Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:99520118-99940121

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Krt39 11 99514624 to 99521258 6634 - protein coding gene keratin 39
Tssr110675 11 99521290 to 99521295 5 - TSS region transcription start site region 110675
Tssr110676 11 99521336 to 99521340 4 - TSS region transcription start site region 110676
Tssr110677 11 99521603 to 99521606 3 - TSS region transcription start site region 110677
D11Mit198 11 99525452 to 99525747 295 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 198
Tssr104881 11 99533462 to 99533468 6 + TSS region transcription start site region 104881
Krt40 11 99537485 to 99543158 5673 - protein coding gene keratin 40
Tssr110678 11 99543216 to 99543222 6 - TSS region transcription start site region 110678
Krtap3-3 11 99550132 to 99550863 731 - protein coding gene keratin associated protein 3-3
Tssr110679 11 99550861 to 99550867 6 - TSS region transcription start site region 110679
Krtap3-2 11 99555823 to 99556853 1030 - protein coding gene keratin associated protein 3-2
Tssr110680 11 99556846 to 99556858 12 - TSS region transcription start site region 110680
Gm11939 11 99559167 to 99559466 299 - protein coding gene predicted gene 11939
Tssr110681 11 99559505 to 99559512 7 - TSS region transcription start site region 110681
Krtap3-1 11 99566027 to 99566630 603 - protein coding gene keratin associated protein 3-1
Tssr3666 11 99566363 to 99566368 5 - TSS region transcription start site region 3666
Tssr110682 11 99566421 to 99566439 18 - TSS region transcription start site region 110682
Tssr110683 11 99566495 to 99566498 3 - TSS region transcription start site region 110683
Tssr110684 11 99566619 to 99566646 27 - TSS region transcription start site region 110684
Krtap1-5 11 99579977 to 99581016 1039 - protein coding gene keratin associated protein 1-5
Tssr104882 11 99580567 to 99580592 25 + TSS region transcription start site region 104882
Tssr110685 11 99580703 to 99580739 36 - TSS region transcription start site region 110685
Tssr110686 11 99581009 to 99581024 15 - TSS region transcription start site region 110686
Gm32730 11 99581773 to 99631259 49486 + lncRNA gene predicted gene, 32730
Krtap1-4 11 99583062 to 99583654 592 - protein coding gene keratin associated protein 1-4
Tssr110687 11 99583675 to 99583682 7 - TSS region transcription start site region 110687
Krtap1-3 11 99590461 to 99591339 878 - protein coding gene keratin associated protein 1-3
Tssr110688 11 99591375 to 99591380 5 - TSS region transcription start site region 110688
Krtap9-3 11 99597348 to 99598106 758 - protein coding gene keratin associated protein 9-3
Tssr110689 11 99598095 to 99598111 16 - TSS region transcription start site region 110689
Tssr110690 11 99598141 to 99598147 6 - TSS region transcription start site region 110690
Gm11938 11 99602646 to 99603308 662 - protein coding gene predicted gene 11938
Gm11937 11 99609794 to 99610189 395 - protein coding gene predicted gene 11937
Tssr3667 11 99610246 to 99610253 7 - TSS region transcription start site region 3667
Tssr110691 11 99610417 to 99610422 5 - TSS region transcription start site region 110691
Tssr110692 11 99610427 to 99610434 7 - TSS region transcription start site region 110692
Krtap2-4 11 99614019 to 99614846 827 - protein coding gene keratin associated protein 2-4
Tssr110693 11 99614845 to 99614847 2 - TSS region transcription start site region 110693
Gm11562 11 99619598 to 99620404 806 - protein coding gene predicted gene 11562
Tssr110694 11 99620432 to 99620436 4 - TSS region transcription start site region 110694
Tssr110695 11 99620917 to 99620922 5 - TSS region transcription start site region 110695
Tssr104883 11 99620972 to 99620976 4 + TSS region transcription start site region 104883
Krtap4-1 11 99627229 to 99628239 1010 - protein coding gene keratin associated protein 4-1
Tssr110696 11 99628231 to 99628242 11 - TSS region transcription start site region 110696
Krtap4-2 11 99634114 to 99635084 970 - protein coding gene keratin associated protein 4-2
Tssr110697 11 99635076 to 99635086 10 - TSS region transcription start site region 110697
Krtap4-7 11 99643112 to 99644089 977 - protein coding gene keratin associated protein 4-7
Tssr110698 11 99643552 to 99643567 15 - TSS region transcription start site region 110698
Tssr110699 11 99643981 to 99643999 18 - TSS region transcription start site region 110699
Tssr110700 11 99644086 to 99644090 4 - TSS region transcription start site region 110700
D11Mit99 11 99648838 to 99648959 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 99
Gm11555 11 99649654 to 99650181 527 - protein coding gene predicted gene 11555
Tssr110701 11 99650234 to 99650237 3 - TSS region transcription start site region 110701
Gm11563 11 99657949 to 99658960 1011 - protein coding gene predicted gene 11563
Tssr110702 11 99658978 to 99658984 6 - TSS region transcription start site region 110702
Gm14182 11 99662893 to 99663102 209 - pseudogene predicted gene 14182
Tssr110703 11 99663187 to 99663192 5 - TSS region transcription start site region 110703
Krtap4-6 11 99665043 to 99665960 917 - protein coding gene keratin associated protein 4-6
Tssr104884 11 99665253 to 99665256 3 + TSS region transcription start site region 104884
Tssr110704 11 99665668 to 99665685 17 - TSS region transcription start site region 110704
Tssr110705 11 99665955 to 99665961 6 - TSS region transcription start site region 110705
Gm11557 11 99678126 to 99679133 1007 + pseudogene predicted gene 11557
4930415H17Rik 11 99683618 to 99683740 122 - pseudogene RIKEN cDNA 4930415H17 gene
Gm14190 11 99690588 to 99690740 152 - protein coding gene predicted gene 14190
Tssr110706 11 99696451 to 99696455 4 - TSS region transcription start site region 110706
Tssr110707 11 99710271 to 99710275 4 - TSS region transcription start site region 110707
Gm14186 11 99718892 to 99719028 136 - pseudogene predicted gene 14186
Tssr3668 11 99730118 to 99730121 3 + TSS region transcription start site region 3668
Gm14193 11 99730175 to 99730327 152 + pseudogene predicted gene 14193
Gm14180 11 99734213 to 99734290 77 - protein coding gene predicted gene 14180
Tssr110708 11 99740121 to 99740125 4 - TSS region transcription start site region 110708
Tssr110709 11 99759225 to 99759230 5 - TSS region transcription start site region 110709
Gm14188 11 99763933 to 99764100 167 - pseudogene predicted gene 14188
Tssr110710 11 99764153 to 99764157 4 - TSS region transcription start site region 110710
Gm11595 11 99771714 to 99772913 1199 - protein coding gene predicted gene 11595
Tssr3669 11 99772914 to 99772916 2 - TSS region transcription start site region 3669
Krtap4-8 11 99780014 to 99780643 629 - protein coding gene keratin associated protein 4-8
Tssr104885 11 99785191 to 99785198 7 + TSS region transcription start site region 104885
Krtap4-9 11 99785200 to 99786257 1057 + protein coding gene keratin associated protein 4-9
Gm11596 11 99792675 to 99793292 617 - protein coding gene predicted gene 11596
Tssr110711 11 99793347 to 99793354 7 - TSS region transcription start site region 110711
Gm11569 11 99798064 to 99798932 868 - protein coding gene predicted gene 11569
Gm11554 11 99803670 to 99804446 776 - protein coding gene predicted gene 11554
Krtap4-13 11 99809078 to 99809892 814 - protein coding gene keratin associated protein 4-13
Gm11564 11 99814976 to 99815666 690 - protein coding gene predicted gene 11564
Tssr110712 11 99815661 to 99815664 3 - TSS region transcription start site region 110712
2300003K06Rik 11 99837148 to 99838066 918 - protein coding gene RIKEN cDNA 2300003K06 gene
Tssr110713 11 99838069 to 99838073 4 - TSS region transcription start site region 110713
Gm11556 11 99839973 to 99840260 287 - pseudogene predicted gene 11556
Tssr110714 11 99840345 to 99840368 23 - TSS region transcription start site region 110714
Krtap4-16 11 99850655 to 99851605 950 - protein coding gene keratin associated protein 4-16
Tssr110715 11 99851627 to 99851632 5 - TSS region transcription start site region 110715
Gm26324 11 99856308 to 99856414 106 + snRNA gene predicted gene, 26324
Tssr104886 11 99857915 to 99857918 3 + TSS region transcription start site region 104886
Gm11568 11 99857917 to 99859061 1144 + protein coding gene predicted gene 11568
Tssr110716 11 99858722 to 99858741 19 - TSS region transcription start site region 110716
Tssr110717 11 99858744 to 99858754 10 - TSS region transcription start site region 110717
Tssr110718 11 99858760 to 99858763 3 - TSS region transcription start site region 110718
Gm11559 11 99864476 to 99865571 1095 + protein coding gene predicted gene 11559
Tssr104887 11 99865094 to 99865109 15 + TSS region transcription start site region 104887
Krtap9-1 11 99873389 to 99874000 611 + protein coding gene keratin associated protein 9-1
Gm11567 11 99879187 to 99880229 1042 + protein coding gene predicted gene 11567
Gm11566 11 99897573 to 99897775 202 + pseudogene predicted gene 11566
Tssr104888 11 99907918 to 99907922 4 + TSS region transcription start site region 104888
Krtap31-1 11 99907920 to 99908890 970 + protein coding gene keratin associated protein 31-1
Tssr104889 11 99914729 to 99914733 4 + TSS region transcription start site region 104889
Gm11565 11 99914751 to 99915671 920 + protein coding gene predicted gene 11565
Tssr104890 11 99932020 to 99932029 9 + TSS region transcription start site region 104890
Cpgi3801 11 99932101 to 99932330 229 CpG island CpG island 3801
Gm11560 11 99932162 to 99933098 936 + pseudogene predicted gene 11560
Tssr104891 11 99932945 to 99932954 9 + TSS region transcription start site region 104891
Tssr104892 11 99936289 to 99936293 4 + TSS region transcription start site region 104892
Krtap31-2 11 99936291 to 99937225 934 + protein coding gene keratin associated protein 31-2