Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:98932109-99172135

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rara 11 98927818 to 98974942 47124 + protein coding gene retinoic acid receptor, alpha
Cpgi3781 11 98936159 to 98936674 515 CpG island CpG island 3781
Tssr104817 11 98937153 to 98937170 17 + TSS region transcription start site region 104817
Gm46294 11 98937275 to 98942287 5012 - protein coding gene predicted gene, 46294
Cpgi3782 11 98937286 to 98938404 1118 CpG island CpG island 3782
Tssr104818 11 98937669 to 98937735 66 + TSS region transcription start site region 104818
Tssr104819 11 98938376 to 98938387 11 + TSS region transcription start site region 104819
Tssr110604 11 98939610 to 98939623 13 - TSS region transcription start site region 110604
Tssr110605 11 98939649 to 98939679 30 - TSS region transcription start site region 110605
Tssr104820 11 98939898 to 98939910 12 + TSS region transcription start site region 104820
Tssr104821 11 98939914 to 98939944 30 + TSS region transcription start site region 104821
Tssr110606 11 98941907 to 98941932 25 - TSS region transcription start site region 110606
Tssr104822 11 98942387 to 98942396 9 + TSS region transcription start site region 104822
Tssr104823 11 98942487 to 98942499 12 + TSS region transcription start site region 104823
Tssr104824 11 98943473 to 98943505 32 + TSS region transcription start site region 104824
Tssr104825 11 98944199 to 98944243 44 + TSS region transcription start site region 104825
Tssr104826 11 98944426 to 98944457 31 + TSS region transcription start site region 104826
Gm22061 11 98946444 to 98946550 106 + snRNA gene predicted gene, 22061
Cpgi3783 11 98947977 to 98948226 249 CpG island CpG island 3783
Cpgi3784 11 98959519 to 98961334 1815 CpG island CpG island 3784
Tssr110607 11 98959523 to 98959527 4 - TSS region transcription start site region 110607
Tssr104827 11 98959756 to 98959771 15 + TSS region transcription start site region 104827
Tssr104828 11 98959782 to 98959801 19 + TSS region transcription start site region 104828
Tssr104829 11 98960435 to 98960485 50 + TSS region transcription start site region 104829
Tssr104830 11 98960544 to 98960593 49 + TSS region transcription start site region 104830
Tssr104831 11 98960603 to 98960620 17 + TSS region transcription start site region 104831
Tssr104832 11 98960623 to 98960673 50 + TSS region transcription start site region 104832
Tssr104833 11 98960733 to 98960758 25 + TSS region transcription start site region 104833
Tssr104834 11 98960767 to 98960778 11 + TSS region transcription start site region 104834
Tssr104835 11 98960779 to 98960790 11 + TSS region transcription start site region 104835
Tssr110608 11 98961528 to 98961549 21 - TSS region transcription start site region 110608
Cpgi3785 11 98963500 to 98963916 416 CpG island CpG island 3785
Tssr104836 11 98964811 to 98964827 16 + TSS region transcription start site region 104836
Tssr104837 11 98964864 to 98964883 19 + TSS region transcription start site region 104837
Tssr104838 11 98964902 to 98964913 11 + TSS region transcription start site region 104838
Tssr110609 11 98968745 to 98968757 12 - TSS region transcription start site region 110609
Tssr110610 11 98968778 to 98968795 17 - TSS region transcription start site region 110610
Tssr110611 11 98968800 to 98968809 9 - TSS region transcription start site region 110611
Tssr104839 11 98974588 to 98974603 15 + TSS region transcription start site region 104839
Cpgi3786 11 98981547 to 98983409 1862 CpG island CpG island 3786
Gjd3 11 98982180 to 98983016 836 - protein coding gene gap junction protein, delta 3
Top2a 11 98992943 to 99024189 31246 - protein coding gene topoisomerase (DNA) II alpha
Tssr110612 11 98993712 to 98993715 3 - TSS region transcription start site region 110612
Tssr110613 11 98999227 to 98999240 13 - TSS region transcription start site region 110613
Gm26394 11 98999508 to 98999622 114 + snoRNA gene predicted gene, 26394
Tssr110614 11 99001053 to 99001070 17 - TSS region transcription start site region 110614
Tssr110615 11 99001394 to 99001397 3 - TSS region transcription start site region 110615
Tssr110616 11 99003042 to 99003071 29 - TSS region transcription start site region 110616
Tssr110617 11 99003559 to 99003563 4 - TSS region transcription start site region 110617
Gm23451 11 99017031 to 99017152 121 - snoRNA gene predicted gene, 23451
Cpgi3787 11 99023626 to 99024459 833 CpG island CpG island 3787
Tssr110618 11 99024179 to 99024197 18 - TSS region transcription start site region 110618
Cpgi3788 11 99040780 to 99042067 1287 CpG island CpG island 3788
Tssr104840 11 99041237 to 99041254 17 + TSS region transcription start site region 104840
Igfbp4 11 99041260 to 99052646 11386 + protein coding gene insulin-like growth factor binding protein 4
Tssr104841 11 99041262 to 99041267 5 + TSS region transcription start site region 104841
Tssr104842 11 99041897 to 99041938 41 + TSS region transcription start site region 104842
Tssr104843 11 99045124 to 99045129 5 + TSS region transcription start site region 104843
Tssr104844 11 99047315 to 99047326 11 + TSS region transcription start site region 104844
Tssr104845 11 99048079 to 99048116 37 + TSS region transcription start site region 104845
Tssr104846 11 99051439 to 99051453 14 + TSS region transcription start site region 104846
Tssr110619 11 99051466 to 99051504 38 - TSS region transcription start site region 110619
Tssr104847 11 99051533 to 99051545 12 + TSS region transcription start site region 104847
Tssr104848 11 99051629 to 99051693 64 + TSS region transcription start site region 104848
Tssr104849 11 99051796 to 99051818 22 + TSS region transcription start site region 104849
Tssr104850 11 99052109 to 99052135 26 + TSS region transcription start site region 104850
Tssr104851 11 99052179 to 99052190 11 + TSS region transcription start site region 104851
Tssr104852 11 99052312 to 99052338 26 + TSS region transcription start site region 104852
Tns4 11 99065678 to 99089306 23628 - protein coding gene tensin 4
Tssr110620 11 99073928 to 99073966 38 - TSS region transcription start site region 110620
Tssr110621 11 99089262 to 99089275 13 - TSS region transcription start site region 110621
Tssr110622 11 99089276 to 99089289 13 - TSS region transcription start site region 110622
Tssr110623 11 99089296 to 99089318 22 - TSS region transcription start site region 110623
Tssr104853 11 99109563 to 99109602 39 + TSS region transcription start site region 104853
Tssr110624 11 99132515 to 99132550 35 - TSS region transcription start site region 110624
Tssr110625 11 99141697 to 99141717 20 - TSS region transcription start site region 110625
Ccr7 11 99144199 to 99155077 10878 - protein coding gene chemokine (C-C motif) receptor 7
Tssr110626 11 99145076 to 99145096 20 - TSS region transcription start site region 110626
Tssr110627 11 99152256 to 99152262 6 - TSS region transcription start site region 110627
Tssr110628 11 99154016 to 99154027 11 - TSS region transcription start site region 110628
Tssr110629 11 99155018 to 99155037 19 - TSS region transcription start site region 110629
Tssr110630 11 99155067 to 99155085 18 - TSS region transcription start site region 110630
Tssr104854 11 99155172 to 99155185 13 + TSS region transcription start site region 104854
Tssr104855 11 99155219 to 99155230 11 + TSS region transcription start site region 104855
Tssr104856 11 99155231 to 99155244 13 + TSS region transcription start site region 104856
Tssr104857 11 99155270 to 99155284 14 + TSS region transcription start site region 104857
Tssr104858 11 99155313 to 99155322 9 + TSS region transcription start site region 104858
Tssr104859 11 99155398 to 99155410 12 + TSS region transcription start site region 104859
Tssr110631 11 99168007 to 99168038 31 - TSS region transcription start site region 110631
Tssr104860 11 99168125 to 99168159 34 + TSS region transcription start site region 104860
Gm32249 11 99168148 to 99171760 3612 + lncRNA gene predicted gene, 32249
Tssr104861 11 99168304 to 99168327 23 + TSS region transcription start site region 104861
Tssr104862 11 99168331 to 99168356 25 + TSS region transcription start site region 104862
Tssr104863 11 99168363 to 99168376 13 + TSS region transcription start site region 104863
Tssr104864 11 99168397 to 99168414 17 + TSS region transcription start site region 104864
Tssr104865 11 99168526 to 99168535 9 + TSS region transcription start site region 104865
Tssr110632 11 99170829 to 99170839 10 - TSS region transcription start site region 110632
Tssr104866 11 99171113 to 99171124 11 + TSS region transcription start site region 104866