Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:103201822-103612820

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prima1 12 103196908 to 103242150 45242 - protein coding gene proline rich membrane anchor 1
Tssr114794 12 103232622 to 103232626 4 + TSS region transcription start site region 114794
Tssr117452 12 103236016 to 103236041 25 - TSS region transcription start site region 117452
Cpgi5018 12 103241522 to 103243053 1531 CpG island CpG island 5018
Tssr117453 12 103242143 to 103242148 5 - TSS region transcription start site region 117453
D12Mit99 12 103273040 to 103273190 150 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 99
Tssr114795 12 103311010 to 103311030 20 + TSS region transcription start site region 114795
Fam181a 12 103311021 to 103317067 6046 + protein coding gene family with sequence similarity 181, member A
Gm29508 12 103312368 to 103314769 2401 - antisense lncRNA gene predicted gene 29508
Tssr117454 12 103314757 to 103314773 16 - TSS region transcription start site region 117454
Cpgi5019 12 103314842 to 103315448 606 CpG island CpG island 5019
Tssr114796 12 103314857 to 103314892 35 + TSS region transcription start site region 114796
Tssr114797 12 103314944 to 103314962 18 + TSS region transcription start site region 114797
Tssr114798 12 103314967 to 103314974 7 + TSS region transcription start site region 114798
Tssr114799 12 103314978 to 103314989 11 + TSS region transcription start site region 114799
Asb2 12 103321142 to 103356001 34859 - protein coding gene ankyrin repeat and SOCS box-containing 2
Cpgi5020 12 103324834 to 103325908 1074 CpG island CpG island 5020
Tssr117455 12 103326926 to 103326929 3 - TSS region transcription start site region 117455
Tssr117456 12 103336086 to 103336111 25 - TSS region transcription start site region 117456
Tssr117457 12 103336143 to 103336156 13 - TSS region transcription start site region 117457
Tssr117458 12 103336293 to 103336304 11 - TSS region transcription start site region 117458
Tssr117459 12 103336379 to 103336421 42 - TSS region transcription start site region 117459
Tssr114800 12 103336855 to 103336882 27 + TSS region transcription start site region 114800
Tssr114801 12 103336888 to 103336899 11 + TSS region transcription start site region 114801
Tssr117460 12 103336892 to 103336911 19 - TSS region transcription start site region 117460
Gm15523 12 103336906 to 103348057 11151 + antisense lncRNA gene predicted gene 15523
Tssr117461 12 103336917 to 103336936 19 - TSS region transcription start site region 117461
Tssr117462 12 103336937 to 103336959 22 - TSS region transcription start site region 117462
Tssr114802 12 103337112 to 103337121 9 + TSS region transcription start site region 114802
Tssr117463 12 103338199 to 103338206 7 - TSS region transcription start site region 117463
Tssr117464 12 103338223 to 103338230 7 - TSS region transcription start site region 117464
Tssr117465 12 103338255 to 103338281 26 - TSS region transcription start site region 117465
Tssr117466 12 103338289 to 103338313 24 - TSS region transcription start site region 117466
Tssr117467 12 103338314 to 103338399 85 - TSS region transcription start site region 117467
Tssr3928 12 103338414 to 103338421 7 - TSS region transcription start site region 3928
Tssr117468 12 103338503 to 103338547 44 - TSS region transcription start site region 117468
Tssr114803 12 103341522 to 103341554 32 + TSS region transcription start site region 114803
Tssr114804 12 103346242 to 103346259 17 + TSS region transcription start site region 114804
Tssr114805 12 103346767 to 103346794 27 + TSS region transcription start site region 114805
Tssr117469 12 103346891 to 103346923 32 - TSS region transcription start site region 117469
Tssr114806 12 103355278 to 103355295 17 + TSS region transcription start site region 114806
Tssr117470 12 103355735 to 103355746 11 - TSS region transcription start site region 117470
Tssr117471 12 103355798 to 103355825 27 - TSS region transcription start site region 117471
Tssr117472 12 103355967 to 103356017 50 - TSS region transcription start site region 117472
Gm45777 12 103368772 to 103372467 3695 + pseudogene predicted gene 45777
Tssr117473 12 103382550 to 103382551 1 - TSS region transcription start site region 117473
Tssr117474 12 103382566 to 103382577 11 - TSS region transcription start site region 117474
Tssr117475 12 103382591 to 103382592 1 - TSS region transcription start site region 117475
Cpgi5021 12 103388545 to 103389481 936 CpG island CpG island 5021
Tssr114807 12 103388656 to 103388723 67 + TSS region transcription start site region 114807
Otub2 12 103388682 to 103406350 17668 + protein coding gene OTU domain, ubiquitin aldehyde binding 2
Tssr114808 12 103388727 to 103388765 38 + TSS region transcription start site region 114808
Tssr117476 12 103391553 to 103391557 4 - TSS region transcription start site region 117476
Tssr114809 12 103393878 to 103393889 11 + TSS region transcription start site region 114809
9330161L09Rik 12 103406822 to 103407820 998 - unclassified gene RIKEN cDNA 9330161L09 gene
Ddx24 12 103407982 to 103425830 17848 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 24
Gm47260 12 103412492 to 103415596 3104 - unclassified gene predicted gene, 47260
Tssr117477 12 103416223 to 103416243 20 - TSS region transcription start site region 117477
Cpgi5022 12 103425349 to 103426122 773 CpG island CpG island 5022
Tssr117478 12 103425803 to 103425855 52 - TSS region transcription start site region 117478
Gm40560 12 103429650 to 103431451 1801 - lncRNA gene predicted gene, 40560
Ifi27 12 103434211 to 103440239 6028 + protein coding gene interferon, alpha-inducible protein 27
Tssr114810 12 103434214 to 103434281 67 + TSS region transcription start site region 114810
Ifi27l2a 12 103442167 to 103443680 1513 - protein coding gene interferon, alpha-inducible protein 27 like 2A
Tssr114811 12 103442317 to 103442346 29 + TSS region transcription start site region 114811
Tssr117479 12 103442359 to 103442378 19 - TSS region transcription start site region 117479
Tssr117480 12 103443653 to 103443673 20 - TSS region transcription start site region 117480
Ifi27l2b 12 103450898 to 103457223 6325 - protein coding gene interferon, alpha-inducible protein 27 like 2B
Tssr114812 12 103451092 to 103451132 40 + TSS region transcription start site region 114812
Tssr117481 12 103457188 to 103457192 4 - TSS region transcription start site region 117481
Tssr117482 12 103457195 to 103457270 75 - TSS region transcription start site region 117482
Tssr117483 12 103457278 to 103457282 4 - TSS region transcription start site region 117483
Gm47267 12 103483442 to 103486681 3239 + lincRNA gene predicted gene, 47267
Cpgi5023 12 103531978 to 103533403 1425 CpG island CpG island 5023
Ppp4r4 12 103532283 to 103613831 81548 + protein coding gene protein phosphatase 4, regulatory subunit 4
Tssr114813 12 103532435 to 103532485 50 + TSS region transcription start site region 114813
Tssr114814 12 103532486 to 103532503 17 + TSS region transcription start site region 114814
Tssr114815 12 103550359 to 103550363 4 + TSS region transcription start site region 114815
Tssr114816 12 103551679 to 103551720 41 + TSS region transcription start site region 114816
Tssr117484 12 103609790 to 103609803 13 - TSS region transcription start site region 117484