Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:99495014-100065643

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143 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Krt39 11 99514624 to 99521258 6634 - protein coding gene keratin 39
Tssr110675 11 99521290 to 99521295 5 - TSS region transcription start site region 110675
Tssr110676 11 99521336 to 99521340 4 - TSS region transcription start site region 110676
Tssr110677 11 99521603 to 99521606 3 - TSS region transcription start site region 110677
D11Mit198 11 99525452 to 99525747 295 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 198
Tssr104881 11 99533462 to 99533468 6 + TSS region transcription start site region 104881
Krt40 11 99537485 to 99543158 5673 - protein coding gene keratin 40
Tssr110678 11 99543216 to 99543222 6 - TSS region transcription start site region 110678
Krtap3-3 11 99550132 to 99550863 731 - protein coding gene keratin associated protein 3-3
Tssr110679 11 99550861 to 99550867 6 - TSS region transcription start site region 110679
Krtap3-2 11 99555823 to 99556853 1030 - protein coding gene keratin associated protein 3-2
Tssr110680 11 99556846 to 99556858 12 - TSS region transcription start site region 110680
Gm11939 11 99559167 to 99559466 299 - protein coding gene predicted gene 11939
Tssr110681 11 99559505 to 99559512 7 - TSS region transcription start site region 110681
Krtap3-1 11 99566027 to 99566630 603 - protein coding gene keratin associated protein 3-1
Tssr3666 11 99566363 to 99566368 5 - TSS region transcription start site region 3666
Tssr110682 11 99566421 to 99566439 18 - TSS region transcription start site region 110682
Tssr110683 11 99566495 to 99566498 3 - TSS region transcription start site region 110683
Tssr110684 11 99566619 to 99566646 27 - TSS region transcription start site region 110684
Krtap1-5 11 99579977 to 99581016 1039 - protein coding gene keratin associated protein 1-5
Tssr104882 11 99580567 to 99580592 25 + TSS region transcription start site region 104882
Tssr110685 11 99580703 to 99580739 36 - TSS region transcription start site region 110685
Tssr110686 11 99581009 to 99581024 15 - TSS region transcription start site region 110686
Gm32730 11 99581773 to 99631259 49486 + lncRNA gene predicted gene, 32730
Krtap1-4 11 99583062 to 99583654 592 - protein coding gene keratin associated protein 1-4
Tssr110687 11 99583675 to 99583682 7 - TSS region transcription start site region 110687
Krtap1-3 11 99590461 to 99591339 878 - protein coding gene keratin associated protein 1-3
Tssr110688 11 99591375 to 99591380 5 - TSS region transcription start site region 110688
Krtap9-3 11 99597348 to 99598106 758 - protein coding gene keratin associated protein 9-3
Tssr110689 11 99598095 to 99598111 16 - TSS region transcription start site region 110689
Tssr110690 11 99598141 to 99598147 6 - TSS region transcription start site region 110690
Gm11938 11 99602646 to 99603308 662 - protein coding gene predicted gene 11938
Gm11937 11 99609794 to 99610189 395 - protein coding gene predicted gene 11937
Tssr3667 11 99610246 to 99610253 7 - TSS region transcription start site region 3667
Tssr110691 11 99610417 to 99610422 5 - TSS region transcription start site region 110691
Tssr110692 11 99610427 to 99610434 7 - TSS region transcription start site region 110692
Krtap2-4 11 99614019 to 99614846 827 - protein coding gene keratin associated protein 2-4
Tssr110693 11 99614845 to 99614847 2 - TSS region transcription start site region 110693
Gm11562 11 99619598 to 99620404 806 - protein coding gene predicted gene 11562
Tssr110694 11 99620432 to 99620436 4 - TSS region transcription start site region 110694
Tssr110695 11 99620917 to 99620922 5 - TSS region transcription start site region 110695
Tssr104883 11 99620972 to 99620976 4 + TSS region transcription start site region 104883
Krtap4-1 11 99627229 to 99628239 1010 - protein coding gene keratin associated protein 4-1
Tssr110696 11 99628231 to 99628242 11 - TSS region transcription start site region 110696
Krtap4-2 11 99634114 to 99635084 970 - protein coding gene keratin associated protein 4-2
Tssr110697 11 99635076 to 99635086 10 - TSS region transcription start site region 110697
Krtap4-7 11 99643112 to 99644089 977 - protein coding gene keratin associated protein 4-7
Tssr110698 11 99643552 to 99643567 15 - TSS region transcription start site region 110698
Tssr110699 11 99643981 to 99643999 18 - TSS region transcription start site region 110699
Tssr110700 11 99644086 to 99644090 4 - TSS region transcription start site region 110700
D11Mit99 11 99648838 to 99648959 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 99
Gm11555 11 99649654 to 99650181 527 - protein coding gene predicted gene 11555
Tssr110701 11 99650234 to 99650237 3 - TSS region transcription start site region 110701
Gm11563 11 99657949 to 99658960 1011 - protein coding gene predicted gene 11563
Tssr110702 11 99658978 to 99658984 6 - TSS region transcription start site region 110702
Gm14182 11 99662893 to 99663102 209 - pseudogene predicted gene 14182
Tssr110703 11 99663187 to 99663192 5 - TSS region transcription start site region 110703
Krtap4-6 11 99665043 to 99665960 917 - protein coding gene keratin associated protein 4-6
Tssr104884 11 99665253 to 99665256 3 + TSS region transcription start site region 104884
Tssr110704 11 99665668 to 99665685 17 - TSS region transcription start site region 110704
Tssr110705 11 99665955 to 99665961 6 - TSS region transcription start site region 110705
Gm11557 11 99678126 to 99679133 1007 + pseudogene predicted gene 11557
4930415H17Rik 11 99683618 to 99683740 122 - pseudogene RIKEN cDNA 4930415H17 gene
Gm14190 11 99690588 to 99690740 152 - protein coding gene predicted gene 14190
Tssr110706 11 99696451 to 99696455 4 - TSS region transcription start site region 110706
Tssr110707 11 99710271 to 99710275 4 - TSS region transcription start site region 110707
Gm14186 11 99718892 to 99719028 136 - pseudogene predicted gene 14186
Tssr3668 11 99730118 to 99730121 3 + TSS region transcription start site region 3668
Gm14193 11 99730175 to 99730327 152 + pseudogene predicted gene 14193
Gm14180 11 99734213 to 99734290 77 - protein coding gene predicted gene 14180
Tssr110708 11 99740121 to 99740125 4 - TSS region transcription start site region 110708
Tssr110709 11 99759225 to 99759230 5 - TSS region transcription start site region 110709
Gm14188 11 99763933 to 99764100 167 - pseudogene predicted gene 14188
Tssr110710 11 99764153 to 99764157 4 - TSS region transcription start site region 110710
Gm11595 11 99771714 to 99772913 1199 - protein coding gene predicted gene 11595
Tssr3669 11 99772914 to 99772916 2 - TSS region transcription start site region 3669
Krtap4-8 11 99780014 to 99780643 629 - protein coding gene keratin associated protein 4-8
Tssr104885 11 99785191 to 99785198 7 + TSS region transcription start site region 104885
Krtap4-9 11 99785200 to 99786257 1057 + protein coding gene keratin associated protein 4-9
Gm11596 11 99792675 to 99793292 617 - protein coding gene predicted gene 11596
Tssr110711 11 99793347 to 99793354 7 - TSS region transcription start site region 110711
Gm11569 11 99798064 to 99798932 868 - protein coding gene predicted gene 11569
Gm11554 11 99803670 to 99804446 776 - protein coding gene predicted gene 11554
Krtap4-13 11 99809078 to 99809892 814 - protein coding gene keratin associated protein 4-13
Gm11564 11 99814976 to 99815666 690 - protein coding gene predicted gene 11564
Tssr110712 11 99815661 to 99815664 3 - TSS region transcription start site region 110712
2300003K06Rik 11 99837148 to 99838066 918 - protein coding gene RIKEN cDNA 2300003K06 gene
Tssr110713 11 99838069 to 99838073 4 - TSS region transcription start site region 110713
Gm11556 11 99839973 to 99840260 287 - pseudogene predicted gene 11556
Tssr110714 11 99840345 to 99840368 23 - TSS region transcription start site region 110714
Krtap4-16 11 99850655 to 99851605 950 - protein coding gene keratin associated protein 4-16
Tssr110715 11 99851627 to 99851632 5 - TSS region transcription start site region 110715
Gm26324 11 99856308 to 99856414 106 + snRNA gene predicted gene, 26324
Tssr104886 11 99857915 to 99857918 3 + TSS region transcription start site region 104886
Gm11568 11 99857917 to 99859061 1144 + protein coding gene predicted gene 11568
Tssr110716 11 99858722 to 99858741 19 - TSS region transcription start site region 110716
Tssr110717 11 99858744 to 99858754 10 - TSS region transcription start site region 110717
Tssr110718 11 99858760 to 99858763 3 - TSS region transcription start site region 110718
Gm11559 11 99864476 to 99865571 1095 + protein coding gene predicted gene 11559
Tssr104887 11 99865094 to 99865109 15 + TSS region transcription start site region 104887
Krtap9-1 11 99873389 to 99874000 611 + protein coding gene keratin associated protein 9-1
Gm11567 11 99879187 to 99880229 1042 + protein coding gene predicted gene 11567
Gm11566 11 99897573 to 99897775 202 + pseudogene predicted gene 11566
Tssr104888 11 99907918 to 99907922 4 + TSS region transcription start site region 104888
Krtap31-1 11 99907920 to 99908890 970 + protein coding gene keratin associated protein 31-1
Tssr104889 11 99914729 to 99914733 4 + TSS region transcription start site region 104889
Gm11565 11 99914751 to 99915671 920 + protein coding gene predicted gene 11565
Tssr104890 11 99932020 to 99932029 9 + TSS region transcription start site region 104890
Cpgi3801 11 99932101 to 99932330 229 CpG island CpG island 3801
Gm11560 11 99932162 to 99933098 936 + pseudogene predicted gene 11560
Tssr104891 11 99932945 to 99932954 9 + TSS region transcription start site region 104891
Tssr104892 11 99936289 to 99936293 4 + TSS region transcription start site region 104892
Krtap31-2 11 99936291 to 99937225 934 + protein coding gene keratin associated protein 31-2
Tssr104893 11 99948420 to 99948429 9 + TSS region transcription start site region 104893
Krtap9-5 11 99948475 to 99949551 1076 + protein coding gene keratin associated protein 9-5
Gm11561 11 99955607 to 99956023 416 + pseudogene predicted gene 11561
Gm11553 11 99961079 to 99961318 239 + pseudogene predicted gene 11553
Krtap29-1 11 99978025 to 99979053 1028 - protein coding gene keratin associated protein 29-1
Tssr110719 11 99979097 to 99979103 6 - TSS region transcription start site region 110719
Krtap16-1 11 99984710 to 99986597 1887 - protein coding gene keratin associated protein 16-1
Cpgi3802 11 99985176 to 99985531 355 CpG island CpG island 3802
Tssr110720 11 99986606 to 99986608 2 - TSS region transcription start site region 110720
Gm11558 11 99988134 to 99988592 458 - pseudogene predicted gene 11558
Krtap17-1 11 99993234 to 99993994 760 - protein coding gene keratin associated protein 17-1
Cpgi3803 11 99993541 to 99993939 398 CpG island CpG island 3803
Tssr110721 11 99993992 to 99993997 5 - TSS region transcription start site region 110721
33.MMHAP16FRC12.seq 11 99999751 to 99999915 164 DNA segment DNA segment, 33.MMHAP16FRC12.seq
Krt33a 11 100011199 to 100016212 5013 - protein coding gene keratin 33A
Tssr110722 11 100016204 to 100016216 12 - TSS region transcription start site region 110722
Krt33b 11 100023634 to 100029868 6234 - protein coding gene keratin 33B
Tssr110723 11 100029883 to 100029887 4 - TSS region transcription start site region 110723
Krt34 11 100037347 to 100041554 4207 - protein coding gene keratin 34
Tssr110724 11 100041547 to 100041561 14 - TSS region transcription start site region 110724
Tssr110725 11 100046542 to 100046549 7 - TSS region transcription start site region 110725
Krt31 11 100046646 to 100050551 3905 - protein coding gene keratin 31
Tssr110726 11 100050542 to 100050557 15 - TSS region transcription start site region 110726
D11Mit123.3 11 100050659 to 100050887 228 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 123.3
D11Mit123 11 100050723 to 100051036 313 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 123
D11Dcr21 11 100050877 to 100051021 144 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 21
Tssr104894 11 100052104 to 100052115 11 + TSS region transcription start site region 104894
Tssr104895 11 100052260 to 100052265 5 + TSS region transcription start site region 104895
Tssr104896 11 100052281 to 100052292 11 + TSS region transcription start site region 104896
Gm11571 11 100052286 to 100085983 33697 + antisense lncRNA gene predicted gene 11571