Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 11:99221201-99421216

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72 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smarce1 11 99209047 to 99231017 21970 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Cpgi3789 11 99229960 to 99231201 1241 CpG island CpG island 3789
Tssr110636 11 99230430 to 99230464 34 - TSS region transcription start site region 110636
Tssr110637 11 99230688 to 99230704 16 - TSS region transcription start site region 110637
Tssr110638 11 99230890 to 99230901 11 - TSS region transcription start site region 110638
Tssr110639 11 99230919 to 99230959 40 - TSS region transcription start site region 110639
Tssr110640 11 99230966 to 99230988 22 - TSS region transcription start site region 110640
Tssr110641 11 99230998 to 99231019 21 - TSS region transcription start site region 110641
Krt222 11 99232761 to 99244085 11324 - protein coding gene keratin 222
Cpgi3790 11 99238485 to 99238750 265 CpG island CpG island 3790
D11Mit249 11 99241471 to 99241580 109 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 249
Gm32385 11 99243653 to 99305492 61839 + lncRNA gene predicted gene, 32385
Cpgi3791 11 99243953 to 99244135 182 CpG island CpG island 3791
Tssr110642 11 99244058 to 99244136 78 - TSS region transcription start site region 110642
Krt24 11 99279959 to 99285262 5303 - protein coding gene keratin 24
Tssr104867 11 99280223 to 99280251 28 + TSS region transcription start site region 104867
Tssr110643 11 99285260 to 99285264 4 - TSS region transcription start site region 110643
Gm12358 11 99305148 to 99306140 992 - pseudogene predicted gene 12358
Krt25 11 99315516 to 99322951 7435 - protein coding gene keratin 25
Tssr110644 11 99318586 to 99318608 22 - TSS region transcription start site region 110644
Tssr110645 11 99321201 to 99321216 15 - TSS region transcription start site region 110645
Gm32502 11 99322537 to 99333259 10722 + lncRNA gene predicted gene, 32502
Cpgi3792 11 99322724 to 99322879 155 CpG island CpG island 3792
Tssr110646 11 99322943 to 99322957 14 - TSS region transcription start site region 110646
Krt26 11 99328550 to 99337966 9416 - protein coding gene keratin 26
Tssr110647 11 99337930 to 99337967 37 - TSS region transcription start site region 110647
Krt27 11 99345565 to 99351104 5539 - protein coding gene keratin 27
Tssr110648 11 99346535 to 99346539 4 - TSS region transcription start site region 110648
Cpgi3793 11 99348834 to 99349132 298 CpG island CpG island 3793
Tssr110649 11 99350003 to 99350019 16 - TSS region transcription start site region 110649
Cpgi3794 11 99350858 to 99351124 266 CpG island CpG island 3794
Tssr110650 11 99351086 to 99351113 27 - TSS region transcription start site region 110650
Krt28 11 99365007 to 99374903 9896 - protein coding gene keratin 28
Tssr110651 11 99366099 to 99366115 16 - TSS region transcription start site region 110651
Cpgi3795 11 99371199 to 99371469 270 CpG island CpG island 3795
Cpgi3796 11 99374722 to 99374900 178 CpG island CpG island 3796
Tssr110652 11 99374895 to 99374909 14 - TSS region transcription start site region 110652
Krt10 11 99385254 to 99389364 4110 - protein coding gene keratin 10
Tssr110653 11 99385279 to 99385303 24 - TSS region transcription start site region 110653
Tssr110654 11 99385326 to 99385339 13 - TSS region transcription start site region 110654
Tssr104868 11 99385587 to 99385601 14 + TSS region transcription start site region 104868
Cpgi3797 11 99385871 to 99386726 855 CpG island CpG island 3797
Tssr110655 11 99386042 to 99386086 44 - TSS region transcription start site region 110655
Tssr110656 11 99386087 to 99386099 12 - TSS region transcription start site region 110656
Tssr110657 11 99386100 to 99386160 60 - TSS region transcription start site region 110657
Tssr110658 11 99386582 to 99386699 117 - TSS region transcription start site region 110658
Tssr110659 11 99387124 to 99387135 11 - TSS region transcription start site region 110659
Tssr110660 11 99387315 to 99387332 17 - TSS region transcription start site region 110660
Tssr104869 11 99387332 to 99387345 13 + TSS region transcription start site region 104869
Gm11940 11 99387340 to 99387897 557 + lncRNA gene predicted gene 11940
Tssr110661 11 99387634 to 99387660 26 - TSS region transcription start site region 110661
Tssr110662 11 99388067 to 99388101 34 - TSS region transcription start site region 110662
Tssr104870 11 99388740 to 99388753 13 + TSS region transcription start site region 104870
Tssr104871 11 99388786 to 99388853 67 + TSS region transcription start site region 104871
Tssr104872 11 99388972 to 99388983 11 + TSS region transcription start site region 104872
Tssr104873 11 99388985 to 99389009 24 + TSS region transcription start site region 104873
Tssr104874 11 99389047 to 99389062 15 + TSS region transcription start site region 104874
Tssr3665 11 99389075 to 99389084 9 + TSS region transcription start site region 3665
Tssr104875 11 99389085 to 99389129 44 + TSS region transcription start site region 104875
Tssr110663 11 99389351 to 99389369 18 - TSS region transcription start site region 110663
Tssr104876 11 99391214 to 99391220 6 + TSS region transcription start site region 104876
Tssr110664 11 99405835 to 99405840 5 - TSS region transcription start site region 110664
Krt12 11 99415666 to 99422259 6593 - protein coding gene keratin 12
Tssr110665 11 99416969 to 99416987 18 - TSS region transcription start site region 110665
Tssr104877 11 99417141 to 99417152 11 + TSS region transcription start site region 104877
Tssr104878 11 99417222 to 99417268 46 + TSS region transcription start site region 104878
A830036E02Rik 11 99417243 to 99423098 5855 + lncRNA gene RIKEN cDNA A830036E02 gene
Tssr104879 11 99417275 to 99417307 32 + TSS region transcription start site region 104879
Cpgi3798 11 99417917 to 99418283 366 CpG island CpG island 3798
Tssr110666 11 99418390 to 99418427 37 - TSS region transcription start site region 110666
Tssr110667 11 99418428 to 99418440 12 - TSS region transcription start site region 110667
Tssr104880 11 99421013 to 99421017 4 + TSS region transcription start site region 104880