Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:100908712-101258743

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm45956 12 100904107 to 100910909 6802 + lncRNA gene predicted gene, 45956
Ccdc88c 12 100911519 to 101028983 117464 - protein coding gene coiled-coil domain containing 88C
Tssr117341 12 100923590 to 100923595 5 - TSS region transcription start site region 117341
A630072L19Rik 12 100939129 to 100944220 5091 + antisense lncRNA gene RIKEN cDNA A630072L19 gene
Cpgi4993 12 100944867 to 100945075 208 CpG island CpG island 4993
Tssr117342 12 100978089 to 100978129 40 - TSS region transcription start site region 117342
Gm36756 12 100986623 to 101014822 28199 + antisense lncRNA gene predicted gene, 36756
Tssr114720 12 100986627 to 100986632 5 + TSS region transcription start site region 114720
Tssr114721 12 100992970 to 100992973 3 + TSS region transcription start site region 114721
Tssr114722 12 101007658 to 101007673 15 + TSS region transcription start site region 114722
Tssr117343 12 101016122 to 101016148 26 - TSS region transcription start site region 117343
Mir1190 12 101021673 to 101021768 95 - miRNA gene microRNA 1190
Cpgi4994 12 101028255 to 101029656 1401 CpG island CpG island 4994
Tssr117344 12 101028844 to 101028913 69 - TSS region transcription start site region 117344
Tssr117345 12 101029016 to 101029042 26 - TSS region transcription start site region 117345
Tssr117346 12 101029059 to 101029087 28 - TSS region transcription start site region 117346
Gm47639 12 101039092 to 101042808 3716 + antisense lncRNA gene predicted gene, 47639
Ppp4r3a 12 101039409 to 101083702 44293 - protein coding gene protein phosphatase 4 regulatory subunit 3A
Tssr117347 12 101040070 to 101040090 20 - TSS region transcription start site region 117347
Tssr117348 12 101040129 to 101040133 4 - TSS region transcription start site region 117348
Tssr117349 12 101058728 to 101058739 11 - TSS region transcription start site region 117349
Tssr117350 12 101066410 to 101066414 4 - TSS region transcription start site region 117350
Tssr117351 12 101073540 to 101073544 4 - TSS region transcription start site region 117351
Cpgi4995 12 101082435 to 101084238 1803 CpG island CpG island 4995
D130020L05Rik 12 101082451 to 101088927 6476 + antisense lncRNA gene RIKEN cDNA D130020L05 gene
Tssr114723 12 101082939 to 101082973 34 + TSS region transcription start site region 114723
Tssr117352 12 101083449 to 101083487 38 - TSS region transcription start site region 117352
Tssr117353 12 101083575 to 101083611 36 - TSS region transcription start site region 117353
Tssr117354 12 101083653 to 101083717 64 - TSS region transcription start site region 117354
Tssr114724 12 101083712 to 101083743 31 + TSS region transcription start site region 114724
Tssr114725 12 101083756 to 101083802 46 + TSS region transcription start site region 114725
Tssr114726 12 101083806 to 101083832 26 + TSS region transcription start site region 114726
Gm21056 12 101103535 to 101105550 2015 - pseudogene predicted gene, 21056
Cpgi4996 12 101105216 to 101105450 234 CpG island CpG island 4996
Tssr117355 12 101115274 to 101115289 15 - TSS region transcription start site region 117355
Tssr3921 12 101145536 to 101145552 16 + TSS region transcription start site region 3921
Kif4-ps 12 101145609 to 101149273 3664 + pseudogene kinesin family member 4, pseudogene
Tssr114727 12 101169767 to 101169810 43 + TSS region transcription start site region 114727
Gm18848 12 101205723 to 101206514 791 + pseudogene predicted gene, 18848
Gm18795 12 101218176 to 101283710 65534 + pseudogene predicted gene, 18795
Mylf-ps 12 101221997 to 101222417 420 - pseudogene myosin light chain, alkali, fast skeletal muscle, pseudogene
Tssr117356 12 101222025 to 101222060 35 - TSS region transcription start site region 117356
Tssr114728 12 101222062 to 101222082 20 + TSS region transcription start site region 114728
Tssr117357 12 101222114 to 101222129 15 - TSS region transcription start site region 117357
Gm22749 12 101223592 to 101223698 106 - snRNA gene predicted gene, 22749