Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:103400726-104330740

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Otub2 12 103388682 to 103406350 17668 + protein coding gene OTU domain, ubiquitin aldehyde binding 2
9330161L09Rik 12 103406822 to 103407820 998 - unclassified gene RIKEN cDNA 9330161L09 gene
Ddx24 12 103407982 to 103425830 17848 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 24
Gm47260 12 103412492 to 103415596 3104 - unclassified gene predicted gene, 47260
Tssr117477 12 103416223 to 103416243 20 - TSS region transcription start site region 117477
Cpgi5022 12 103425349 to 103426122 773 CpG island CpG island 5022
Tssr117478 12 103425803 to 103425855 52 - TSS region transcription start site region 117478
Gm40560 12 103429650 to 103431451 1801 - lncRNA gene predicted gene, 40560
Ifi27 12 103434211 to 103440239 6028 + protein coding gene interferon, alpha-inducible protein 27
Tssr114810 12 103434214 to 103434281 67 + TSS region transcription start site region 114810
Ifi27l2a 12 103442167 to 103443680 1513 - protein coding gene interferon, alpha-inducible protein 27 like 2A
Tssr114811 12 103442317 to 103442346 29 + TSS region transcription start site region 114811
Tssr117479 12 103442359 to 103442378 19 - TSS region transcription start site region 117479
Tssr117480 12 103443653 to 103443673 20 - TSS region transcription start site region 117480
Ifi27l2b 12 103450898 to 103457223 6325 - protein coding gene interferon, alpha-inducible protein 27 like 2B
Tssr114812 12 103451092 to 103451132 40 + TSS region transcription start site region 114812
Tssr117481 12 103457188 to 103457192 4 - TSS region transcription start site region 117481
Tssr117482 12 103457195 to 103457270 75 - TSS region transcription start site region 117482
Tssr117483 12 103457278 to 103457282 4 - TSS region transcription start site region 117483
Gm47267 12 103483442 to 103486681 3239 + lincRNA gene predicted gene, 47267
Cpgi5023 12 103531978 to 103533403 1425 CpG island CpG island 5023
Ppp4r4 12 103532283 to 103613831 81548 + protein coding gene protein phosphatase 4, regulatory subunit 4
Tssr114813 12 103532435 to 103532485 50 + TSS region transcription start site region 114813
Tssr114814 12 103532486 to 103532503 17 + TSS region transcription start site region 114814
Tssr114815 12 103550359 to 103550363 4 + TSS region transcription start site region 114815
Tssr114816 12 103551679 to 103551720 41 + TSS region transcription start site region 114816
Tssr117484 12 103609790 to 103609803 13 - TSS region transcription start site region 117484
Serpina10 12 103616675 to 103631490 14815 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10
Tssr117485 12 103631404 to 103631444 40 - TSS region transcription start site region 117485
Tssr114817 12 103640424 to 103640428 4 + TSS region transcription start site region 114817
Gm18501 12 103641406 to 103642069 663 - pseudogene predicted gene, 18501
Tnfp 12 103646630 to 103657212 10582 QTL tumor necrosis factor protection
Serpina6 12 103646630 to 103657212 10582 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 6
Tssr117486 12 103646989 to 103647001 12 - TSS region transcription start site region 117486
Tssr117487 12 103653491 to 103653501 10 - TSS region transcription start site region 117487
Tssr117488 12 103655052 to 103655078 26 - TSS region transcription start site region 117488
Tssr117489 12 103655857 to 103655896 39 - TSS region transcription start site region 117489
Tssr117490 12 103656365 to 103656403 38 - TSS region transcription start site region 117490
Tssr117491 12 103657095 to 103657112 17 - TSS region transcription start site region 117491
Tssr117492 12 103657123 to 103657134 11 - TSS region transcription start site region 117492
Tssr117493 12 103657159 to 103657170 11 - TSS region transcription start site region 117493
Tssr117494 12 103659889 to 103659910 21 - TSS region transcription start site region 117494
Serpina16 12 103668808 to 103676139 7331 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 16
Tssr117495 12 103676718 to 103676729 11 - TSS region transcription start site region 117495
Tssr117496 12 103676765 to 103676773 8 - TSS region transcription start site region 117496
Gm46373 12 103681704 to 103688918 7214 + lncRNA gene predicted gene, 46373
Serpina1f 12 103688044 to 103695529 7485 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 1F
Tssr117497 12 103694032 to 103694049 17 - TSS region transcription start site region 117497
Tssr117498 12 103694657 to 103694673 16 - TSS region transcription start site region 117498
Tssr117499 12 103694674 to 103694680 6 - TSS region transcription start site region 117499
Tssr117500 12 103694686 to 103694703 17 - TSS region transcription start site region 117500
Tssr117501 12 103694713 to 103694718 5 - TSS region transcription start site region 117501
Tssr117502 12 103695017 to 103695023 6 - TSS region transcription start site region 117502
Tssr117503 12 103695439 to 103695454 15 - TSS region transcription start site region 117503
Tssr117504 12 103695527 to 103695536 9 - TSS region transcription start site region 117504
Tssr117505 12 103695580 to 103695592 12 - TSS region transcription start site region 117505
Tssr117506 12 103701126 to 103701131 5 - TSS region transcription start site region 117506
Tssr117507 12 103701177 to 103701184 7 - TSS region transcription start site region 117507
Gm5656 12 103702271 to 103704598 2327 - pseudogene predicted gene 5656
Tssr117508 12 103707305 to 103707314 9 - TSS region transcription start site region 117508
Gm17142 12 103714549 to 103716697 2148 - pseudogene predicted gene 17142
Serpina1b 12 103728156 to 103738189 10033 - protein coding gene serine (or cysteine) preptidase inhibitor, clade A, member 1B
Tssr117509 12 103729277 to 103729297 20 - TSS region transcription start site region 117509
Tssr117510 12 103729371 to 103729391 20 - TSS region transcription start site region 117510
Tssr117511 12 103730276 to 103730304 28 - TSS region transcription start site region 117511
Tssr117512 12 103730351 to 103730370 19 - TSS region transcription start site region 117512
Tssr117513 12 103730402 to 103730424 22 - TSS region transcription start site region 117513
Tssr117514 12 103732533 to 103732565 32 - TSS region transcription start site region 117514
Tssr117515 12 103737902 to 103737930 28 - TSS region transcription start site region 117515
Tssr117516 12 103740215 to 103740220 5 - TSS region transcription start site region 117516
Gm17042 12 103744860 to 103754733 9873 - pseudogene predicted gene 17042
Serpina1d 12 103763594 to 103773592 9998 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 1D
Tssr114818 12 103763751 to 103763795 44 + TSS region transcription start site region 114818
Tssr117517 12 103763795 to 103763840 45 - TSS region transcription start site region 117517
Tssr117518 12 103764815 to 103764826 11 - TSS region transcription start site region 117518
Tssr117519 12 103765730 to 103765753 23 - TSS region transcription start site region 117519
Tssr117520 12 103765808 to 103765836 28 - TSS region transcription start site region 117520
Tssr117521 12 103767884 to 103767907 23 - TSS region transcription start site region 117521
Tssr117522 12 103768028 to 103768047 19 - TSS region transcription start site region 117522
Tssr117523 12 103773564 to 103773579 15 - TSS region transcription start site region 117523
Tssr117524 12 103773599 to 103773610 11 - TSS region transcription start site region 117524
Tssr117525 12 103773619 to 103773630 11 - TSS region transcription start site region 117525
Tssr117526 12 103773631 to 103773640 9 - TSS region transcription start site region 117526
Gm17043 12 103786930 to 103804362 17432 - pseudogene predicted gene 17043
Gm8893 12 103817856 to 103822243 4387 - pseudogene predicted gene 8893
Tssr117527 12 103828031 to 103828062 31 - TSS region transcription start site region 117527
Gm6918 12 103841684 to 103842339 655 - pseudogene predicted gene 6918
Serpina1a 12 103853589 to 103863562 9973 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 1A
Tssr117528 12 103855866 to 103855904 38 - TSS region transcription start site region 117528
Tssr117529 12 103863262 to 103863299 37 - TSS region transcription start site region 117529
Tssr117530 12 103863595 to 103863630 35 - TSS region transcription start site region 117530
Tssr117531 12 103865672 to 103865685 13 - TSS region transcription start site region 117531
Tssr117532 12 103865726 to 103865740 14 - TSS region transcription start site region 117532
Tssr117533 12 103865758 to 103865772 14 - TSS region transcription start site region 117533
Tssr117534 12 103865774 to 103865783 9 - TSS region transcription start site region 117534
Gm8895 12 103880856 to 103881511 655 - pseudogene predicted gene 8895
Serpina1c 12 103894926 to 103904887 9961 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 1C
Tssr3929 12 103895081 to 103895087 6 + TSS region transcription start site region 3929
Tssr114819 12 103895087 to 103895128 41 + TSS region transcription start site region 114819
Tssr117535 12 103895125 to 103895167 42 - TSS region transcription start site region 117535
B430119L08Rik 12 103895897 to 103898784 2887 + antisense lncRNA gene RIKEN cDNA B430119L08 gene
Tssr117536 12 103897064 to 103897095 31 - TSS region transcription start site region 117536
Tssr117537 12 103897206 to 103897238 32 - TSS region transcription start site region 117537
Tssr3930 12 103899238 to 103899277 39 - TSS region transcription start site region 3930
Tssr117538 12 103904892 to 103904901 9 - TSS region transcription start site region 117538
Tssr117539 12 103904944 to 103904955 11 - TSS region transcription start site region 117539
Tssr117540 12 103907030 to 103907031 1 - TSS region transcription start site region 117540
Gm17198 12 103919548 to 103926291 6743 - pseudogene predicted gene 17198
Serpina1e 12 103946931 to 103956897 9966 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 1E
Tssr117541 12 103947112 to 103947141 29 - TSS region transcription start site region 117541
Tssr114820 12 103947126 to 103947132 6 + TSS region transcription start site region 114820
Tssr117542 12 103948159 to 103948169 10 - TSS region transcription start site region 117542
Tssr117543 12 103949150 to 103949172 22 - TSS region transcription start site region 117543
Tssr117544 12 103949280 to 103949317 37 - TSS region transcription start site region 117544
Tssr114821 12 103950790 to 103950837 47 + TSS region transcription start site region 114821
Tssr117545 12 103951082 to 103951084 2 - TSS region transcription start site region 117545
Tssr117546 12 103951256 to 103951267 11 - TSS region transcription start site region 117546
Tssr117547 12 103951293 to 103951307 14 - TSS region transcription start site region 117547
Tssr117548 12 103951386 to 103951412 26 - TSS region transcription start site region 117548
Tssr117549 12 103956569 to 103956592 23 - TSS region transcription start site region 117549
Tssr117550 12 103956891 to 103956901 10 - TSS region transcription start site region 117550
Tssr3931 12 103958862 to 103958869 7 - TSS region transcription start site region 3931
Tssr117551 12 103958878 to 103958889 11 - TSS region transcription start site region 117551
Tssr117552 12 103958894 to 103958919 25 - TSS region transcription start site region 117552
Tssr117553 12 103958924 to 103958935 11 - TSS region transcription start site region 117553
Tssr117554 12 103958939 to 103958945 6 - TSS region transcription start site region 117554
Serpina11 12 103980243 to 103989957 9714 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
Gm28577 12 103984792 to 103996579 11787 - unclassified non-coding RNA gene predicted gene 28577
Tssr117555 12 103989919 to 103989946 27 - TSS region transcription start site region 117555
Tssr117556 12 103989950 to 103989972 22 - TSS region transcription start site region 117556
Tssr3932 12 103992390 to 103992393 3 + TSS region transcription start site region 3932
Serpina9 12 103996613 to 104013776 17163 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9
Tssr117557 12 104002726 to 104002734 8 - TSS region transcription start site region 117557
Tssr117558 12 104008736 to 104008753 17 - TSS region transcription start site region 117558
Tssr117559 12 104009000 to 104009035 35 - TSS region transcription start site region 117559
Tssr117560 12 104013640 to 104013658 18 - TSS region transcription start site region 117560
Tssr117561 12 104013753 to 104013776 23 - TSS region transcription start site region 117561
Tssr117562 12 104013779 to 104013788 9 - TSS region transcription start site region 117562
Gm37496 12 104021919 to 104024427 2508 - unclassified gene predicted gene, 37496
Serpina12 12 104028769 to 104044443 15674 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12
Gm31271 12 104032440 to 104037723 5283 + lncRNA gene predicted gene, 31271
Tssr117563 12 104032870 to 104032893 23 - TSS region transcription start site region 117563
Tssr117564 12 104035810 to 104035820 10 - TSS region transcription start site region 117564
Tssr117565 12 104035831 to 104035852 21 - TSS region transcription start site region 117565
Tssr117566 12 104044288 to 104044299 11 - TSS region transcription start site region 117566
Tssr117567 12 104044350 to 104044366 16 - TSS region transcription start site region 117567
Tssr117568 12 104044375 to 104044390 15 - TSS region transcription start site region 117568
Tssr117569 12 104044431 to 104044447 16 - TSS region transcription start site region 117569
Tssr114822 12 104052726 to 104052755 29 + TSS region transcription start site region 114822
Tssr114823 12 104077936 to 104077952 16 + TSS region transcription start site region 114823
Serpina4-ps1 12 104080649 to 104086724 6075 + pseudogene serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1
Tssr114824 12 104084174 to 104084185 11 + TSS region transcription start site region 114824
Tssr114825 12 104084220 to 104084231 11 + TSS region transcription start site region 114825
Tssr114826 12 104100982 to 104100998 16 + TSS region transcription start site region 114826
Tssr114827 12 104101020 to 104101028 8 + TSS region transcription start site region 114827
Tssr114828 12 104101087 to 104101098 11 + TSS region transcription start site region 114828
Serpina5 12 104101113 to 104106137 5024 + protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 5
Tssr114829 12 104101142 to 104101157 15 + TSS region transcription start site region 114829
Tssr114830 12 104101160 to 104101169 9 + TSS region transcription start site region 114830
Tssr114831 12 104101173 to 104101176 3 + TSS region transcription start site region 114831
Gm23289 12 104109283 to 104109390 107 + rRNA gene predicted gene, 23289
Serpina3a 12 104112724 to 104121896 9172 + protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 3A
Tssr114832 12 104127995 to 104128002 7 + TSS region transcription start site region 114832
Serpina3b 12 104127996 to 104139545 11549 + protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 3B
Serpina3c 12 104146907 to 104153931 7024 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 3C
Tssr117570 12 104153058 to 104153066 8 - TSS region transcription start site region 117570
Tssr117571 12 104153815 to 104153833 18 - TSS region transcription start site region 117571
Tssr117572 12 104153846 to 104153891 45 - TSS region transcription start site region 117572
Serpina3d-ps 12 104175571 to 104178310 2739 - pseudogene serine (or cysteine) peptidase inhibitor, clade A, member 3D, pseudogene
Serpina3e-ps 12 104189517 to 104192926 3409 - pseudogene serine (or cysteine) peptidase inhibitor, clade A, member 3E, pseudogene
Tssr117573 12 104194859 to 104194865 6 - TSS region transcription start site region 117573
Tssr114833 12 104214512 to 104214532 20 + TSS region transcription start site region 114833
Tssr114834 12 104214538 to 104214549 11 + TSS region transcription start site region 114834
Serpina3f 12 104214544 to 104221129 6585 + protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 3F
Gm8918 12 104228917 to 104230003 1086 - pseudogene predicted gene 8918
Tssr114835 12 104236126 to 104236150 24 + TSS region transcription start site region 114835
Tssr114836 12 104236239 to 104236245 6 + TSS region transcription start site region 114836
Serpina3g 12 104236242 to 104241934 5692 + protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 3G
Tssr114837 12 104241252 to 104241264 12 + TSS region transcription start site region 114837
Tssr114838 12 104247892 to 104247897 5 + TSS region transcription start site region 114838
Serpina3h 12 104247905 to 104253669 5764 + pseudogene serine (or cysteine) peptidase inhibitor, clade A, member 3H
Tssr114839 12 104263117 to 104263129 12 + TSS region transcription start site region 114839
Serpina3i 12 104263122 to 104269372 6250 + protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 3I
Tssr114840 12 104263133 to 104263158 25 + TSS region transcription start site region 114840
D12Mit102a 12 104298444 to 104298576 132 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 102a
Tssr114841 12 104300703 to 104300736 33 + TSS region transcription start site region 114841
D12Mit102b 12 104302190 to 104302388 198 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 102b
Serpina3j 12 104314553 to 104320725 6172 + protein coding gene serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3J