Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:98943712-99043715

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rara 11 98927818 to 98974942 47124 + protein coding gene retinoic acid receptor, alpha
Tssr104825 11 98944199 to 98944243 44 + TSS region transcription start site region 104825
Tssr104826 11 98944426 to 98944457 31 + TSS region transcription start site region 104826
Gm22061 11 98946444 to 98946550 106 + snRNA gene predicted gene, 22061
Cpgi3783 11 98947977 to 98948226 249 CpG island CpG island 3783
Cpgi3784 11 98959519 to 98961334 1815 CpG island CpG island 3784
Tssr110607 11 98959523 to 98959527 4 - TSS region transcription start site region 110607
Tssr104827 11 98959756 to 98959771 15 + TSS region transcription start site region 104827
Tssr104828 11 98959782 to 98959801 19 + TSS region transcription start site region 104828
Tssr104829 11 98960435 to 98960485 50 + TSS region transcription start site region 104829
Tssr104830 11 98960544 to 98960593 49 + TSS region transcription start site region 104830
Tssr104831 11 98960603 to 98960620 17 + TSS region transcription start site region 104831
Tssr104832 11 98960623 to 98960673 50 + TSS region transcription start site region 104832
Tssr104833 11 98960733 to 98960758 25 + TSS region transcription start site region 104833
Tssr104834 11 98960767 to 98960778 11 + TSS region transcription start site region 104834
Tssr104835 11 98960779 to 98960790 11 + TSS region transcription start site region 104835
Tssr110608 11 98961528 to 98961549 21 - TSS region transcription start site region 110608
Cpgi3785 11 98963500 to 98963916 416 CpG island CpG island 3785
Tssr104836 11 98964811 to 98964827 16 + TSS region transcription start site region 104836
Tssr104837 11 98964864 to 98964883 19 + TSS region transcription start site region 104837
Tssr104838 11 98964902 to 98964913 11 + TSS region transcription start site region 104838
Tssr110609 11 98968745 to 98968757 12 - TSS region transcription start site region 110609
Tssr110610 11 98968778 to 98968795 17 - TSS region transcription start site region 110610
Tssr110611 11 98968800 to 98968809 9 - TSS region transcription start site region 110611
Tssr104839 11 98974588 to 98974603 15 + TSS region transcription start site region 104839
Cpgi3786 11 98981547 to 98983409 1862 CpG island CpG island 3786
Gjd3 11 98982180 to 98983016 836 - protein coding gene gap junction protein, delta 3
Top2a 11 98992943 to 99024189 31246 - protein coding gene topoisomerase (DNA) II alpha
Tssr110612 11 98993712 to 98993715 3 - TSS region transcription start site region 110612
Tssr110613 11 98999227 to 98999240 13 - TSS region transcription start site region 110613
Gm26394 11 98999508 to 98999622 114 + snoRNA gene predicted gene, 26394
Tssr110614 11 99001053 to 99001070 17 - TSS region transcription start site region 110614
Tssr110615 11 99001394 to 99001397 3 - TSS region transcription start site region 110615
Tssr110616 11 99003042 to 99003071 29 - TSS region transcription start site region 110616
Tssr110617 11 99003559 to 99003563 4 - TSS region transcription start site region 110617
Gm23451 11 99017031 to 99017152 121 - snoRNA gene predicted gene, 23451
Cpgi3787 11 99023626 to 99024459 833 CpG island CpG island 3787
Tssr110618 11 99024179 to 99024197 18 - TSS region transcription start site region 110618
Cpgi3788 11 99040780 to 99042067 1287 CpG island CpG island 3788
Tssr104840 11 99041237 to 99041254 17 + TSS region transcription start site region 104840
Igfbp4 11 99041260 to 99052646 11386 + protein coding gene insulin-like growth factor binding protein 4
Tssr104841 11 99041262 to 99041267 5 + TSS region transcription start site region 104841
Tssr104842 11 99041897 to 99041938 41 + TSS region transcription start site region 104842