Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:100199859-100939860

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi4987 12 100199001 to 100201096 2095 CpG island CpG island 4987
Calm1 12 100199435 to 100209814 10379 + protein coding gene calmodulin 1
Tssr114698 12 100203608 to 100203622 14 + TSS region transcription start site region 114698
Tssr114699 12 100203633 to 100203673 40 + TSS region transcription start site region 114699
Tssr117318 12 100203693 to 100203724 31 - TSS region transcription start site region 117318
Tssr114700 12 100205608 to 100205661 53 + TSS region transcription start site region 114700
Tssr117319 12 100205661 to 100205701 40 - TSS region transcription start site region 117319
Tssr114701 12 100206092 to 100206109 17 + TSS region transcription start site region 114701
Tssr114702 12 100206114 to 100206139 25 + TSS region transcription start site region 114702
Tssr114703 12 100206148 to 100206165 17 + TSS region transcription start site region 114703
Tssr117320 12 100206157 to 100206231 74 - TSS region transcription start site region 117320
Tssr114704 12 100206425 to 100206459 34 + TSS region transcription start site region 114704
Tssr117321 12 100206486 to 100206501 15 - TSS region transcription start site region 117321
Tssr114705 12 100206539 to 100206578 39 + TSS region transcription start site region 114705
Tssr114706 12 100206601 to 100206636 35 + TSS region transcription start site region 114706
Tssr114707 12 100206711 to 100206766 55 + TSS region transcription start site region 114707
Tssr114708 12 100207372 to 100207388 16 + TSS region transcription start site region 114708
Tssr114709 12 100207569 to 100207586 17 + TSS region transcription start site region 114709
Tssr114710 12 100208224 to 100208239 15 + TSS region transcription start site region 114710
Gm26723 12 100208988 to 100209814 826 - lincRNA gene predicted gene, 26723
Gm40557 12 100238009 to 100242260 4251 - lincRNA gene predicted gene, 40557
Tssr117322 12 100239527 to 100239564 37 - TSS region transcription start site region 117322
Gm10432 12 100276609 to 100300908 24299 + lncRNA gene predicted gene 10432
Ttc7b 12 100300770 to 100520822 220052 - protein coding gene tetratricopeptide repeat domain 7B
Gm48382 12 100366078 to 100369752 3674 - unclassified gene predicted gene, 48382
Gm48381 12 100440697 to 100444660 3963 - unclassified gene predicted gene, 48381
Tssr117323 12 100447290 to 100447291 1 - TSS region transcription start site region 117323
Gm48383 12 100465039 to 100488390 23351 + antisense lncRNA gene predicted gene, 48383
Gm36375 12 100487660 to 100493910 6250 - protein coding gene predicted gene, 36375
Cpgi4988 12 100499547 to 100499763 216 CpG island CpG island 4988
D12Mit98 12 100500769 to 100500902 133 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 98
Cpgi4989 12 100519902 to 100521353 1451 CpG island CpG island 4989
Tssr117324 12 100520778 to 100520853 75 - TSS region transcription start site region 117324
Rps6ka5 12 100549778 to 100725395 175617 - protein coding gene ribosomal protein S6 kinase, polypeptide 5
Insq10 12 100565816 to 100565965 149 QTL insulin QTL 10
Dbsty3 12 100565816 to 100565965 149 QTL diabesity 3
D12Mit231 12 100565816 to 100565965 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 231
Ssrq6 12 100565816 to 102495006 1929190 QTL stress response QTL 6
Tssr3920 12 100569859 to 100569860 1 + TSS region transcription start site region 3920
Gm49703 12 100571908 to 100573976 2068 - unclassified gene predicted gene, 49703
Gm48586 12 100621676 to 100623733 2057 - unclassified gene predicted gene, 48586
Gm48585 12 100624785 to 100626793 2008 - unclassified gene predicted gene, 48585
Tssr117325 12 100636581 to 100636584 3 - TSS region transcription start site region 117325
Cpgi4990 12 100724306 to 100725674 1368 CpG island CpG island 4990
Tssr117326 12 100724993 to 100725002 9 - TSS region transcription start site region 117326
Tssr117327 12 100725058 to 100725081 23 - TSS region transcription start site region 117327
Tssr114711 12 100729386 to 100729392 6 + TSS region transcription start site region 114711
Gm2614 12 100744533 to 100744935 402 - pseudogene predicted gene 2614
Tssr117328 12 100744963 to 100744965 2 - TSS region transcription start site region 117328
Gm40558 12 100763409 to 100777745 14336 + lncRNA gene predicted gene, 40558
Gm25801 12 100769023 to 100769128 105 - snRNA gene predicted gene, 25801
Tssr114712 12 100779055 to 100779065 10 + TSS region transcription start site region 114712
Dglucy 12 100779071 to 100872610 93539 + protein coding gene D-glutamate cyclase
Tssr114713 12 100779074 to 100779085 11 + TSS region transcription start site region 114713
Tssr114714 12 100779088 to 100779101 13 + TSS region transcription start site region 114714
Tssr114715 12 100779105 to 100779137 32 + TSS region transcription start site region 114715
Tssr114716 12 100779140 to 100779156 16 + TSS region transcription start site region 114716
Tssr117329 12 100837414 to 100837433 19 - TSS region transcription start site region 117329
Tssr114717 12 100856074 to 100856082 8 + TSS region transcription start site region 114717
Gm48771 12 100862786 to 100864689 1903 + unclassified gene predicted gene, 48771
Gm8482 12 100863969 to 100864439 470 - pseudogene predicted pseudogene 8482
Gpr68 12 100876682 to 100908198 31516 - protein coding gene G protein-coupled receptor 68
Tssr114718 12 100885872 to 100885881 9 + TSS region transcription start site region 114718
Tssr117330 12 100887836 to 100887864 28 - TSS region transcription start site region 117330
Tssr117331 12 100887870 to 100887887 17 - TSS region transcription start site region 117331
Tssr117332 12 100887890 to 100887901 11 - TSS region transcription start site region 117332
Tssr117333 12 100887925 to 100887936 11 - TSS region transcription start site region 117333
Tssr117334 12 100887951 to 100887958 7 - TSS region transcription start site region 117334
Tssr117335 12 100888026 to 100888037 11 - TSS region transcription start site region 117335
Tssr117336 12 100888073 to 100888081 8 - TSS region transcription start site region 117336
Gm36572 12 100890427 to 100899250 8823 + lncRNA gene predicted gene, 36572
Tssr114719 12 100898464 to 100898500 36 + TSS region transcription start site region 114719
Cpgi4991 12 100898877 to 100899701 824 CpG island CpG island 4991
Tssr117337 12 100899359 to 100899385 26 - TSS region transcription start site region 117337
Tssr117338 12 100899436 to 100899448 12 - TSS region transcription start site region 117338
Tssr117339 12 100899544 to 100899581 37 - TSS region transcription start site region 117339
Gm45956 12 100904107 to 100910909 6802 + lncRNA gene predicted gene, 45956
Cpgi4992 12 100907670 to 100908316 646 CpG island CpG island 4992
Tssr117340 12 100908190 to 100908220 30 - TSS region transcription start site region 117340
Ccdc88c 12 100911519 to 101028983 117464 - protein coding gene coiled-coil domain containing 88C
Tssr117341 12 100923590 to 100923595 5 - TSS region transcription start site region 117341
A630072L19Rik 12 100939129 to 100944220 5091 + antisense lncRNA gene RIKEN cDNA A630072L19 gene