Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:103322159-103992170

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168 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Asb2 12 103321142 to 103356001 34859 - protein coding gene ankyrin repeat and SOCS box-containing 2
Cpgi5020 12 103324834 to 103325908 1074 CpG island CpG island 5020
Tssr117455 12 103326926 to 103326929 3 - TSS region transcription start site region 117455
Tssr117456 12 103336086 to 103336111 25 - TSS region transcription start site region 117456
Tssr117457 12 103336143 to 103336156 13 - TSS region transcription start site region 117457
Tssr117458 12 103336293 to 103336304 11 - TSS region transcription start site region 117458
Tssr117459 12 103336379 to 103336421 42 - TSS region transcription start site region 117459
Tssr114800 12 103336855 to 103336882 27 + TSS region transcription start site region 114800
Tssr114801 12 103336888 to 103336899 11 + TSS region transcription start site region 114801
Tssr117460 12 103336892 to 103336911 19 - TSS region transcription start site region 117460
Gm15523 12 103336906 to 103348057 11151 + antisense lncRNA gene predicted gene 15523
Tssr117461 12 103336917 to 103336936 19 - TSS region transcription start site region 117461
Tssr117462 12 103336937 to 103336959 22 - TSS region transcription start site region 117462
Tssr114802 12 103337112 to 103337121 9 + TSS region transcription start site region 114802
Tssr117463 12 103338199 to 103338206 7 - TSS region transcription start site region 117463
Tssr117464 12 103338223 to 103338230 7 - TSS region transcription start site region 117464
Tssr117465 12 103338255 to 103338281 26 - TSS region transcription start site region 117465
Tssr117466 12 103338289 to 103338313 24 - TSS region transcription start site region 117466
Tssr117467 12 103338314 to 103338399 85 - TSS region transcription start site region 117467
Tssr3928 12 103338414 to 103338421 7 - TSS region transcription start site region 3928
Tssr117468 12 103338503 to 103338547 44 - TSS region transcription start site region 117468
Tssr114803 12 103341522 to 103341554 32 + TSS region transcription start site region 114803
Tssr114804 12 103346242 to 103346259 17 + TSS region transcription start site region 114804
Tssr114805 12 103346767 to 103346794 27 + TSS region transcription start site region 114805
Tssr117469 12 103346891 to 103346923 32 - TSS region transcription start site region 117469
Tssr114806 12 103355278 to 103355295 17 + TSS region transcription start site region 114806
Tssr117470 12 103355735 to 103355746 11 - TSS region transcription start site region 117470
Tssr117471 12 103355798 to 103355825 27 - TSS region transcription start site region 117471
Tssr117472 12 103355967 to 103356017 50 - TSS region transcription start site region 117472
Gm45777 12 103368772 to 103372467 3695 + pseudogene predicted gene 45777
Tssr117473 12 103382550 to 103382551 1 - TSS region transcription start site region 117473
Tssr117474 12 103382566 to 103382577 11 - TSS region transcription start site region 117474
Tssr117475 12 103382591 to 103382592 1 - TSS region transcription start site region 117475
Cpgi5021 12 103388545 to 103389481 936 CpG island CpG island 5021
Tssr114807 12 103388656 to 103388723 67 + TSS region transcription start site region 114807
Otub2 12 103388682 to 103406350 17668 + protein coding gene OTU domain, ubiquitin aldehyde binding 2
Tssr114808 12 103388727 to 103388765 38 + TSS region transcription start site region 114808
Tssr117476 12 103391553 to 103391557 4 - TSS region transcription start site region 117476
Tssr114809 12 103393878 to 103393889 11 + TSS region transcription start site region 114809
9330161L09Rik 12 103406822 to 103407820 998 - unclassified gene RIKEN cDNA 9330161L09 gene
Ddx24 12 103407982 to 103425830 17848 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 24
Gm47260 12 103412492 to 103415596 3104 - unclassified gene predicted gene, 47260
Tssr117477 12 103416223 to 103416243 20 - TSS region transcription start site region 117477
Cpgi5022 12 103425349 to 103426122 773 CpG island CpG island 5022
Tssr117478 12 103425803 to 103425855 52 - TSS region transcription start site region 117478
Gm40560 12 103429650 to 103431451 1801 - lncRNA gene predicted gene, 40560
Ifi27 12 103434211 to 103440239 6028 + protein coding gene interferon, alpha-inducible protein 27
Tssr114810 12 103434214 to 103434281 67 + TSS region transcription start site region 114810
Ifi27l2a 12 103442167 to 103443680 1513 - protein coding gene interferon, alpha-inducible protein 27 like 2A
Tssr114811 12 103442317 to 103442346 29 + TSS region transcription start site region 114811
Tssr117479 12 103442359 to 103442378 19 - TSS region transcription start site region 117479
Tssr117480 12 103443653 to 103443673 20 - TSS region transcription start site region 117480
Ifi27l2b 12 103450898 to 103457223 6325 - protein coding gene interferon, alpha-inducible protein 27 like 2B
Tssr114812 12 103451092 to 103451132 40 + TSS region transcription start site region 114812
Tssr117481 12 103457188 to 103457192 4 - TSS region transcription start site region 117481
Tssr117482 12 103457195 to 103457270 75 - TSS region transcription start site region 117482
Tssr117483 12 103457278 to 103457282 4 - TSS region transcription start site region 117483
Gm47267 12 103483442 to 103486681 3239 + lincRNA gene predicted gene, 47267
Cpgi5023 12 103531978 to 103533403 1425 CpG island CpG island 5023
Ppp4r4 12 103532283 to 103613831 81548 + protein coding gene protein phosphatase 4, regulatory subunit 4
Tssr114813 12 103532435 to 103532485 50 + TSS region transcription start site region 114813
Tssr114814 12 103532486 to 103532503 17 + TSS region transcription start site region 114814
Tssr114815 12 103550359 to 103550363 4 + TSS region transcription start site region 114815
Tssr114816 12 103551679 to 103551720 41 + TSS region transcription start site region 114816
Tssr117484 12 103609790 to 103609803 13 - TSS region transcription start site region 117484
Serpina10 12 103616675 to 103631490 14815 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10
Tssr117485 12 103631404 to 103631444 40 - TSS region transcription start site region 117485
Tssr114817 12 103640424 to 103640428 4 + TSS region transcription start site region 114817
Gm18501 12 103641406 to 103642069 663 - pseudogene predicted gene, 18501
Serpina6 12 103646630 to 103657212 10582 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 6
Tnfp 12 103646630 to 103657212 10582 QTL tumor necrosis factor protection
Tssr117486 12 103646989 to 103647001 12 - TSS region transcription start site region 117486
Tssr117487 12 103653491 to 103653501 10 - TSS region transcription start site region 117487
Tssr117488 12 103655052 to 103655078 26 - TSS region transcription start site region 117488
Tssr117489 12 103655857 to 103655896 39 - TSS region transcription start site region 117489
Tssr117490 12 103656365 to 103656403 38 - TSS region transcription start site region 117490
Tssr117491 12 103657095 to 103657112 17 - TSS region transcription start site region 117491
Tssr117492 12 103657123 to 103657134 11 - TSS region transcription start site region 117492
Tssr117493 12 103657159 to 103657170 11 - TSS region transcription start site region 117493
Tssr117494 12 103659889 to 103659910 21 - TSS region transcription start site region 117494
Serpina16 12 103668808 to 103676139 7331 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 16
Tssr117495 12 103676718 to 103676729 11 - TSS region transcription start site region 117495
Tssr117496 12 103676765 to 103676773 8 - TSS region transcription start site region 117496
Gm46373 12 103681704 to 103688918 7214 + lncRNA gene predicted gene, 46373
Serpina1f 12 103688044 to 103695529 7485 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 1F
Tssr117497 12 103694032 to 103694049 17 - TSS region transcription start site region 117497
Tssr117498 12 103694657 to 103694673 16 - TSS region transcription start site region 117498
Tssr117499 12 103694674 to 103694680 6 - TSS region transcription start site region 117499
Tssr117500 12 103694686 to 103694703 17 - TSS region transcription start site region 117500
Tssr117501 12 103694713 to 103694718 5 - TSS region transcription start site region 117501
Tssr117502 12 103695017 to 103695023 6 - TSS region transcription start site region 117502
Tssr117503 12 103695439 to 103695454 15 - TSS region transcription start site region 117503
Tssr117504 12 103695527 to 103695536 9 - TSS region transcription start site region 117504
Tssr117505 12 103695580 to 103695592 12 - TSS region transcription start site region 117505
Tssr117506 12 103701126 to 103701131 5 - TSS region transcription start site region 117506
Tssr117507 12 103701177 to 103701184 7 - TSS region transcription start site region 117507
Gm5656 12 103702271 to 103704598 2327 - pseudogene predicted gene 5656
Tssr117508 12 103707305 to 103707314 9 - TSS region transcription start site region 117508
Gm17142 12 103714549 to 103716697 2148 - pseudogene predicted gene 17142
Serpina1b 12 103728156 to 103738189 10033 - protein coding gene serine (or cysteine) preptidase inhibitor, clade A, member 1B
Tssr117509 12 103729277 to 103729297 20 - TSS region transcription start site region 117509
Tssr117510 12 103729371 to 103729391 20 - TSS region transcription start site region 117510
Tssr117511 12 103730276 to 103730304 28 - TSS region transcription start site region 117511
Tssr117512 12 103730351 to 103730370 19 - TSS region transcription start site region 117512
Tssr117513 12 103730402 to 103730424 22 - TSS region transcription start site region 117513
Tssr117514 12 103732533 to 103732565 32 - TSS region transcription start site region 117514
Tssr117515 12 103737902 to 103737930 28 - TSS region transcription start site region 117515
Tssr117516 12 103740215 to 103740220 5 - TSS region transcription start site region 117516
Gm17042 12 103744860 to 103754733 9873 - pseudogene predicted gene 17042
Serpina1d 12 103763594 to 103773592 9998 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 1D
Tssr114818 12 103763751 to 103763795 44 + TSS region transcription start site region 114818
Tssr117517 12 103763795 to 103763840 45 - TSS region transcription start site region 117517
Tssr117518 12 103764815 to 103764826 11 - TSS region transcription start site region 117518
Tssr117519 12 103765730 to 103765753 23 - TSS region transcription start site region 117519
Tssr117520 12 103765808 to 103765836 28 - TSS region transcription start site region 117520
Tssr117521 12 103767884 to 103767907 23 - TSS region transcription start site region 117521
Tssr117522 12 103768028 to 103768047 19 - TSS region transcription start site region 117522
Tssr117523 12 103773564 to 103773579 15 - TSS region transcription start site region 117523
Tssr117524 12 103773599 to 103773610 11 - TSS region transcription start site region 117524
Tssr117525 12 103773619 to 103773630 11 - TSS region transcription start site region 117525
Tssr117526 12 103773631 to 103773640 9 - TSS region transcription start site region 117526
Gm17043 12 103786930 to 103804362 17432 - pseudogene predicted gene 17043
Gm8893 12 103817856 to 103822243 4387 - pseudogene predicted gene 8893
Tssr117527 12 103828031 to 103828062 31 - TSS region transcription start site region 117527
Gm6918 12 103841684 to 103842339 655 - pseudogene predicted gene 6918
Serpina1a 12 103853589 to 103863562 9973 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 1A
Tssr117528 12 103855866 to 103855904 38 - TSS region transcription start site region 117528
Tssr117529 12 103863262 to 103863299 37 - TSS region transcription start site region 117529
Tssr117530 12 103863595 to 103863630 35 - TSS region transcription start site region 117530
Tssr117531 12 103865672 to 103865685 13 - TSS region transcription start site region 117531
Tssr117532 12 103865726 to 103865740 14 - TSS region transcription start site region 117532
Tssr117533 12 103865758 to 103865772 14 - TSS region transcription start site region 117533
Tssr117534 12 103865774 to 103865783 9 - TSS region transcription start site region 117534
Gm8895 12 103880856 to 103881511 655 - pseudogene predicted gene 8895
Serpina1c 12 103894926 to 103904887 9961 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 1C
Tssr3929 12 103895081 to 103895087 6 + TSS region transcription start site region 3929
Tssr114819 12 103895087 to 103895128 41 + TSS region transcription start site region 114819
Tssr117535 12 103895125 to 103895167 42 - TSS region transcription start site region 117535
B430119L08Rik 12 103895897 to 103898784 2887 + antisense lncRNA gene RIKEN cDNA B430119L08 gene
Tssr117536 12 103897064 to 103897095 31 - TSS region transcription start site region 117536
Tssr117537 12 103897206 to 103897238 32 - TSS region transcription start site region 117537
Tssr3930 12 103899238 to 103899277 39 - TSS region transcription start site region 3930
Tssr117538 12 103904892 to 103904901 9 - TSS region transcription start site region 117538
Tssr117539 12 103904944 to 103904955 11 - TSS region transcription start site region 117539
Tssr117540 12 103907030 to 103907031 1 - TSS region transcription start site region 117540
Gm17198 12 103919548 to 103926291 6743 - pseudogene predicted gene 17198
Serpina1e 12 103946931 to 103956897 9966 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 1E
Tssr117541 12 103947112 to 103947141 29 - TSS region transcription start site region 117541
Tssr114820 12 103947126 to 103947132 6 + TSS region transcription start site region 114820
Tssr117542 12 103948159 to 103948169 10 - TSS region transcription start site region 117542
Tssr117543 12 103949150 to 103949172 22 - TSS region transcription start site region 117543
Tssr117544 12 103949280 to 103949317 37 - TSS region transcription start site region 117544
Tssr114821 12 103950790 to 103950837 47 + TSS region transcription start site region 114821
Tssr117545 12 103951082 to 103951084 2 - TSS region transcription start site region 117545
Tssr117546 12 103951256 to 103951267 11 - TSS region transcription start site region 117546
Tssr117547 12 103951293 to 103951307 14 - TSS region transcription start site region 117547
Tssr117548 12 103951386 to 103951412 26 - TSS region transcription start site region 117548
Tssr117549 12 103956569 to 103956592 23 - TSS region transcription start site region 117549
Tssr117550 12 103956891 to 103956901 10 - TSS region transcription start site region 117550
Tssr3931 12 103958862 to 103958869 7 - TSS region transcription start site region 3931
Tssr117551 12 103958878 to 103958889 11 - TSS region transcription start site region 117551
Tssr117552 12 103958894 to 103958919 25 - TSS region transcription start site region 117552
Tssr117553 12 103958924 to 103958935 11 - TSS region transcription start site region 117553
Tssr117554 12 103958939 to 103958945 6 - TSS region transcription start site region 117554
Serpina11 12 103980243 to 103989957 9714 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
Gm28577 12 103984792 to 103996579 11787 - unclassified non-coding RNA gene predicted gene 28577
Tssr117555 12 103989919 to 103989946 27 - TSS region transcription start site region 117555
Tssr117556 12 103989950 to 103989972 22 - TSS region transcription start site region 117556