Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:102929967-103699974

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127 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi5016 12 102948777 to 102949920 1143 CpG island CpG island 5016
Tssr114787 12 102948843 to 102948874 31 + TSS region transcription start site region 114787
Unc79 12 102948859 to 103184065 235206 + protein coding gene unc-79 homolog
Tssr114788 12 102949202 to 102949233 31 + TSS region transcription start site region 114788
Tssr114789 12 102949234 to 102949279 45 + TSS region transcription start site region 114789
Tssr114790 12 102949450 to 102949487 37 + TSS region transcription start site region 114790
Tssr114791 12 102954087 to 102954091 4 + TSS region transcription start site region 114791
Gm46372 12 102965900 to 102970012 4112 + lncRNA gene predicted gene, 46372
Gm44324 12 102987829 to 102987963 134 + miRNA gene predicted gene, 44324
Tssr114792 12 102993509 to 102993522 13 + TSS region transcription start site region 114792
Ath21 12 102995320 to 102995424 104 QTL atherosclerosis 21
D12Mit7 12 102995320 to 102995424 104 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 7
D12Mit289 12 103011641 to 103011758 117 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 289
Gm47201 12 103027949 to 103028412 463 - pseudogene predicted gene, 47201
Tssr114793 12 103062378 to 103062379 1 + TSS region transcription start site region 114793
Gm27976 12 103128189 to 103128350 161 + unclassified non-coding RNA gene predicted gene, 27976
D12Mit166 12 103179490 to 103179630 140 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 166
Cpgi5017 12 103189818 to 103190056 238 CpG island CpG island 5017
Prima1 12 103196908 to 103242150 45242 - protein coding gene proline rich membrane anchor 1
Tssr114794 12 103232622 to 103232626 4 + TSS region transcription start site region 114794
Tssr117452 12 103236016 to 103236041 25 - TSS region transcription start site region 117452
Cpgi5018 12 103241522 to 103243053 1531 CpG island CpG island 5018
Tssr117453 12 103242143 to 103242148 5 - TSS region transcription start site region 117453
D12Mit99 12 103273040 to 103273190 150 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 99
Tssr114795 12 103311010 to 103311030 20 + TSS region transcription start site region 114795
Fam181a 12 103311021 to 103317067 6046 + protein coding gene family with sequence similarity 181, member A
Gm29508 12 103312368 to 103314769 2401 - antisense lncRNA gene predicted gene 29508
Tssr117454 12 103314757 to 103314773 16 - TSS region transcription start site region 117454
Cpgi5019 12 103314842 to 103315448 606 CpG island CpG island 5019
Tssr114796 12 103314857 to 103314892 35 + TSS region transcription start site region 114796
Tssr114797 12 103314944 to 103314962 18 + TSS region transcription start site region 114797
Tssr114798 12 103314967 to 103314974 7 + TSS region transcription start site region 114798
Tssr114799 12 103314978 to 103314989 11 + TSS region transcription start site region 114799
Asb2 12 103321142 to 103356001 34859 - protein coding gene ankyrin repeat and SOCS box-containing 2
Cpgi5020 12 103324834 to 103325908 1074 CpG island CpG island 5020
Tssr117455 12 103326926 to 103326929 3 - TSS region transcription start site region 117455
Tssr117456 12 103336086 to 103336111 25 - TSS region transcription start site region 117456
Tssr117457 12 103336143 to 103336156 13 - TSS region transcription start site region 117457
Tssr117458 12 103336293 to 103336304 11 - TSS region transcription start site region 117458
Tssr117459 12 103336379 to 103336421 42 - TSS region transcription start site region 117459
Tssr114800 12 103336855 to 103336882 27 + TSS region transcription start site region 114800
Tssr114801 12 103336888 to 103336899 11 + TSS region transcription start site region 114801
Tssr117460 12 103336892 to 103336911 19 - TSS region transcription start site region 117460
Gm15523 12 103336906 to 103348057 11151 + antisense lncRNA gene predicted gene 15523
Tssr117461 12 103336917 to 103336936 19 - TSS region transcription start site region 117461
Tssr117462 12 103336937 to 103336959 22 - TSS region transcription start site region 117462
Tssr114802 12 103337112 to 103337121 9 + TSS region transcription start site region 114802
Tssr117463 12 103338199 to 103338206 7 - TSS region transcription start site region 117463
Tssr117464 12 103338223 to 103338230 7 - TSS region transcription start site region 117464
Tssr117465 12 103338255 to 103338281 26 - TSS region transcription start site region 117465
Tssr117466 12 103338289 to 103338313 24 - TSS region transcription start site region 117466
Tssr117467 12 103338314 to 103338399 85 - TSS region transcription start site region 117467
Tssr3928 12 103338414 to 103338421 7 - TSS region transcription start site region 3928
Tssr117468 12 103338503 to 103338547 44 - TSS region transcription start site region 117468
Tssr114803 12 103341522 to 103341554 32 + TSS region transcription start site region 114803
Tssr114804 12 103346242 to 103346259 17 + TSS region transcription start site region 114804
Tssr114805 12 103346767 to 103346794 27 + TSS region transcription start site region 114805
Tssr117469 12 103346891 to 103346923 32 - TSS region transcription start site region 117469
Tssr114806 12 103355278 to 103355295 17 + TSS region transcription start site region 114806
Tssr117470 12 103355735 to 103355746 11 - TSS region transcription start site region 117470
Tssr117471 12 103355798 to 103355825 27 - TSS region transcription start site region 117471
Tssr117472 12 103355967 to 103356017 50 - TSS region transcription start site region 117472
Gm45777 12 103368772 to 103372467 3695 + pseudogene predicted gene 45777
Tssr117473 12 103382550 to 103382551 1 - TSS region transcription start site region 117473
Tssr117474 12 103382566 to 103382577 11 - TSS region transcription start site region 117474
Tssr117475 12 103382591 to 103382592 1 - TSS region transcription start site region 117475
Cpgi5021 12 103388545 to 103389481 936 CpG island CpG island 5021
Tssr114807 12 103388656 to 103388723 67 + TSS region transcription start site region 114807
Otub2 12 103388682 to 103406350 17668 + protein coding gene OTU domain, ubiquitin aldehyde binding 2
Tssr114808 12 103388727 to 103388765 38 + TSS region transcription start site region 114808
Tssr117476 12 103391553 to 103391557 4 - TSS region transcription start site region 117476
Tssr114809 12 103393878 to 103393889 11 + TSS region transcription start site region 114809
9330161L09Rik 12 103406822 to 103407820 998 - unclassified gene RIKEN cDNA 9330161L09 gene
Ddx24 12 103407982 to 103425830 17848 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 24
Gm47260 12 103412492 to 103415596 3104 - unclassified gene predicted gene, 47260
Tssr117477 12 103416223 to 103416243 20 - TSS region transcription start site region 117477
Cpgi5022 12 103425349 to 103426122 773 CpG island CpG island 5022
Tssr117478 12 103425803 to 103425855 52 - TSS region transcription start site region 117478
Gm40560 12 103429650 to 103431451 1801 - lncRNA gene predicted gene, 40560
Ifi27 12 103434211 to 103440239 6028 + protein coding gene interferon, alpha-inducible protein 27
Tssr114810 12 103434214 to 103434281 67 + TSS region transcription start site region 114810
Ifi27l2a 12 103442167 to 103443680 1513 - protein coding gene interferon, alpha-inducible protein 27 like 2A
Tssr114811 12 103442317 to 103442346 29 + TSS region transcription start site region 114811
Tssr117479 12 103442359 to 103442378 19 - TSS region transcription start site region 117479
Tssr117480 12 103443653 to 103443673 20 - TSS region transcription start site region 117480
Ifi27l2b 12 103450898 to 103457223 6325 - protein coding gene interferon, alpha-inducible protein 27 like 2B
Tssr114812 12 103451092 to 103451132 40 + TSS region transcription start site region 114812
Tssr117481 12 103457188 to 103457192 4 - TSS region transcription start site region 117481
Tssr117482 12 103457195 to 103457270 75 - TSS region transcription start site region 117482
Tssr117483 12 103457278 to 103457282 4 - TSS region transcription start site region 117483
Gm47267 12 103483442 to 103486681 3239 + lincRNA gene predicted gene, 47267
Cpgi5023 12 103531978 to 103533403 1425 CpG island CpG island 5023
Ppp4r4 12 103532283 to 103613831 81548 + protein coding gene protein phosphatase 4, regulatory subunit 4
Tssr114813 12 103532435 to 103532485 50 + TSS region transcription start site region 114813
Tssr114814 12 103532486 to 103532503 17 + TSS region transcription start site region 114814
Tssr114815 12 103550359 to 103550363 4 + TSS region transcription start site region 114815
Tssr114816 12 103551679 to 103551720 41 + TSS region transcription start site region 114816
Tssr117484 12 103609790 to 103609803 13 - TSS region transcription start site region 117484
Serpina10 12 103616675 to 103631490 14815 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10
Tssr117485 12 103631404 to 103631444 40 - TSS region transcription start site region 117485
Tssr114817 12 103640424 to 103640428 4 + TSS region transcription start site region 114817
Gm18501 12 103641406 to 103642069 663 - pseudogene predicted gene, 18501
Serpina6 12 103646630 to 103657212 10582 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 6
Tnfp 12 103646630 to 103657212 10582 QTL tumor necrosis factor protection
Tssr117486 12 103646989 to 103647001 12 - TSS region transcription start site region 117486
Tssr117487 12 103653491 to 103653501 10 - TSS region transcription start site region 117487
Tssr117488 12 103655052 to 103655078 26 - TSS region transcription start site region 117488
Tssr117489 12 103655857 to 103655896 39 - TSS region transcription start site region 117489
Tssr117490 12 103656365 to 103656403 38 - TSS region transcription start site region 117490
Tssr117491 12 103657095 to 103657112 17 - TSS region transcription start site region 117491
Tssr117492 12 103657123 to 103657134 11 - TSS region transcription start site region 117492
Tssr117493 12 103657159 to 103657170 11 - TSS region transcription start site region 117493
Tssr117494 12 103659889 to 103659910 21 - TSS region transcription start site region 117494
Serpina16 12 103668808 to 103676139 7331 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 16
Tssr117495 12 103676718 to 103676729 11 - TSS region transcription start site region 117495
Tssr117496 12 103676765 to 103676773 8 - TSS region transcription start site region 117496
Gm46373 12 103681704 to 103688918 7214 + lncRNA gene predicted gene, 46373
Serpina1f 12 103688044 to 103695529 7485 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A, member 1F
Tssr117497 12 103694032 to 103694049 17 - TSS region transcription start site region 117497
Tssr117498 12 103694657 to 103694673 16 - TSS region transcription start site region 117498
Tssr117499 12 103694674 to 103694680 6 - TSS region transcription start site region 117499
Tssr117500 12 103694686 to 103694703 17 - TSS region transcription start site region 117500
Tssr117501 12 103694713 to 103694718 5 - TSS region transcription start site region 117501
Tssr117502 12 103695017 to 103695023 6 - TSS region transcription start site region 117502
Tssr117503 12 103695439 to 103695454 15 - TSS region transcription start site region 117503
Tssr117504 12 103695527 to 103695536 9 - TSS region transcription start site region 117504
Tssr117505 12 103695580 to 103695592 12 - TSS region transcription start site region 117505