Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:99889883-100169887

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109 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm11566 11 99897573 to 99897775 202 + pseudogene predicted gene 11566
Tssr104888 11 99907918 to 99907922 4 + TSS region transcription start site region 104888
Krtap31-1 11 99907920 to 99908890 970 + protein coding gene keratin associated protein 31-1
Tssr104889 11 99914729 to 99914733 4 + TSS region transcription start site region 104889
Gm11565 11 99914751 to 99915671 920 + protein coding gene predicted gene 11565
Tssr104890 11 99932020 to 99932029 9 + TSS region transcription start site region 104890
Cpgi3801 11 99932101 to 99932330 229 CpG island CpG island 3801
Gm11560 11 99932162 to 99933098 936 + pseudogene predicted gene 11560
Tssr104891 11 99932945 to 99932954 9 + TSS region transcription start site region 104891
Tssr104892 11 99936289 to 99936293 4 + TSS region transcription start site region 104892
Krtap31-2 11 99936291 to 99937225 934 + protein coding gene keratin associated protein 31-2
Tssr104893 11 99948420 to 99948429 9 + TSS region transcription start site region 104893
Krtap9-5 11 99948475 to 99949551 1076 + protein coding gene keratin associated protein 9-5
Gm11561 11 99955607 to 99956023 416 + pseudogene predicted gene 11561
Gm11553 11 99961079 to 99961318 239 + pseudogene predicted gene 11553
Krtap29-1 11 99978025 to 99979053 1028 - protein coding gene keratin associated protein 29-1
Tssr110719 11 99979097 to 99979103 6 - TSS region transcription start site region 110719
Krtap16-1 11 99984710 to 99986597 1887 - protein coding gene keratin associated protein 16-1
Cpgi3802 11 99985176 to 99985531 355 CpG island CpG island 3802
Tssr110720 11 99986606 to 99986608 2 - TSS region transcription start site region 110720
Gm11558 11 99988134 to 99988592 458 - pseudogene predicted gene 11558
Krtap17-1 11 99993234 to 99993994 760 - protein coding gene keratin associated protein 17-1
Cpgi3803 11 99993541 to 99993939 398 CpG island CpG island 3803
Tssr110721 11 99993992 to 99993997 5 - TSS region transcription start site region 110721
33.MMHAP16FRC12.seq 11 99999751 to 99999915 164 DNA segment DNA segment, 33.MMHAP16FRC12.seq
Krt33a 11 100011199 to 100016212 5013 - protein coding gene keratin 33A
Tssr110722 11 100016204 to 100016216 12 - TSS region transcription start site region 110722
Krt33b 11 100023634 to 100029868 6234 - protein coding gene keratin 33B
Tssr110723 11 100029883 to 100029887 4 - TSS region transcription start site region 110723
Krt34 11 100037347 to 100041554 4207 - protein coding gene keratin 34
Tssr110724 11 100041547 to 100041561 14 - TSS region transcription start site region 110724
Tssr110725 11 100046542 to 100046549 7 - TSS region transcription start site region 110725
Krt31 11 100046646 to 100050551 3905 - protein coding gene keratin 31
Tssr110726 11 100050542 to 100050557 15 - TSS region transcription start site region 110726
D11Mit123.3 11 100050659 to 100050887 228 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 123.3
D11Mit123 11 100050723 to 100051036 313 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 123
D11Dcr21 11 100050877 to 100051021 144 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 21
Tssr104894 11 100052104 to 100052115 11 + TSS region transcription start site region 104894
Tssr104895 11 100052260 to 100052265 5 + TSS region transcription start site region 104895
Tssr104896 11 100052281 to 100052292 11 + TSS region transcription start site region 104896
Gm11571 11 100052286 to 100085983 33697 + antisense lncRNA gene predicted gene 11571
Krt32 11 100080848 to 100088226 7378 - protein coding gene keratin 32
Tssr110727 11 100085443 to 100085448 5 - TSS region transcription start site region 110727
Tssr110728 11 100088265 to 100088270 5 - TSS region transcription start site region 110728
Krt35 11 100092192 to 100096224 4032 - protein coding gene keratin 35
Tssr110729 11 100096237 to 100096242 5 - TSS region transcription start site region 110729
Tssr110730 11 100096273 to 100096279 6 - TSS region transcription start site region 110730
Krt36 11 100102007 to 100105626 3619 - protein coding gene keratin 36
Tssr110731 11 100105638 to 100105645 7 - TSS region transcription start site region 110731
Gm12347 11 100105771 to 100112106 6335 - lincRNA gene predicted gene 12347
Tssr110732 11 100112012 to 100112052 40 - TSS region transcription start site region 110732
Tssr110733 11 100112154 to 100112162 8 - TSS region transcription start site region 110733
Krt13 11 100117327 to 100121566 4239 - protein coding gene keratin 13
Tssr110734 11 100117402 to 100117428 26 - TSS region transcription start site region 110734
Tssr110735 11 100117440 to 100117454 14 - TSS region transcription start site region 110735
Tssr110736 11 100117631 to 100117646 15 - TSS region transcription start site region 110736
Tssr110737 11 100118833 to 100118843 10 - TSS region transcription start site region 110737
Tssr104897 11 100119074 to 100119084 10 + TSS region transcription start site region 104897
Tssr104898 11 100119086 to 100119097 11 + TSS region transcription start site region 104898
Tssr104899 11 100119405 to 100119416 11 + TSS region transcription start site region 104899
Tssr110738 11 100119699 to 100119719 20 - TSS region transcription start site region 110738
Tssr110739 11 100120430 to 100120440 10 - TSS region transcription start site region 110739
Tssr110740 11 100121558 to 100121572 14 - TSS region transcription start site region 110740
Tssr110741 11 100121704 to 100121711 7 - TSS region transcription start site region 110741
Tssr104900 11 100129299 to 100129305 6 + TSS region transcription start site region 104900
30.MMHAP38FLB6.seq 11 100129813 to 100129974 161 DNA segment DNA segment, 30.MMHAP38FLB6.seq
Krt15 11 100131758 to 100135928 4170 - protein coding gene keratin 15
Tssr104901 11 100133634 to 100133676 42 + TSS region transcription start site region 104901
Tssr104902 11 100133678 to 100133699 21 + TSS region transcription start site region 104902
Tssr104903 11 100133760 to 100133771 11 + TSS region transcription start site region 104903
Tssr110742 11 100134496 to 100134552 56 - TSS region transcription start site region 110742
Tssr104904 11 100135377 to 100135421 44 + TSS region transcription start site region 104904
Tssr104905 11 100135466 to 100135482 16 + TSS region transcription start site region 104905
Tssr110743 11 100135501 to 100135528 27 - TSS region transcription start site region 110743
Tssr110744 11 100135939 to 100135954 15 - TSS region transcription start site region 110744
Tssr110745 11 100136049 to 100136087 38 - TSS region transcription start site region 110745
Tssr110746 11 100137768 to 100137787 19 - TSS region transcription start site region 110746
Tssr104906 11 100140590 to 100140593 3 + TSS region transcription start site region 104906
Krt19 11 100140810 to 100145926 5116 - protein coding gene keratin 19
Tssr104907 11 100140814 to 100140817 3 + TSS region transcription start site region 104907
Tssr110747 11 100140852 to 100140875 23 - TSS region transcription start site region 110747
Tssr104908 11 100140895 to 100140917 22 + TSS region transcription start site region 104908
Tssr104909 11 100140923 to 100140958 35 + TSS region transcription start site region 104909
Tssr104910 11 100141000 to 100141013 13 + TSS region transcription start site region 104910
Tssr110748 11 100141011 to 100141158 147 - TSS region transcription start site region 110748
Cpgi3804 11 100141024 to 100141210 186 CpG island CpG island 3804
Tssr104911 11 100141321 to 100141362 41 + TSS region transcription start site region 104911
Tssr104912 11 100141524 to 100141567 43 + TSS region transcription start site region 104912
Tssr110749 11 100141547 to 100141593 46 - TSS region transcription start site region 110749
Tssr110750 11 100141628 to 100141646 18 - TSS region transcription start site region 110750
Tssr110751 11 100141678 to 100141690 12 - TSS region transcription start site region 110751
Tssr110752 11 100141827 to 100141857 30 - TSS region transcription start site region 110752
Tssr110753 11 100142127 to 100142151 24 - TSS region transcription start site region 110753
Tssr110754 11 100142186 to 100142208 22 - TSS region transcription start site region 110754
D11Mit1003 11 100143011 to 100143274 263 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 1003
Tssr110755 11 100143563 to 100143587 24 - TSS region transcription start site region 110755
Tssr110756 11 100143705 to 100143742 37 - TSS region transcription start site region 110756
D11Mit59.2 11 100144456 to 100144614 158 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 59.2
D11Mit59 11 100144564 to 100144799 235 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 59
D11Mit59.1 11 100144730 to 100144848 118 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 59.1
Cpgi3805 11 100145263 to 100145898 635 CpG island CpG island 3805
Tssr104913 11 100145449 to 100145474 25 + TSS region transcription start site region 104913
Tssr104914 11 100145550 to 100145559 9 + TSS region transcription start site region 104914
Tssr104915 11 100145577 to 100145626 49 + TSS region transcription start site region 104915
Tssr110757 11 100145918 to 100145935 17 - TSS region transcription start site region 110757
Tssr110758 11 100145941 to 100145946 5 - TSS region transcription start site region 110758
Tssr110759 11 100145966 to 100145978 12 - TSS region transcription start site region 110759
Tssr104916 11 100164647 to 100164654 7 + TSS region transcription start site region 104916
Gm39022 11 100166772 to 100181390 14618 + lncRNA gene predicted gene, 39022