Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:101990390-102552490

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ssrq6 12 100565816 to 102495006 1929190 QTL stress response QTL 6
Cpsf2 12 101975764 to 102005993 30229 + protein coding gene cleavage and polyadenylation specific factor 2
Tssr114733 12 102005534 to 102005582 48 + TSS region transcription start site region 114733
Gm16339 12 102127806 to 102129906 2100 - antisense lncRNA gene predicted gene 16339
Cpgi5002 12 102128169 to 102128358 189 CpG island CpG island 5002
Cpgi5003 12 102128596 to 102129810 1214 CpG island CpG island 5003
Tssr114734 12 102128718 to 102128739 21 + TSS region transcription start site region 114734
Slc24a4 12 102128733 to 102267091 138358 + protein coding gene solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
Tssr114735 12 102129019 to 102129049 30 + TSS region transcription start site region 114735
D12Mit277 12 102156512 to 102156621 109 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 277
Gm25203 12 102253473 to 102253687 214 - snoRNA gene predicted gene, 25203
Tssr117394 12 102253685 to 102253687 2 - TSS region transcription start site region 117394
C030009J22Rik 12 102270390 to 102272490 2100 unclassified gene RIKEN cDNA C030009J22 gene
Tssr114736 12 102270415 to 102270417 2 + TSS region transcription start site region 114736
Cpgi5004 12 102282668 to 102283793 1125 CpG island CpG island 5004
Tssr114737 12 102282861 to 102282871 10 + TSS region transcription start site region 114737
Tssr114738 12 102283036 to 102283079 43 + TSS region transcription start site region 114738
Rin3 12 102283048 to 102390855 107807 + protein coding gene Ras and Rab interactor 3
Tssr3924 12 102283078 to 102283098 20 - TSS region transcription start site region 3924
Tssr114739 12 102283087 to 102283096 9 + TSS region transcription start site region 114739
Tssr114740 12 102283116 to 102283194 78 + TSS region transcription start site region 114740
Tssr114741 12 102283203 to 102283234 31 + TSS region transcription start site region 114741
Tssr114742 12 102283256 to 102283274 18 + TSS region transcription start site region 114742
D12Mit180 12 102298104 to 102298236 132 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 180
Tssr117395 12 102302405 to 102302415 10 - TSS region transcription start site region 117395
Tssr114743 12 102313118 to 102313148 30 + TSS region transcription start site region 114743
Tssr114744 12 102354745 to 102354754 9 + TSS region transcription start site region 114744
Tssr114745 12 102354759 to 102354821 62 + TSS region transcription start site region 114745
Tssr117396 12 102356857 to 102356871 14 - TSS region transcription start site region 117396
Tssr114746 12 102357129 to 102357152 23 + TSS region transcription start site region 114746
E030047P09Rik 12 102364469 to 102367127 2658 unclassified gene RIKEN cDNA E030047P09 gene
Tssr114747 12 102367367 to 102367390 23 + TSS region transcription start site region 114747
Tssr117397 12 102368159 to 102368162 3 - TSS region transcription start site region 117397
Tssr114748 12 102368248 to 102368258 10 + TSS region transcription start site region 114748
Tssr114749 12 102368281 to 102368321 40 + TSS region transcription start site region 114749
Tssr114750 12 102368346 to 102368372 26 + TSS region transcription start site region 114750
Tssr114751 12 102368732 to 102368761 29 + TSS region transcription start site region 114751
Tssr114752 12 102368915 to 102368936 21 + TSS region transcription start site region 114752
Tssr114753 12 102377163 to 102377164 1 + TSS region transcription start site region 114753
Tssr114754 12 102383879 to 102383939 60 + TSS region transcription start site region 114754
Cpgi5005 12 102389816 to 102390134 318 CpG island CpG island 5005
Tssr114755 12 102391349 to 102391351 2 + TSS region transcription start site region 114755
Lgmn 12 102394082 to 102439808 45726 - protein coding gene legumain
Tssr117398 12 102395676 to 102395711 35 - TSS region transcription start site region 117398
Tssr114756 12 102398218 to 102398264 46 + TSS region transcription start site region 114756
Tssr117399 12 102398319 to 102398338 19 - TSS region transcription start site region 117399
Tssr114757 12 102398323 to 102398357 34 + TSS region transcription start site region 114757
Tssr117400 12 102398381 to 102398390 9 - TSS region transcription start site region 117400
Tssr117401 12 102399940 to 102399972 32 - TSS region transcription start site region 117401
Tssr117402 12 102399978 to 102399998 20 - TSS region transcription start site region 117402
Tssr117403 12 102400168 to 102400213 45 - TSS region transcription start site region 117403
Tssr114758 12 102400176 to 102400208 32 + TSS region transcription start site region 114758
Tssr117404 12 102400216 to 102400242 26 - TSS region transcription start site region 117404
Tssr117405 12 102401560 to 102401571 11 - TSS region transcription start site region 117405
Tssr117406 12 102401593 to 102401604 11 - TSS region transcription start site region 117406
Tssr117407 12 102401621 to 102401633 12 - TSS region transcription start site region 117407
Tssr117408 12 102401645 to 102401662 17 - TSS region transcription start site region 117408
Tssr114759 12 102401874 to 102401911 37 + TSS region transcription start site region 114759
Tssr117409 12 102403474 to 102403512 38 - TSS region transcription start site region 117409
Tssr117410 12 102404281 to 102404296 15 - TSS region transcription start site region 117410
Tssr117411 12 102404319 to 102404352 33 - TSS region transcription start site region 117411
Tssr117412 12 102404706 to 102404709 3 - TSS region transcription start site region 117412
Tssr117413 12 102405482 to 102405487 5 - TSS region transcription start site region 117413
Tssr117414 12 102413552 to 102413570 18 - TSS region transcription start site region 117414
Tssr117415 12 102421330 to 102421341 11 - TSS region transcription start site region 117415
Tssr117416 12 102421398 to 102421420 22 - TSS region transcription start site region 117416
Tssr117417 12 102421441 to 102421455 14 - TSS region transcription start site region 117417
Tssr117418 12 102421515 to 102421526 11 - TSS region transcription start site region 117418
Tssr3925 12 102423679 to 102423695 16 - TSS region transcription start site region 3925
Tssr3926 12 102423725 to 102423740 15 - TSS region transcription start site region 3926
Tssr117419 12 102423741 to 102423774 33 - TSS region transcription start site region 117419
Tssr117420 12 102435850 to 102435854 4 - TSS region transcription start site region 117420
Tssr117421 12 102437182 to 102437185 3 - TSS region transcription start site region 117421
Tssr117422 12 102439090 to 102439099 9 - TSS region transcription start site region 117422
Cpgi5006 12 102439461 to 102440080 619 CpG island CpG island 5006
Tssr114760 12 102439640 to 102439641 1 + TSS region transcription start site region 114760
Tssr117423 12 102439658 to 102439737 79 - TSS region transcription start site region 117423
Tssr117424 12 102439744 to 102439758 14 - TSS region transcription start site region 117424
Tssr117425 12 102439810 to 102439821 11 - TSS region transcription start site region 117425
Tssr117426 12 102439823 to 102439836 13 - TSS region transcription start site region 117426
A930036A04Rik 12 102440722 to 102441771 1049 unclassified gene RIKEN cDNA A930036A04 gene
Cpgi5007 12 102442474 to 102442838 364 CpG island CpG island 5007
Gm30198 12 102447328 to 102467609 20281 + lincRNA gene predicted gene, 30198
Cpgi5008 12 102468865 to 102469722 857 CpG island CpG island 5008
Tssr114761 12 102469123 to 102469156 33 + TSS region transcription start site region 114761
Golga5 12 102469135 to 102497907 28772 + protein coding gene golgi autoantigen, golgin subfamily a, 5
Tssr114762 12 102469166 to 102469181 15 + TSS region transcription start site region 114762
Tssr114763 12 102469227 to 102469318 91 + TSS region transcription start site region 114763
D12Mit101 12 102494840 to 102495006 166 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 101
Tssr117427 12 102495520 to 102495546 26 - TSS region transcription start site region 117427
D12Mit292 12 102548025 to 102548176 151 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 292