Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:98690217-98860245

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Psmd3 11 98682554 to 98695978 13424 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 3
Tssr104769 11 98690524 to 98690538 14 + TSS region transcription start site region 104769
Gm38985 11 98696060 to 98701655 5595 - lncRNA gene predicted gene, 38985
Tssr104770 11 98700165 to 98700206 41 + TSS region transcription start site region 104770
Tssr104771 11 98700332 to 98700370 38 + TSS region transcription start site region 104771
Csf3 11 98701263 to 98703629 2366 + protein coding gene colony stimulating factor 3 (granulocyte)
Tssr104772 11 98701342 to 98701346 4 + TSS region transcription start site region 104772
Med24 11 98704591 to 98729435 24844 - protein coding gene mediator complex subunit 24
Tssr110580 11 98706554 to 98706570 16 - TSS region transcription start site region 110580
Tssr110581 11 98707570 to 98707582 12 - TSS region transcription start site region 110581
Tssr110582 11 98707645 to 98707656 11 - TSS region transcription start site region 110582
Tssr110583 11 98707736 to 98707743 7 - TSS region transcription start site region 110583
Tssr110584 11 98707757 to 98707777 20 - TSS region transcription start site region 110584
Gm22059 11 98710986 to 98711089 103 - snoRNA gene predicted gene, 22059
Gm31252 11 98719271 to 98726857 7586 + pseudogene predicted gene, 31252
Tssr110585 11 98729401 to 98729432 31 - TSS region transcription start site region 110585
Tssr104773 11 98740595 to 98740608 13 + TSS region transcription start site region 104773
Tssr104774 11 98740658 to 98740672 14 + TSS region transcription start site region 104774
Cpgi3766 11 98740711 to 98740979 268 CpG island CpG island 3766
Tssr104775 11 98740889 to 98740952 63 + TSS region transcription start site region 104775
Cpgi3767 11 98741369 to 98742814 1445 CpG island CpG island 3767
Thra 11 98741776 to 98769006 27230 + protein coding gene thyroid hormone receptor alpha
Tssr104776 11 98741805 to 98741816 11 + TSS region transcription start site region 104776
Tssr104777 11 98741846 to 98741857 11 + TSS region transcription start site region 104777
Tssr104778 11 98741871 to 98741894 23 + TSS region transcription start site region 104778
Tssr104779 11 98742127 to 98742147 20 + TSS region transcription start site region 104779
Tssr104780 11 98744203 to 98744225 22 + TSS region transcription start site region 104780
Tssr110586 11 98750506 to 98750528 22 - TSS region transcription start site region 110586
Tssr104781 11 98753021 to 98753035 14 + TSS region transcription start site region 104781
Tssr104782 11 98753383 to 98753393 10 + TSS region transcription start site region 104782
Tssr104783 11 98753512 to 98753531 19 + TSS region transcription start site region 104783
Tssr104784 11 98763505 to 98763529 24 + TSS region transcription start site region 104784
Tssr104785 11 98764972 to 98765022 50 + TSS region transcription start site region 104785
Tssr104786 11 98766258 to 98766277 19 + TSS region transcription start site region 104786
Tssr104787 11 98766314 to 98766347 33 + TSS region transcription start site region 104787
Nr1d1 11 98767932 to 98775333 7401 - protein coding gene nuclear receptor subfamily 1, group D, member 1
Cpgi3768 11 98768215 to 98768728 513 CpG island CpG island 3768
Tssr110587 11 98768224 to 98768237 13 - TSS region transcription start site region 110587
Tssr110588 11 98770317 to 98770353 36 - TSS region transcription start site region 110588
Tssr110589 11 98772120 to 98772132 12 - TSS region transcription start site region 110589
Tssr110590 11 98772951 to 98772971 20 - TSS region transcription start site region 110590
Cpgi3769 11 98773716 to 98774332 616 CpG island CpG island 3769
Tssr110591 11 98773742 to 98773764 22 - TSS region transcription start site region 110591
Tssr110592 11 98774015 to 98774026 11 - TSS region transcription start site region 110592
Tssr110593 11 98774032 to 98774043 11 - TSS region transcription start site region 110593
Tssr110594 11 98775007 to 98775018 11 - TSS region transcription start site region 110594
Tssr110595 11 98775059 to 98775073 14 - TSS region transcription start site region 110595
Tssr110596 11 98775086 to 98775104 18 - TSS region transcription start site region 110596
Cpgi3770 11 98775158 to 98775550 392 CpG island CpG island 3770
Tssr110597 11 98775194 to 98775210 16 - TSS region transcription start site region 110597
Tssr110598 11 98775217 to 98775245 28 - TSS region transcription start site region 110598
Tssr110599 11 98775254 to 98775260 6 - TSS region transcription start site region 110599
Tssr110600 11 98775261 to 98775293 32 - TSS region transcription start site region 110600
Tssr110601 11 98775343 to 98775354 11 - TSS region transcription start site region 110601
Tssr110602 11 98775371 to 98775382 11 - TSS region transcription start site region 110602
Gm31862 11 98775457 to 98783728 8271 + lncRNA gene predicted gene, 31862
Tssr104788 11 98776018 to 98776021 3 + TSS region transcription start site region 104788
Cpgi3771 11 98783383 to 98783643 260 CpG island CpG island 3771
Cpgi3772 11 98789265 to 98789563 298 CpG island CpG island 3772
Cpgi3773 11 98794538 to 98796696 2158 CpG island CpG island 3773
Tssr104789 11 98795171 to 98795209 38 + TSS region transcription start site region 104789
Tssr104790 11 98795237 to 98795254 17 + TSS region transcription start site region 104790
Tssr104791 11 98795469 to 98795483 14 + TSS region transcription start site region 104791
Tssr104792 11 98795495 to 98795574 79 + TSS region transcription start site region 104792
Msl1 11 98795516 to 98807859 12343 + protein coding gene male specific lethal 1
Tssr104793 11 98795821 to 98795840 19 + TSS region transcription start site region 104793
Gm12359 11 98798309 to 98810089 11780 - antisense lncRNA gene predicted gene 12359
Tssr104794 11 98798606 to 98798613 7 + TSS region transcription start site region 104794
Tssr104795 11 98798653 to 98798664 11 + TSS region transcription start site region 104795
Tssr104796 11 98798674 to 98798675 1 + TSS region transcription start site region 104796
Tssr104797 11 98798702 to 98798711 9 + TSS region transcription start site region 104797
Tssr104798 11 98799200 to 98799215 15 + TSS region transcription start site region 104798
Cpgi3774 11 98809494 to 98810429 935 CpG island CpG island 3774
Tssr104799 11 98809787 to 98809810 23 + TSS region transcription start site region 104799
Casc3 11 98809808 to 98833807 23999 + protein coding gene cancer susceptibility candidate 3
Tssr104800 11 98809811 to 98809864 53 + TSS region transcription start site region 104800
Tssr110603 11 98810079 to 98810102 23 - TSS region transcription start site region 110603
Tssr104801 11 98832534 to 98832551 17 + TSS region transcription start site region 104801
Cpgi3775 11 98836588 to 98837612 1024 CpG island CpG island 3775
Tssr104802 11 98836762 to 98836771 9 + TSS region transcription start site region 104802
Tssr104803 11 98836775 to 98836831 56 + TSS region transcription start site region 104803
Rapgefl1 11 98836785 to 98853009 16224 + protein coding gene Rap guanine nucleotide exchange factor (GEF)-like 1
Tssr104804 11 98836836 to 98836859 23 + TSS region transcription start site region 104804
Tssr104805 11 98836867 to 98836878 11 + TSS region transcription start site region 104805
Tssr104806 11 98843798 to 98843800 2 + TSS region transcription start site region 104806
Cpgi3776 11 98845911 to 98846280 369 CpG island CpG island 3776
Cpgi3777 11 98849063 to 98849475 412 CpG island CpG island 3777