Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:100604706-104204709

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553 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rps6ka5 12 100549778 to 100725395 175617 - protein coding gene ribosomal protein S6 kinase, polypeptide 5
Ssrq6 12 100565816 to 102495006 1929190 QTL stress response QTL 6
Gm48586 12 100621676 to 100623733 2057 - unclassified gene predicted gene, 48586
Gm48585 12 100624785 to 100626793 2008 - unclassified gene predicted gene, 48585
Tssr117325 12 100636581 to 100636584 3 - TSS region transcription start site region 117325
Cpgi4990 12 100724306 to 100725674 1368 CpG island CpG island 4990
Tssr117326 12 100724993 to 100725002 9 - TSS region transcription start site region 117326
Tssr117327 12 100725058 to 100725081 23 - TSS region transcription start site region 117327
Tssr114711 12 100729386 to 100729392 6 + TSS region transcription start site region 114711
Gm2614 12 100744533 to 100744935 402 - pseudogene predicted gene 2614
Tssr117328 12 100744963 to 100744965 2 - TSS region transcription start site region 117328
Gm40558 12 100763409 to 100777745 14336 + lncRNA gene predicted gene, 40558
Gm25801 12 100769023 to 100769128 105 - snRNA gene predicted gene, 25801
Tssr114712 12 100779055 to 100779065 10 + TSS region transcription start site region 114712
Dglucy 12 100779071 to 100872610 93539 + protein coding gene D-glutamate cyclase
Tssr114713 12 100779074 to 100779085 11 + TSS region transcription start site region 114713
Tssr114714 12 100779088 to 100779101 13 + TSS region transcription start site region 114714
Tssr114715 12 100779105 to 100779137 32 + TSS region transcription start site region 114715
Tssr114716 12 100779140 to 100779156 16 + TSS region transcription start site region 114716
Tssr117329 12 100837414 to 100837433 19 - TSS region transcription start site region 117329
Tssr114717 12 100856074 to 100856082 8 + TSS region transcription start site region 114717
Gm48771 12 100862786 to 100864689 1903 + unclassified gene predicted gene, 48771
Gm8482 12 100863969 to 100864439 470 - pseudogene predicted pseudogene 8482
Gpr68 12 100876682 to 100908198 31516 - protein coding gene G protein-coupled receptor 68
Tssr114718 12 100885872 to 100885881 9 + TSS region transcription start site region 114718
Tssr117330 12 100887836 to 100887864 28 - TSS region transcription start site region 117330
Tssr117331 12 100887870 to 100887887 17 - TSS region transcription start site region 117331
Tssr117332 12 100887890 to 100887901 11 - TSS region transcription start site region 117332
Tssr117333 12 100887925 to 100887936 11 - TSS region transcription start site region 117333
Tssr117334 12 100887951 to 100887958 7 - TSS region transcription start site region 117334
Tssr117335 12 100888026 to 100888037 11 - TSS region transcription start site region 117335
Tssr117336 12 100888073 to 100888081 8 - TSS region transcription start site region 117336
Gm36572 12 100890427 to 100899250 8823 + lncRNA gene predicted gene, 36572
Tssr114719 12 100898464 to 100898500 36 + TSS region transcription start site region 114719
Cpgi4991 12 100898877 to 100899701 824 CpG island CpG island 4991
Tssr117337 12 100899359 to 100899385 26 - TSS region transcription start site region 117337
Tssr117338 12 100899436 to 100899448 12 - TSS region transcription start site region 117338
Tssr117339 12 100899544 to 100899581 37 - TSS region transcription start site region 117339
Gm45956 12 100904107 to 100910909 6802 + lncRNA gene predicted gene, 45956
Cpgi4992 12 100907670 to 100908316 646 CpG island CpG island 4992
Tssr117340 12 100908190 to 100908220 30 - TSS region transcription start site region 117340
Ccdc88c 12 100911519 to 101028983 117464 - protein coding gene coiled-coil domain containing 88C
Tssr117341 12 100923590 to 100923595 5 - TSS region transcription start site region 117341
A630072L19Rik 12 100939129 to 100944220 5091 + antisense lncRNA gene RIKEN cDNA A630072L19 gene
Cpgi4993 12 100944867 to 100945075 208 CpG island CpG island 4993
Tssr117342 12 100978089 to 100978129 40 - TSS region transcription start site region 117342
Gm36756 12 100986623 to 101014822 28199 + antisense lncRNA gene predicted gene, 36756
Tssr114720 12 100986627 to 100986632 5 + TSS region transcription start site region 114720
Tssr114721 12 100992970 to 100992973 3 + TSS region transcription start site region 114721
Tssr114722 12 101007658 to 101007673 15 + TSS region transcription start site region 114722
Tssr117343 12 101016122 to 101016148 26 - TSS region transcription start site region 117343
Mir1190 12 101021673 to 101021768 95 - miRNA gene microRNA 1190
Cpgi4994 12 101028255 to 101029656 1401 CpG island CpG island 4994
Tssr117344 12 101028844 to 101028913 69 - TSS region transcription start site region 117344
Tssr117345 12 101029016 to 101029042 26 - TSS region transcription start site region 117345
Tssr117346 12 101029059 to 101029087 28 - TSS region transcription start site region 117346
Gm47639 12 101039092 to 101042808 3716 + antisense lncRNA gene predicted gene, 47639
Ppp4r3a 12 101039409 to 101083702 44293 - protein coding gene protein phosphatase 4 regulatory subunit 3A
Tssr117347 12 101040070 to 101040090 20 - TSS region transcription start site region 117347
Tssr117348 12 101040129 to 101040133 4 - TSS region transcription start site region 117348
Tssr117349 12 101058728 to 101058739 11 - TSS region transcription start site region 117349
Tssr117350 12 101066410 to 101066414 4 - TSS region transcription start site region 117350
Tssr117351 12 101073540 to 101073544 4 - TSS region transcription start site region 117351
Cpgi4995 12 101082435 to 101084238 1803 CpG island CpG island 4995
D130020L05Rik 12 101082451 to 101088927 6476 + antisense lncRNA gene RIKEN cDNA D130020L05 gene
Tssr114723 12 101082939 to 101082973 34 + TSS region transcription start site region 114723
Tssr117352 12 101083449 to 101083487 38 - TSS region transcription start site region 117352
Tssr117353 12 101083575 to 101083611 36 - TSS region transcription start site region 117353
Tssr117354 12 101083653 to 101083717 64 - TSS region transcription start site region 117354
Tssr114724 12 101083712 to 101083743 31 + TSS region transcription start site region 114724
Tssr114725 12 101083756 to 101083802 46 + TSS region transcription start site region 114725
Tssr114726 12 101083806 to 101083832 26 + TSS region transcription start site region 114726
Gm21056 12 101103535 to 101105550 2015 - pseudogene predicted gene, 21056
Cpgi4996 12 101105216 to 101105450 234 CpG island CpG island 4996
Tssr117355 12 101115274 to 101115289 15 - TSS region transcription start site region 117355
Tssr3921 12 101145536 to 101145552 16 + TSS region transcription start site region 3921
Kif4-ps 12 101145609 to 101149273 3664 + pseudogene kinesin family member 4, pseudogene
Tssr114727 12 101169767 to 101169810 43 + TSS region transcription start site region 114727
Gm18848 12 101205723 to 101206514 791 + pseudogene predicted gene, 18848
Gm18795 12 101218176 to 101283710 65534 + pseudogene predicted gene, 18795
Mylf-ps 12 101221997 to 101222417 420 - pseudogene myosin light chain, alkali, fast skeletal muscle, pseudogene
Tssr117356 12 101222025 to 101222060 35 - TSS region transcription start site region 117356
Tssr114728 12 101222062 to 101222082 20 + TSS region transcription start site region 114728
Tssr117357 12 101222114 to 101222129 15 - TSS region transcription start site region 117357
Gm22749 12 101223592 to 101223698 106 - snRNA gene predicted gene, 22749
D12Dcr12 12 101311365 to 101311460 95 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 12
Tssr3922 12 101382876 to 101382891 15 + TSS region transcription start site region 3922
Catsperb 12 101404653 to 101626009 221356 + protein coding gene cation channel sperm associated auxiliary subunit beta
Gm24542 12 101554079 to 101554188 109 + miRNA gene predicted gene, 24542
Tc2n 12 101645443 to 101718523 73080 - protein coding gene tandem C2 domains, nuclear
Gm16285 12 101646186 to 101646532 346 + pseudogene predicted gene 16285
Tssr117358 12 101646274 to 101646279 5 - TSS region transcription start site region 117358
Cpgi4997 12 101717934 to 101718973 1039 CpG island CpG island 4997
Tssr117359 12 101718407 to 101718423 16 - TSS region transcription start site region 117359
Tssr117360 12 101718513 to 101718530 17 - TSS region transcription start site region 117360
Fbln5 12 101746565 to 101819055 72490 - protein coding gene fibulin 5
Tssr117361 12 101809853 to 101809865 12 - TSS region transcription start site region 117361
Tssr117362 12 101809894 to 101809907 13 - TSS region transcription start site region 117362
Tssr117363 12 101818477 to 101818488 11 - TSS region transcription start site region 117363
Tssr117364 12 101818515 to 101818540 25 - TSS region transcription start site region 117364
Cpgi4998 12 101818703 to 101819413 710 CpG island CpG island 4998
Tssr117365 12 101818801 to 101818812 11 - TSS region transcription start site region 117365
Tssr117366 12 101818855 to 101818866 11 - TSS region transcription start site region 117366
Tssr117367 12 101818874 to 101818896 22 - TSS region transcription start site region 117367
Tssr117368 12 101818905 to 101818920 15 - TSS region transcription start site region 117368
Tssr117369 12 101818943 to 101818952 9 - TSS region transcription start site region 117369
Tssr117370 12 101818954 to 101818963 9 - TSS region transcription start site region 117370
Tssr117371 12 101818996 to 101819007 11 - TSS region transcription start site region 117371
Tssr117372 12 101819023 to 101819034 11 - TSS region transcription start site region 117372
Tssr117373 12 101819048 to 101819061 13 - TSS region transcription start site region 117373
Tssr117374 12 101819064 to 101819078 14 - TSS region transcription start site region 117374
Tssr117375 12 101819081 to 101819106 25 - TSS region transcription start site region 117375
Tssr117376 12 101819108 to 101819113 5 - TSS region transcription start site region 117376
Trip11 12 101834043 to 101913171 79128 - protein coding gene thyroid hormone receptor interactor 11
Tssr117377 12 101837520 to 101837537 17 - TSS region transcription start site region 117377
Gm20701 12 101866949 to 101867295 346 + pseudogene predicted gene 20701
Tssr117378 12 101880538 to 101880550 12 - TSS region transcription start site region 117378
Tssr117379 12 101886940 to 101886955 15 - TSS region transcription start site region 117379
Gm20702 12 101906080 to 101906539 459 + pseudogene predicted gene 20702
Cpgi4999 12 101912414 to 101913495 1081 CpG island CpG island 4999
Tssr117380 12 101913116 to 101913161 45 - TSS region transcription start site region 117380
Gm20036 12 101913240 to 101915335 2095 + unclassified non-coding RNA gene predicted gene, 20036
Atxn3 12 101918901 to 101958243 39342 - protein coding gene ataxin 3
Cpgi5000 12 101957762 to 101958468 706 CpG island CpG island 5000
Tssr117381 12 101958161 to 101958212 51 - TSS region transcription start site region 117381
Ndufb1-ps 12 101968099 to 101977063 8964 - bidirectional promoter lncRNA gene NADH:ubiquinone oxidoreductase subunit B1
Tssr117382 12 101971850 to 101971863 13 - TSS region transcription start site region 117382
Cpgi5001 12 101975339 to 101976523 1184 CpG island CpG island 5001
Tssr114729 12 101975366 to 101975371 5 + TSS region transcription start site region 114729
Tssr117383 12 101975683 to 101975746 63 - TSS region transcription start site region 117383
Tssr114730 12 101975725 to 101975751 26 + TSS region transcription start site region 114730
Cpsf2 12 101975764 to 102005993 30229 + protein coding gene cleavage and polyadenylation specific factor 2
Tssr117384 12 101975765 to 101975776 11 - TSS region transcription start site region 117384
Tssr3923 12 101975883 to 101975886 3 - TSS region transcription start site region 3923
Tssr117385 12 101975913 to 101975924 11 - TSS region transcription start site region 117385
Tssr117386 12 101975935 to 101975946 11 - TSS region transcription start site region 117386
Tssr114731 12 101975965 to 101976004 39 + TSS region transcription start site region 114731
Tssr117387 12 101975979 to 101975984 5 - TSS region transcription start site region 117387
Tssr114732 12 101976006 to 101976017 11 + TSS region transcription start site region 114732
Tssr117388 12 101976023 to 101976035 12 - TSS region transcription start site region 117388
Tssr117389 12 101976204 to 101976248 44 - TSS region transcription start site region 117389
Tssr117390 12 101976265 to 101976279 14 - TSS region transcription start site region 117390
Tssr117391 12 101976282 to 101976301 19 - TSS region transcription start site region 117391
Tssr117392 12 101976877 to 101976887 10 - TSS region transcription start site region 117392
Tssr117393 12 101976897 to 101976914 17 - TSS region transcription start site region 117393
Tssr114733 12 102005534 to 102005582 48 + TSS region transcription start site region 114733
Gm16339 12 102127806 to 102129906 2100 - antisense lncRNA gene predicted gene 16339
Cpgi5002 12 102128169 to 102128358 189 CpG island CpG island 5002
Cpgi5003 12 102128596 to 102129810 1214 CpG island CpG island 5003
Tssr114734 12 102128718 to 102128739 21 + TSS region transcription start site region 114734
Slc24a4 12 102128733 to 102267091 138358 + protein coding gene solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
Tssr114735 12 102129019 to 102129049 30 + TSS region transcription start site region 114735
D12Mit277 12 102156512 to 102156621 109 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 277
Gm25203 12 102253473 to 102253687 214 - snoRNA gene predicted gene, 25203
Tssr117394 12 102253685 to 102253687 2 - TSS region transcription start site region 117394
C030009J22Rik 12 102270390 to 102272490 2100 unclassified gene RIKEN cDNA C030009J22 gene
Tssr114736 12 102270415 to 102270417 2 + TSS region transcription start site region 114736
Cpgi5004 12 102282668 to 102283793 1125 CpG island CpG island 5004
Tssr114737 12 102282861 to 102282871 10 + TSS region transcription start site region 114737
Tssr114738 12 102283036 to 102283079 43 + TSS region transcription start site region 114738
Rin3 12 102283048 to 102390855 107807 + protein coding gene Ras and Rab interactor 3
Tssr3924 12 102283078 to 102283098 20 - TSS region transcription start site region 3924
Tssr114739 12 102283087 to 102283096 9 + TSS region transcription start site region 114739
Tssr114740 12 102283116 to 102283194 78 + TSS region transcription start site region 114740
Tssr114741 12 102283203 to 102283234 31 + TSS region transcription start site region 114741
Tssr114742 12 102283256 to 102283274 18 + TSS region transcription start site region 114742
D12Mit180 12 102298104 to 102298236 132 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 180
Tssr117395 12 102302405 to 102302415 10 - TSS region transcription start site region 117395
Tssr114743 12 102313118 to 102313148 30 + TSS region transcription start site region 114743
Tssr114744 12 102354745 to 102354754 9 + TSS region transcription start site region 114744
Tssr114745 12 102354759 to 102354821 62 + TSS region transcription start site region 114745
Tssr117396 12 102356857 to 102356871 14 - TSS region transcription start site region 117396
Tssr114746 12 102357129 to 102357152 23 + TSS region transcription start site region 114746
E030047P09Rik 12 102364469 to 102367127 2658 unclassified gene RIKEN cDNA E030047P09 gene
Tssr114747 12 102367367 to 102367390 23 + TSS region transcription start site region 114747
Tssr117397 12 102368159 to 102368162 3 - TSS region transcription start site region 117397
Tssr114748 12 102368248 to 102368258 10 + TSS region transcription start site region 114748
Tssr114749 12 102368281 to 102368321 40 + TSS region transcription start site region 114749
Tssr114750 12 102368346 to 102368372 26 + TSS region transcription start site region 114750
Tssr114751 12 102368732 to 102368761 29 + TSS region transcription start site region 114751
Tssr114752 12 102368915 to 102368936 21 + TSS region transcription start site region 114752
Tssr114753 12 102377163 to 102377164 1 + TSS region transcription start site region 114753
Tssr114754 12 102383879 to 102383939 60 + TSS region transcription start site region 114754
Cpgi5005 12 102389816 to 102390134 318 CpG island CpG island 5005
Tssr114755 12 102391349 to 102391351 2 + TSS region transcription start site region 114755
Lgmn 12 102394082 to 102439808 45726 - protein coding gene legumain
Tssr117398 12 102395676 to 102395711 35 - TSS region transcription start site region 117398
Tssr114756 12 102398218 to 102398264 46 + TSS region transcription start site region 114756
Tssr117399 12 102398319 to 102398338 19 - TSS region transcription start site region 117399
Tssr114757 12 102398323 to 102398357 34 + TSS region transcription start site region 114757
Tssr117400 12 102398381 to 102398390 9 - TSS region transcription start site region 117400
Tssr117401 12 102399940 to 102399972 32 - TSS region transcription start site region 117401
Tssr117402 12 102399978 to 102399998 20 - TSS region transcription start site region 117402
Tssr117403 12 102400168 to 102400213 45 - TSS region transcription start site region 117403
Tssr114758 12 102400176 to 102400208 32 + TSS region transcription start site region 114758
Tssr117404 12 102400216 to 102400242 26 - TSS region transcription start site region 117404
Tssr117405 12 102401560 to 102401571 11 - TSS region transcription start site region 117405
Tssr117406 12 102401593 to 102401604 11 - TSS region transcription start site region 117406
Tssr117407 12 102401621 to 102401633 12 - TSS region transcription start site region 117407
Tssr117408 12 102401645 to 102401662 17 - TSS region transcription start site region 117408