15 + TSS region transcription start site region 114845
Tssr114846 12 104339339 to 104339358 19 + TSS region transcription start site region 114846
Tssr114847 12 104339363 to 104339381 18 + TSS region transcription start site region 114847
Tssr114848 12 104340483 to 104340488 5 + TSS region transcription start site region 114848
Tssr114849 12 104340510 to 104340521 11 + TSS region transcription start site region 114849
Tssr114850 12 104340527 to 104340565 38 + TSS region transcription start site region 114850
Tssr114851 12 104340586 to 104340638 52 + TSS region transcription start site region 114851
Tssr114852 12 104340643 to 104340670 27 + TSS region transcription start site region 114852
Tssr114853 12 104340854 to 104340870 16 + TSS region transcription start site region 114853
Tssr117574 12 104340869 to 104340909 40 - TSS region transcription start site region 117574
Tssr114854 12 104340997 to 104341040 43 + TSS region transcription start site region 114854
Tssr114855 12 104343064 to 104343072 8 + TSS region transcription start site region 114855
Tssr117575 12 104343100 to 104343113 13 - TSS region transcription start site region 117575
Tssr114856 12 104344120 to 104344127 7 + TSS region transcription start site region 114856
Tssr114857 12 104344132 to 104344144 12 + TSS region transcription start site region 114857
Tssr114858 12 104344204 to 104344228 24 + TSS region transcription start site region 114858
Tssr114859 12 104345269 to 104345275 6 + TSS region transcription start site region 114859
Tssr114860 12 104345289 to 104345311 22 + TSS region transcription start site region 114860
Tssr114861 12 104345313 to 104345328 15 + TSS region transcription start site region 114861
Tssr114862 12 104345344 to 104345354 10 + TSS region transcription start site region 114862
Tssr114863 12 104345361 to 104345372 11 + TSS region transcription start site region 114863
Tssr114864 12 104345411 to 104345417 6 + TSS region transcription start site region 114864
Tssr114865 12 104345462 to 104345471 9 + TSS region transcription start site region 114865
Tssr114866 12 104345475 to 104345502 27 + TSS region transcription start site region 114866
Tssr114867 12 104345531 to 104345540 9 + TSS region transcription start site region 114867
Tssr114868 12 104345548 to 104345559 11 + TSS region transcription start site region 114868
Serpina3l-ps 12 104358003 to 104363534 5531 + pseudogene serine (or cysteine) peptidase inhibitor, clade A, member 3L, pseudogene
Serpina3m 12 104387157 to 104394259 7102 + protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 3M
Tssr114869 12 104387663 to 104387666 3 + TSS region transcription start site region 114869
Tssr114870 12 104387759 to 104387791 32 + TSS region transcription start site region 114870
Gm40561 12 104401802 to 104404168 2366 - lncRNA gene predicted gene, 40561
Tssr114871 12 104406704 to 104406728 24 + TSS region transcription start site region 114871
Serpina3n 12 104406729 to 104414329 7600 + protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 3N
Tssr114872 12 104406733 to 104406754 21 + TSS region transcription start site region 114872
Tssr114873 12 104408885 to 104408912 27 + TSS region transcription start site region 114873
Tssr114874 12 104413470 to 104413483 13 + TSS region transcription start site region 114874
Tssr114875 12 104413603 to 104413616 13 + TSS region transcription start site region 114875
Tssr114876 12 104413639 to 104413657 18 + TSS region transcription start site region 114876
Tssr114877 12 104413674 to 104413702 28 + TSS region transcription start site region 114877
Tssr114878 12 104413768 to 104413779 11 + TSS region transcription start site region 114878
Tssr114879 12 104413822 to 104413862 40 + TSS region transcription start site region 114879
Tssr114880 12 104413872 to 104413879 7 + TSS region transcription start site region 114880
Tssr114881 12 104414057 to 104414076 19 + TSS region transcription start site region 114881
Tssr114882 12 104414080 to 104414101 21 + TSS region transcription start site region 114882
Gm24334 12 104419273 to 104419400 127 - snoRNA gene predicted gene, 24334
Gm40562 12 104433870 to 104440158 6288 + lncRNA gene predicted gene, 40562
Cpgi5024 12 104440138 to 104440421 283 CpG island CpG island 5024
Cpgi5025 12 104446794 to 104447420 626 CpG island CpG island 5025
Cpgi5026 12 104471200 to 104473734 2534 CpG island CpG island 5026
Gsc 12 104471209 to 104473236 2027 - protein coding gene goosecoid homeobox
Tssr117576 12 104473236 to 104473254 18 - TSS region transcription start site region 117576
Gm10000 12 104473331 to 104477759 4428 + bidirectional promoter lncRNA gene predicted gene 10000
Tssr117577 12 104473366 to 104473373 7 - TSS region transcription start site region 117577
Cpgi5027 12 104474341 to 104474955 614 CpG island CpG island 5027
Cpgi5028 12 104475956 to 104476375 419 CpG island CpG island 5028
Gm49732 12 104509198 to 104525977 16779 + lincRNA gene predicted gene, 49732
Tssr117578 12 104512657 to 104512659 2 - TSS region transcription start site region 117578
D12Mit100 12 104530304 to 104530397 93 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 100
Cpgi5029 12 104531732 to 104531994 262 CpG island CpG island 5029
Cpgi5030 12 104546056 to 104546259 203 CpG island CpG island 5030
Tssr117579 12 104561772 to 104561796 24 - TSS region transcription start site region 117579
Cpgi5031 12 104568254 to 104568568 314 CpG island CpG island 5031
D12Mit290 12 104573023 to 104573115 92 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 290
Cpgi5032 12 104584042 to 104584382 340 CpG island CpG island 5032
Cpgi5033 12 104593423 to 104593811 388 CpG island CpG island 5033
Cpgi5034 12 104606085 to 104606370 285 CpG island CpG island 5034
Gm31573 12 104661424 to 104662697 1273 - lncRNA gene predicted gene, 31573
Tssr114883 12 104683466 to 104683485 19 + TSS region transcription start site region 114883
Dicer1 12 104687742 to 104751952 64210 - protein coding gene dicer 1, ribonuclease type III
Cpgi5035 12 104751077 to 104752692 1615 CpG island CpG island 5035
Tssr117580 12 104751900 to 104751937 37 - TSS region transcription start site region 117580
Tssr117581 12 104752025 to 104752115 90 - TSS region transcription start site region 117581
Tssr114884 12 104752180 to 104752224 44 + TSS region transcription start site region 114884
Tssr117582 12 104761506 to 104761524 18 - TSS region transcription start site region 117582
Tssr114885 12 104761626 to 104761639 13 + TSS region transcription start site region 114885
Clmn 12 104763117 to 104865076 101959 - protein coding gene calmin
D12Mit195.2 12 104800995 to 104801126 131 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 195.2
D12Mit195 12 104801109 to 104801248 139 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 195
D12Mit195.1 12 104801216 to 104801327 111 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 195.1
Tssr114886 12 104819234 to 104819258 24 + TSS region transcription start site region 114886
Tssr114887 12 104820279 to 104820324 45 + TSS region transcription start site region 114887
Tssr117583 12 104856492 to 104856505 13 - TSS region transcription start site region 117583
Tssr117584 12 104856629 to 104856636 7 - TSS region transcription start site region 117584
Tssr114888 12 104857079 to 104857085 6 + TSS region transcription start site region 114888
4930408O17Rik 12 104857371 to 104871535 14164 + lincRNA gene RIKEN cDNA 4930408O17 gene
Tssr114889 12 104862066 to 104862076 10 + TSS region transcription start site region 114889
Tssr3933 12 104862089 to 104862096 7 + TSS region transcription start site region 3933
Cpgi5036 12 104864389 to 104865635 1246 CpG island CpG island 5036
Tssr117585 12 104864957 to 104864991 34 - TSS region transcription start site region 117585
Tssr117586 12 104865007 to 104865029 22 - TSS region transcription start site region 117586
Tssr117587 12 104865038 to 104865052 14 - TSS region transcription start site region 117587
Tssr117588 12 104865082 to 104865138 56 - TSS region transcription start site region 117588
Tssr117589 12 104865150 to 104865163 13 - TSS region transcription start site region 117589
Tssr117590 12 104865189 to 104865198 9 - TSS region transcription start site region 117590
Tssr114890 12 104865376 to 104865400 24 + TSS region transcription start site region 114890