Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:102659087-103249091

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Itpk1 12 102568583 to 102704869 136286 - protein coding gene inositol 1,3,4-triphosphate 5/6 kinase
Gm28373 12 102673017 to 102727333 54316 - unclassified non-coding RNA gene predicted gene 28373
Tssr117438 12 102673592 to 102673601 9 - TSS region transcription start site region 117438
Mir1936 12 102684928 to 102685020 92 - miRNA gene microRNA 1936
Tssr117439 12 102695549 to 102695582 33 - TSS region transcription start site region 117439
Gm40559 12 102695895 to 102702318 6423 + lncRNA gene predicted gene, 40559
Cpgi5011 12 102704049 to 102705830 1781 CpG island CpG island 5011
Tssr117440 12 102704896 to 102704980 84 - TSS region transcription start site region 117440
Gm30296 12 102710206 to 102733930 23724 + lncRNA gene predicted gene, 30296
Gm28051 12 102719975 to 102757765 37790 - protein coding gene predicted gene, 28051
Gm21971 12 102719977 to 102727322 7345 - lincRNA gene predicted gene 21971
Tssr117441 12 102727332 to 102727354 22 - TSS region transcription start site region 117441
Tssr117442 12 102730414 to 102730428 14 - TSS region transcription start site region 117442
Tssr114770 12 102730701 to 102730717 16 + TSS region transcription start site region 114770
Gm20604 12 102741732 to 102758672 16940 - protein coding gene predicted gene 20604
Moap1 12 102742230 to 102743661 1431 - protein coding gene modulator of apoptosis 1
Cpgi5012 12 102743084 to 102744146 1062 CpG island CpG island 5012
Tssr3927 12 102743598 to 102743613 15 - TSS region transcription start site region 3927
Tssr117443 12 102743625 to 102743688 63 - TSS region transcription start site region 117443
Tssr114771 12 102743699 to 102743711 12 + TSS region transcription start site region 114771
Tssr114772 12 102743712 to 102743747 35 + TSS region transcription start site region 114772
Tmem251 12 102743712 to 102745406 1694 + protein coding gene transmembrane protein 251
Tssr114773 12 102743750 to 102743776 26 + TSS region transcription start site region 114773
Tssr114774 12 102743791 to 102743802 11 + TSS region transcription start site region 114774
Tssr114775 12 102743975 to 102743985 10 + TSS region transcription start site region 114775
Tssr114776 12 102743992 to 102744008 16 + TSS region transcription start site region 114776
Tssr114777 12 102744021 to 102744047 26 + TSS region transcription start site region 114777
Gon7 12 102753275 to 102757803 4528 - protein coding gene GON7, KEOPS complex subunit homolog
Cpgi5013 12 102757227 to 102758443 1216 CpG island CpG island 5013
Tssr117444 12 102757690 to 102757695 5 - TSS region transcription start site region 117444
Tssr114778 12 102757748 to 102757759 11 + TSS region transcription start site region 114778
Tssr117445 12 102757750 to 102757759 9 - TSS region transcription start site region 117445
Tssr114779 12 102757765 to 102757776 11 + TSS region transcription start site region 114779
Tssr117446 12 102757769 to 102757809 40 - TSS region transcription start site region 117446
Tssr114780 12 102757782 to 102757798 16 + TSS region transcription start site region 114780
Tssr114781 12 102757936 to 102757954 18 + TSS region transcription start site region 114781
Tssr114782 12 102757965 to 102758010 45 + TSS region transcription start site region 114782
Ubr7 12 102757975 to 102777701 19726 + protein coding gene ubiquitin protein ligase E3 component n-recognin 7 (putative)
Tssr114783 12 102758012 to 102758024 12 + TSS region transcription start site region 114783
Gm47042 12 102764323 to 102764712 389 - pseudogene predicted gene, 47042
Btbd7 12 102780797 to 102878471 97674 - protein coding gene BTB (POZ) domain containing 7
Gm20079 12 102797377 to 102799441 2064 - pseudogene predicted gene, 20079
Tssr117447 12 102818345 to 102818348 3 - TSS region transcription start site region 117447
Gm47167 12 102838108 to 102874891 36783 + antisense lncRNA gene predicted gene, 47167
Tssr117448 12 102855748 to 102855785 37 - TSS region transcription start site region 117448
Gm47166 12 102859741 to 102861449 1708 - unclassified gene predicted gene, 47166
Tssr117449 12 102860300 to 102860302 2 - TSS region transcription start site region 117449
Gm7143 12 102866631 to 102867489 858 - pseudogene predicted gene 7143
Tssr114784 12 102877290 to 102877313 23 + TSS region transcription start site region 114784
Cpgi5014 12 102877302 to 102878868 1566 CpG island CpG island 5014
Tssr117450 12 102878408 to 102878449 41 - TSS region transcription start site region 117450
Tssr117451 12 102878455 to 102878477 22 - TSS region transcription start site region 117451
Cpgi5015 12 102899212 to 102899448 236 CpG island CpG island 5015
Tssr114785 12 102899255 to 102899263 8 + TSS region transcription start site region 114785
Tssr114786 12 102899271 to 102899321 50 + TSS region transcription start site region 114786
Cox8c 12 102899316 to 102900526 1210 + protein coding gene cytochrome c oxidase subunit 8C
Cpgi5016 12 102948777 to 102949920 1143 CpG island CpG island 5016
Tssr114787 12 102948843 to 102948874 31 + TSS region transcription start site region 114787
Unc79 12 102948859 to 103184065 235206 + protein coding gene unc-79 homolog
Tssr114788 12 102949202 to 102949233 31 + TSS region transcription start site region 114788
Tssr114789 12 102949234 to 102949279 45 + TSS region transcription start site region 114789
Tssr114790 12 102949450 to 102949487 37 + TSS region transcription start site region 114790
Tssr114791 12 102954087 to 102954091 4 + TSS region transcription start site region 114791
Gm46372 12 102965900 to 102970012 4112 + lncRNA gene predicted gene, 46372
Gm44324 12 102987829 to 102987963 134 + miRNA gene predicted gene, 44324
Tssr114792 12 102993509 to 102993522 13 + TSS region transcription start site region 114792
Ath21 12 102995320 to 102995424 104 QTL atherosclerosis 21
D12Mit7 12 102995320 to 102995424 104 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 7
D12Mit289 12 103011641 to 103011758 117 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 289
Gm47201 12 103027949 to 103028412 463 - pseudogene predicted gene, 47201
Tssr114793 12 103062378 to 103062379 1 + TSS region transcription start site region 114793
Gm27976 12 103128189 to 103128350 161 + unclassified non-coding RNA gene predicted gene, 27976
D12Mit166 12 103179490 to 103179630 140 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 166
Cpgi5017 12 103189818 to 103190056 238 CpG island CpG island 5017
Prima1 12 103196908 to 103242150 45242 - protein coding gene proline rich membrane anchor 1
Tssr114794 12 103232622 to 103232626 4 + TSS region transcription start site region 114794
Tssr117452 12 103236016 to 103236041 25 - TSS region transcription start site region 117452
Cpgi5018 12 103241522 to 103243053 1531 CpG island CpG island 5018
Tssr117453 12 103242143 to 103242148 5 - TSS region transcription start site region 117453