Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:98924016-99384027

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144 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Abbp4 11 88808762 to 99190771 10382009 QTL A/J and C57BL/6 blood pressure 4
Cpgi3780 11 98927682 to 98928232 550 CpG island CpG island 3780
Tssr104815 11 98927785 to 98927810 25 + TSS region transcription start site region 104815
Tssr3664 11 98927814 to 98927824 10 + TSS region transcription start site region 3664
Rara 11 98927818 to 98974942 47124 + protein coding gene retinoic acid receptor, alpha
Tssr104816 11 98927826 to 98927854 28 + TSS region transcription start site region 104816
Cpgi3781 11 98936159 to 98936674 515 CpG island CpG island 3781
Tssr104817 11 98937153 to 98937170 17 + TSS region transcription start site region 104817
Gm46294 11 98937275 to 98942287 5012 - protein coding gene predicted gene, 46294
Cpgi3782 11 98937286 to 98938404 1118 CpG island CpG island 3782
Tssr104818 11 98937669 to 98937735 66 + TSS region transcription start site region 104818
Tssr104819 11 98938376 to 98938387 11 + TSS region transcription start site region 104819
Tssr110604 11 98939610 to 98939623 13 - TSS region transcription start site region 110604
Tssr110605 11 98939649 to 98939679 30 - TSS region transcription start site region 110605
Tssr104820 11 98939898 to 98939910 12 + TSS region transcription start site region 104820
Tssr104821 11 98939914 to 98939944 30 + TSS region transcription start site region 104821
Tssr110606 11 98941907 to 98941932 25 - TSS region transcription start site region 110606
Tssr104822 11 98942387 to 98942396 9 + TSS region transcription start site region 104822
Tssr104823 11 98942487 to 98942499 12 + TSS region transcription start site region 104823
Tssr104824 11 98943473 to 98943505 32 + TSS region transcription start site region 104824
Tssr104825 11 98944199 to 98944243 44 + TSS region transcription start site region 104825
Tssr104826 11 98944426 to 98944457 31 + TSS region transcription start site region 104826
Gm22061 11 98946444 to 98946550 106 + snRNA gene predicted gene, 22061
Cpgi3783 11 98947977 to 98948226 249 CpG island CpG island 3783
Cpgi3784 11 98959519 to 98961334 1815 CpG island CpG island 3784
Tssr110607 11 98959523 to 98959527 4 - TSS region transcription start site region 110607
Tssr104827 11 98959756 to 98959771 15 + TSS region transcription start site region 104827
Tssr104828 11 98959782 to 98959801 19 + TSS region transcription start site region 104828
Tssr104829 11 98960435 to 98960485 50 + TSS region transcription start site region 104829
Tssr104830 11 98960544 to 98960593 49 + TSS region transcription start site region 104830
Tssr104831 11 98960603 to 98960620 17 + TSS region transcription start site region 104831
Tssr104832 11 98960623 to 98960673 50 + TSS region transcription start site region 104832
Tssr104833 11 98960733 to 98960758 25 + TSS region transcription start site region 104833
Tssr104834 11 98960767 to 98960778 11 + TSS region transcription start site region 104834
Tssr104835 11 98960779 to 98960790 11 + TSS region transcription start site region 104835
Tssr110608 11 98961528 to 98961549 21 - TSS region transcription start site region 110608
Cpgi3785 11 98963500 to 98963916 416 CpG island CpG island 3785
Tssr104836 11 98964811 to 98964827 16 + TSS region transcription start site region 104836
Tssr104837 11 98964864 to 98964883 19 + TSS region transcription start site region 104837
Tssr104838 11 98964902 to 98964913 11 + TSS region transcription start site region 104838
Tssr110609 11 98968745 to 98968757 12 - TSS region transcription start site region 110609
Tssr110610 11 98968778 to 98968795 17 - TSS region transcription start site region 110610
Tssr110611 11 98968800 to 98968809 9 - TSS region transcription start site region 110611
Tssr104839 11 98974588 to 98974603 15 + TSS region transcription start site region 104839
Cpgi3786 11 98981547 to 98983409 1862 CpG island CpG island 3786
Gjd3 11 98982180 to 98983016 836 - protein coding gene gap junction protein, delta 3
Top2a 11 98992943 to 99024189 31246 - protein coding gene topoisomerase (DNA) II alpha
Tssr110612 11 98993712 to 98993715 3 - TSS region transcription start site region 110612
Tssr110613 11 98999227 to 98999240 13 - TSS region transcription start site region 110613
Gm26394 11 98999508 to 98999622 114 + snoRNA gene predicted gene, 26394
Tssr110614 11 99001053 to 99001070 17 - TSS region transcription start site region 110614
Tssr110615 11 99001394 to 99001397 3 - TSS region transcription start site region 110615
Tssr110616 11 99003042 to 99003071 29 - TSS region transcription start site region 110616
Tssr110617 11 99003559 to 99003563 4 - TSS region transcription start site region 110617
Gm23451 11 99017031 to 99017152 121 - snoRNA gene predicted gene, 23451
Cpgi3787 11 99023626 to 99024459 833 CpG island CpG island 3787
Tssr110618 11 99024179 to 99024197 18 - TSS region transcription start site region 110618
Cpgi3788 11 99040780 to 99042067 1287 CpG island CpG island 3788
Tssr104840 11 99041237 to 99041254 17 + TSS region transcription start site region 104840
Igfbp4 11 99041260 to 99052646 11386 + protein coding gene insulin-like growth factor binding protein 4
Tssr104841 11 99041262 to 99041267 5 + TSS region transcription start site region 104841
Tssr104842 11 99041897 to 99041938 41 + TSS region transcription start site region 104842
Tssr104843 11 99045124 to 99045129 5 + TSS region transcription start site region 104843
Tssr104844 11 99047315 to 99047326 11 + TSS region transcription start site region 104844
Tssr104845 11 99048079 to 99048116 37 + TSS region transcription start site region 104845
Tssr104846 11 99051439 to 99051453 14 + TSS region transcription start site region 104846
Tssr110619 11 99051466 to 99051504 38 - TSS region transcription start site region 110619
Tssr104847 11 99051533 to 99051545 12 + TSS region transcription start site region 104847
Tssr104848 11 99051629 to 99051693 64 + TSS region transcription start site region 104848
Tssr104849 11 99051796 to 99051818 22 + TSS region transcription start site region 104849
Tssr104850 11 99052109 to 99052135 26 + TSS region transcription start site region 104850
Tssr104851 11 99052179 to 99052190 11 + TSS region transcription start site region 104851
Tssr104852 11 99052312 to 99052338 26 + TSS region transcription start site region 104852
Tns4 11 99065678 to 99089306 23628 - protein coding gene tensin 4
Tssr110620 11 99073928 to 99073966 38 - TSS region transcription start site region 110620
Tssr110621 11 99089262 to 99089275 13 - TSS region transcription start site region 110621
Tssr110622 11 99089276 to 99089289 13 - TSS region transcription start site region 110622
Tssr110623 11 99089296 to 99089318 22 - TSS region transcription start site region 110623
Tssr104853 11 99109563 to 99109602 39 + TSS region transcription start site region 104853
Tssr110624 11 99132515 to 99132550 35 - TSS region transcription start site region 110624
Tssr110625 11 99141697 to 99141717 20 - TSS region transcription start site region 110625
Ccr7 11 99144199 to 99155077 10878 - protein coding gene chemokine (C-C motif) receptor 7
Tssr110626 11 99145076 to 99145096 20 - TSS region transcription start site region 110626
Tssr110627 11 99152256 to 99152262 6 - TSS region transcription start site region 110627
Tssr110628 11 99154016 to 99154027 11 - TSS region transcription start site region 110628
Tssr110629 11 99155018 to 99155037 19 - TSS region transcription start site region 110629
Tssr110630 11 99155067 to 99155085 18 - TSS region transcription start site region 110630
Tssr104854 11 99155172 to 99155185 13 + TSS region transcription start site region 104854
Tssr104855 11 99155219 to 99155230 11 + TSS region transcription start site region 104855
Tssr104856 11 99155231 to 99155244 13 + TSS region transcription start site region 104856
Tssr104857 11 99155270 to 99155284 14 + TSS region transcription start site region 104857
Tssr104858 11 99155313 to 99155322 9 + TSS region transcription start site region 104858
Tssr104859 11 99155398 to 99155410 12 + TSS region transcription start site region 104859
Tssr110631 11 99168007 to 99168038 31 - TSS region transcription start site region 110631
Tssr104860 11 99168125 to 99168159 34 + TSS region transcription start site region 104860
Gm32249 11 99168148 to 99171760 3612 + lncRNA gene predicted gene, 32249
Tssr104861 11 99168304 to 99168327 23 + TSS region transcription start site region 104861
Tssr104862 11 99168331 to 99168356 25 + TSS region transcription start site region 104862
Tssr104863 11 99168363 to 99168376 13 + TSS region transcription start site region 104863
Tssr104864 11 99168397 to 99168414 17 + TSS region transcription start site region 104864
Tssr104865 11 99168526 to 99168535 9 + TSS region transcription start site region 104865
Tssr110632 11 99170829 to 99170839 10 - TSS region transcription start site region 110632
Tssr104866 11 99171113 to 99171124 11 + TSS region transcription start site region 104866
D11Mit124 11 99190655 to 99190771 116 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 124
Tssr110633 11 99200087 to 99200119 32 - TSS region transcription start site region 110633
Smarce1 11 99209047 to 99231017 21970 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Tssr110634 11 99209511 to 99209537 26 - TSS region transcription start site region 110634
Tssr110635 11 99209993 to 99209999 6 - TSS region transcription start site region 110635
Cpgi3789 11 99229960 to 99231201 1241 CpG island CpG island 3789
Tssr110636 11 99230430 to 99230464 34 - TSS region transcription start site region 110636
Tssr110637 11 99230688 to 99230704 16 - TSS region transcription start site region 110637
Tssr110638 11 99230890 to 99230901 11 - TSS region transcription start site region 110638
Tssr110639 11 99230919 to 99230959 40 - TSS region transcription start site region 110639
Tssr110640 11 99230966 to 99230988 22 - TSS region transcription start site region 110640
Tssr110641 11 99230998 to 99231019 21 - TSS region transcription start site region 110641
Krt222 11 99232761 to 99244085 11324 - protein coding gene keratin 222
Cpgi3790 11 99238485 to 99238750 265 CpG island CpG island 3790
D11Mit249 11 99241471 to 99241580 109 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 249
Gm32385 11 99243895 to 99304714 60819 + lncRNA gene predicted gene, 32385
Cpgi3791 11 99243953 to 99244135 182 CpG island CpG island 3791
Tssr110642 11 99244058 to 99244136 78 - TSS region transcription start site region 110642
Krt24 11 99280093 to 99285238 5145 - protein coding gene keratin 24
Tssr104867 11 99280223 to 99280251 28 + TSS region transcription start site region 104867
Tssr110643 11 99285260 to 99285264 4 - TSS region transcription start site region 110643
Gm12358 11 99305148 to 99306140 992 - pseudogene predicted gene 12358
Krt25 11 99315516 to 99322941 7425 - protein coding gene keratin 25
Tssr110644 11 99318586 to 99318608 22 - TSS region transcription start site region 110644
Tssr110645 11 99321201 to 99321216 15 - TSS region transcription start site region 110645
Gm32502 11 99322334 to 99333259 10925 + lncRNA gene predicted gene, 32502
Cpgi3792 11 99322724 to 99322879 155 CpG island CpG island 3792
Tssr110646 11 99322943 to 99322957 14 - TSS region transcription start site region 110646
Krt26 11 99328550 to 99337966 9416 - protein coding gene keratin 26
Tssr110647 11 99337930 to 99337967 37 - TSS region transcription start site region 110647
Krt27 11 99345565 to 99351104 5539 - protein coding gene keratin 27
Tssr110648 11 99346535 to 99346539 4 - TSS region transcription start site region 110648
Cpgi3793 11 99348834 to 99349132 298 CpG island CpG island 3793
Tssr110649 11 99350003 to 99350019 16 - TSS region transcription start site region 110649
Cpgi3794 11 99350858 to 99351124 266 CpG island CpG island 3794
Tssr110650 11 99351086 to 99351113 27 - TSS region transcription start site region 110650
Krt28 11 99365007 to 99374903 9896 - protein coding gene keratin 28
Tssr110651 11 99366099 to 99366115 16 - TSS region transcription start site region 110651
Cpgi3795 11 99371199 to 99371469 270 CpG island CpG island 3795
Cpgi3796 11 99374722 to 99374900 178 CpG island CpG island 3796
Tssr110652 11 99374895 to 99374909 14 - TSS region transcription start site region 110652