Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:101069653-101961009

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ppp4r3a 12 101039409 to 101083702 44293 - protein coding gene protein phosphatase 4 regulatory subunit 3A
Tssr117351 12 101073540 to 101073544 4 - TSS region transcription start site region 117351
Cpgi4995 12 101082435 to 101084238 1803 CpG island CpG island 4995
D130020L05Rik 12 101082451 to 101088927 6476 + antisense lncRNA gene RIKEN cDNA D130020L05 gene
Tssr114723 12 101082939 to 101082973 34 + TSS region transcription start site region 114723
Tssr117352 12 101083449 to 101083487 38 - TSS region transcription start site region 117352
Tssr117353 12 101083575 to 101083611 36 - TSS region transcription start site region 117353
Tssr117354 12 101083653 to 101083717 64 - TSS region transcription start site region 117354
Tssr114724 12 101083712 to 101083743 31 + TSS region transcription start site region 114724
Tssr114725 12 101083756 to 101083802 46 + TSS region transcription start site region 114725
Tssr114726 12 101083806 to 101083832 26 + TSS region transcription start site region 114726
Gm21056 12 101103535 to 101105550 2015 - pseudogene predicted gene, 21056
Cpgi4996 12 101105216 to 101105450 234 CpG island CpG island 4996
Tssr117355 12 101115274 to 101115289 15 - TSS region transcription start site region 117355
Tssr3921 12 101145536 to 101145552 16 + TSS region transcription start site region 3921
Kif4-ps 12 101145609 to 101149273 3664 + pseudogene kinesin family member 4, pseudogene
Tssr114727 12 101169767 to 101169810 43 + TSS region transcription start site region 114727
Gm18848 12 101205723 to 101206514 791 + pseudogene predicted gene, 18848
Gm18795 12 101218176 to 101283710 65534 + pseudogene predicted gene, 18795
Mylf-ps 12 101221997 to 101222417 420 - pseudogene myosin light chain, alkali, fast skeletal muscle, pseudogene
Tssr117356 12 101222025 to 101222060 35 - TSS region transcription start site region 117356
Tssr114728 12 101222062 to 101222082 20 + TSS region transcription start site region 114728
Tssr117357 12 101222114 to 101222129 15 - TSS region transcription start site region 117357
Gm22749 12 101223592 to 101223698 106 - snRNA gene predicted gene, 22749
D12Dcr12 12 101311365 to 101311460 95 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 12
Tssr3922 12 101382876 to 101382891 15 + TSS region transcription start site region 3922
Catsperb 12 101404653 to 101626009 221356 + protein coding gene cation channel sperm associated auxiliary subunit beta
Gm24542 12 101554079 to 101554188 109 + miRNA gene predicted gene, 24542
Tc2n 12 101645443 to 101718523 73080 - protein coding gene tandem C2 domains, nuclear
Gm16285 12 101646186 to 101646532 346 + pseudogene predicted gene 16285
Tssr117358 12 101646274 to 101646279 5 - TSS region transcription start site region 117358
Cpgi4997 12 101717934 to 101718973 1039 CpG island CpG island 4997
Tssr117359 12 101718407 to 101718423 16 - TSS region transcription start site region 117359
Tssr117360 12 101718513 to 101718530 17 - TSS region transcription start site region 117360
Fbln5 12 101746565 to 101819055 72490 - protein coding gene fibulin 5
Tssr117361 12 101809853 to 101809865 12 - TSS region transcription start site region 117361
Tssr117362 12 101809894 to 101809907 13 - TSS region transcription start site region 117362
Tssr117363 12 101818477 to 101818488 11 - TSS region transcription start site region 117363
Tssr117364 12 101818515 to 101818540 25 - TSS region transcription start site region 117364
Cpgi4998 12 101818703 to 101819413 710 CpG island CpG island 4998
Tssr117365 12 101818801 to 101818812 11 - TSS region transcription start site region 117365
Tssr117366 12 101818855 to 101818866 11 - TSS region transcription start site region 117366
Tssr117367 12 101818874 to 101818896 22 - TSS region transcription start site region 117367
Tssr117368 12 101818905 to 101818920 15 - TSS region transcription start site region 117368
Tssr117369 12 101818943 to 101818952 9 - TSS region transcription start site region 117369
Tssr117370 12 101818954 to 101818963 9 - TSS region transcription start site region 117370
Tssr117371 12 101818996 to 101819007 11 - TSS region transcription start site region 117371
Tssr117372 12 101819023 to 101819034 11 - TSS region transcription start site region 117372
Tssr117373 12 101819048 to 101819061 13 - TSS region transcription start site region 117373
Tssr117374 12 101819064 to 101819078 14 - TSS region transcription start site region 117374
Tssr117375 12 101819081 to 101819106 25 - TSS region transcription start site region 117375
Tssr117376 12 101819108 to 101819113 5 - TSS region transcription start site region 117376
Trip11 12 101834043 to 101913171 79128 - protein coding gene thyroid hormone receptor interactor 11
Tssr117377 12 101837520 to 101837537 17 - TSS region transcription start site region 117377
Gm20701 12 101866949 to 101867295 346 + pseudogene predicted gene 20701
Tssr117378 12 101880538 to 101880550 12 - TSS region transcription start site region 117378
Tssr117379 12 101886940 to 101886955 15 - TSS region transcription start site region 117379
Gm20702 12 101906080 to 101906539 459 + pseudogene predicted gene 20702
Cpgi4999 12 101912414 to 101913495 1081 CpG island CpG island 4999
Tssr117380 12 101913116 to 101913161 45 - TSS region transcription start site region 117380
Gm20036 12 101913240 to 101915335 2095 + unclassified non-coding RNA gene predicted gene, 20036
Atxn3 12 101918901 to 101958243 39342 - protein coding gene ataxin 3
Cpgi5000 12 101957762 to 101958468 706 CpG island CpG island 5000
Tssr117381 12 101958161 to 101958212 51 - TSS region transcription start site region 117381