Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:98494401-98964432

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198 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ikzf3 11 98464902 to 98546031 81129 - protein coding gene IKAROS family zinc finger 3
Cpgi3760 11 98501343 to 98501516 173 CpG island CpG island 3760
Tssr110560 11 98508812 to 98508833 21 - TSS region transcription start site region 110560
Tssr110561 11 98508873 to 98508888 15 - TSS region transcription start site region 110561
Tssr110562 11 98535672 to 98535676 4 - TSS region transcription start site region 110562
Cpgi3761 11 98545407 to 98546374 967 CpG island CpG island 3761
Tssr104751 11 98545658 to 98545681 23 + TSS region transcription start site region 104751
Tssr110563 11 98545773 to 98545788 15 - TSS region transcription start site region 110563
Tssr110564 11 98545807 to 98545819 12 - TSS region transcription start site region 110564
Tssr110565 11 98545828 to 98545845 17 - TSS region transcription start site region 110565
Tssr110566 11 98545850 to 98545863 13 - TSS region transcription start site region 110566
Tssr110567 11 98545896 to 98545907 11 - TSS region transcription start site region 110567
Tssr110568 11 98545920 to 98545945 25 - TSS region transcription start site region 110568
Tssr110569 11 98545950 to 98545981 31 - TSS region transcription start site region 110569
Tssr110570 11 98545991 to 98546007 16 - TSS region transcription start site region 110570
Tssr110571 11 98546026 to 98546045 19 - TSS region transcription start site region 110571
Tssr110572 11 98546056 to 98546081 25 - TSS region transcription start site region 110572
Tssr110573 11 98546134 to 98546141 7 - TSS region transcription start site region 110573
Tssr110574 11 98546198 to 98546203 5 - TSS region transcription start site region 110574
Tssr110575 11 98546655 to 98546666 11 - TSS region transcription start site region 110575
Cpgi3762 11 98550743 to 98551539 796 CpG island CpG island 3762
Tssr110576 11 98550968 to 98550977 9 - TSS region transcription start site region 110576
Zpbp2 11 98551097 to 98558665 7568 + protein coding gene zona pellucida binding protein 2
Tssr104752 11 98551105 to 98551165 60 + TSS region transcription start site region 104752
Tssr104753 11 98551173 to 98551178 5 + TSS region transcription start site region 104753
Gm38981 11 98563696 to 98568766 5070 - lncRNA gene predicted gene, 38981
Gm31460 11 98575633 to 98581152 5519 + lncRNA gene predicted gene, 31460
Tssr104754 11 98575917 to 98575929 12 + TSS region transcription start site region 104754
Ormdl3 11 98581294 to 98587245 5951 - protein coding gene ORM1-like 3 (S. cerevisiae)
Tssr110577 11 98584246 to 98584281 35 - TSS region transcription start site region 110577
Cpgi3763 11 98586577 to 98587543 966 CpG island CpG island 3763
Tssr110578 11 98587193 to 98587253 60 - TSS region transcription start site region 110578
Lrrc3c 11 98598291 to 98599586 1295 + protein coding gene leucine rich repeat containing 3C
Cpgi3764 11 98598829 to 98599631 802 CpG island CpG island 3764
Gm12355 11 98624368 to 98625662 1294 - protein coding gene predicted gene 12355
Tssr104755 11 98626344 to 98626349 5 + TSS region transcription start site region 104755
Gsdma3 11 98626360 to 98638226 11866 + protein coding gene gasdermin A3
D11Mit264 11 98645606 to 98645724 118 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 264
Tssr104756 11 98646755 to 98646772 17 + TSS region transcription start site region 104756
Gsdma2 11 98646759 to 98657964 11205 + protein coding gene gasdermin A2
Tssr104757 11 98664341 to 98664356 15 + TSS region transcription start site region 104757
Gsdma 11 98664351 to 98677708 13357 + protein coding gene gasdermin A
Tssr104758 11 98664360 to 98664373 13 + TSS region transcription start site region 104758
Tssr104759 11 98664391 to 98664400 9 + TSS region transcription start site region 104759
D11Mit197 11 98678047 to 98678193 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 197
Cpgi3765 11 98682130 to 98683241 1111 CpG island CpG island 3765
Psmd3 11 98682554 to 98695978 13424 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 3
Tssr104760 11 98682558 to 98682573 15 + TSS region transcription start site region 104760
Tssr104761 11 98682578 to 98682612 34 + TSS region transcription start site region 104761
Tssr104762 11 98682613 to 98682624 11 + TSS region transcription start site region 104762
Tssr104763 11 98682788 to 98682818 30 + TSS region transcription start site region 104763
Gm12356 11 98682921 to 98683415 494 - unclassified non-coding RNA gene predicted gene 12356
Tssr110579 11 98683409 to 98683418 9 - TSS region transcription start site region 110579
Skull16 11 98683655 to 98683810 155 QTL skull morphology 16
Crhq1 11 98683655 to 98683810 155 QTL compensatory renal hypertrophy QTL 1
D11Mit14 11 98683655 to 98683810 155 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 14
Tssr104764 11 98685509 to 98685523 14 + TSS region transcription start site region 104764
Tssr104765 11 98685892 to 98685901 9 + TSS region transcription start site region 104765
Tssr104766 11 98685905 to 98685914 9 + TSS region transcription start site region 104766
Tssr104767 11 98685916 to 98685926 10 + TSS region transcription start site region 104767
Tssr104768 11 98686004 to 98686018 14 + TSS region transcription start site region 104768
Tssr104769 11 98690524 to 98690538 14 + TSS region transcription start site region 104769
Gm38985 11 98696060 to 98701655 5595 - lncRNA gene predicted gene, 38985
Tssr104770 11 98700165 to 98700206 41 + TSS region transcription start site region 104770
Tssr104771 11 98700332 to 98700370 38 + TSS region transcription start site region 104771
Csf3 11 98701263 to 98703629 2366 + protein coding gene colony stimulating factor 3 (granulocyte)
Tssr104772 11 98701342 to 98701346 4 + TSS region transcription start site region 104772
Med24 11 98704591 to 98729435 24844 - protein coding gene mediator complex subunit 24
Tssr110580 11 98706554 to 98706570 16 - TSS region transcription start site region 110580
Tssr110581 11 98707570 to 98707582 12 - TSS region transcription start site region 110581
Tssr110582 11 98707645 to 98707656 11 - TSS region transcription start site region 110582
Tssr110583 11 98707736 to 98707743 7 - TSS region transcription start site region 110583
Tssr110584 11 98707757 to 98707777 20 - TSS region transcription start site region 110584
Gm22059 11 98710986 to 98711089 103 - snoRNA gene predicted gene, 22059
Gm31252 11 98719271 to 98726857 7586 + pseudogene predicted gene, 31252
Tssr110585 11 98729401 to 98729432 31 - TSS region transcription start site region 110585
Tssr104773 11 98740595 to 98740608 13 + TSS region transcription start site region 104773
Tssr104774 11 98740658 to 98740672 14 + TSS region transcription start site region 104774
Cpgi3766 11 98740711 to 98740979 268 CpG island CpG island 3766
Tssr104775 11 98740889 to 98740952 63 + TSS region transcription start site region 104775
Cpgi3767 11 98741369 to 98742814 1445 CpG island CpG island 3767
Thra 11 98741776 to 98769006 27230 + protein coding gene thyroid hormone receptor alpha
Tssr104776 11 98741805 to 98741816 11 + TSS region transcription start site region 104776
Tssr104777 11 98741846 to 98741857 11 + TSS region transcription start site region 104777
Tssr104778 11 98741871 to 98741894 23 + TSS region transcription start site region 104778
Tssr104779 11 98742127 to 98742147 20 + TSS region transcription start site region 104779
Tssr104780 11 98744203 to 98744225 22 + TSS region transcription start site region 104780
Tssr110586 11 98750506 to 98750528 22 - TSS region transcription start site region 110586
Tssr104781 11 98753021 to 98753035 14 + TSS region transcription start site region 104781
Tssr104782 11 98753383 to 98753393 10 + TSS region transcription start site region 104782
Tssr104783 11 98753512 to 98753531 19 + TSS region transcription start site region 104783
Tssr104784 11 98763505 to 98763529 24 + TSS region transcription start site region 104784
Tssr104785 11 98764972 to 98765022 50 + TSS region transcription start site region 104785
Tssr104786 11 98766258 to 98766277 19 + TSS region transcription start site region 104786
Tssr104787 11 98766314 to 98766347 33 + TSS region transcription start site region 104787
Nr1d1 11 98767932 to 98775333 7401 - protein coding gene nuclear receptor subfamily 1, group D, member 1
Cpgi3768 11 98768215 to 98768728 513 CpG island CpG island 3768
Tssr110587 11 98768224 to 98768237 13 - TSS region transcription start site region 110587
Tssr110588 11 98770317 to 98770353 36 - TSS region transcription start site region 110588
Tssr110589 11 98772120 to 98772132 12 - TSS region transcription start site region 110589
Tssr110590 11 98772951 to 98772971 20 - TSS region transcription start site region 110590
Cpgi3769 11 98773716 to 98774332 616 CpG island CpG island 3769
Tssr110591 11 98773742 to 98773764 22 - TSS region transcription start site region 110591
Tssr110592 11 98774015 to 98774026 11 - TSS region transcription start site region 110592
Tssr110593 11 98774032 to 98774043 11 - TSS region transcription start site region 110593
Tssr110594 11 98775007 to 98775018 11 - TSS region transcription start site region 110594
Tssr110595 11 98775059 to 98775073 14 - TSS region transcription start site region 110595
Tssr110596 11 98775086 to 98775104 18 - TSS region transcription start site region 110596
Cpgi3770 11 98775158 to 98775550 392 CpG island CpG island 3770
Tssr110597 11 98775194 to 98775210 16 - TSS region transcription start site region 110597
Tssr110598 11 98775217 to 98775245 28 - TSS region transcription start site region 110598
Tssr110599 11 98775254 to 98775260 6 - TSS region transcription start site region 110599
Tssr110600 11 98775261 to 98775293 32 - TSS region transcription start site region 110600
Tssr110601 11 98775343 to 98775354 11 - TSS region transcription start site region 110601
Tssr110602 11 98775371 to 98775382 11 - TSS region transcription start site region 110602
Gm31862 11 98775457 to 98783728 8271 + lncRNA gene predicted gene, 31862
Tssr104788 11 98776018 to 98776021 3 + TSS region transcription start site region 104788
Cpgi3771 11 98783383 to 98783643 260 CpG island CpG island 3771
Cpgi3772 11 98789265 to 98789563 298 CpG island CpG island 3772
Cpgi3773 11 98794538 to 98796696 2158 CpG island CpG island 3773
Tssr104789 11 98795171 to 98795209 38 + TSS region transcription start site region 104789
Tssr104790 11 98795237 to 98795254 17 + TSS region transcription start site region 104790
Tssr104791 11 98795469 to 98795483 14 + TSS region transcription start site region 104791
Tssr104792 11 98795495 to 98795574 79 + TSS region transcription start site region 104792
Msl1 11 98795516 to 98807859 12343 + protein coding gene male specific lethal 1
Tssr104793 11 98795821 to 98795840 19 + TSS region transcription start site region 104793
Gm12359 11 98798309 to 98810089 11780 - antisense lncRNA gene predicted gene 12359
Tssr104794 11 98798606 to 98798613 7 + TSS region transcription start site region 104794
Tssr104795 11 98798653 to 98798664 11 + TSS region transcription start site region 104795
Tssr104796 11 98798674 to 98798675 1 + TSS region transcription start site region 104796
Tssr104797 11 98798702 to 98798711 9 + TSS region transcription start site region 104797
Tssr104798 11 98799200 to 98799215 15 + TSS region transcription start site region 104798
Cpgi3774 11 98809494 to 98810429 935 CpG island CpG island 3774
Tssr104799 11 98809787 to 98809810 23 + TSS region transcription start site region 104799
Casc3 11 98809808 to 98833807 23999 + protein coding gene cancer susceptibility candidate 3
Tssr104800 11 98809811 to 98809864 53 + TSS region transcription start site region 104800
Tssr110603 11 98810079 to 98810102 23 - TSS region transcription start site region 110603
Tssr104801 11 98832534 to 98832551 17 + TSS region transcription start site region 104801
Cpgi3775 11 98836588 to 98837612 1024 CpG island CpG island 3775
Tssr104802 11 98836762 to 98836771 9 + TSS region transcription start site region 104802
Tssr104803 11 98836775 to 98836831 56 + TSS region transcription start site region 104803
Rapgefl1 11 98836785 to 98853009 16224 + protein coding gene Rap guanine nucleotide exchange factor (GEF)-like 1
Tssr104804 11 98836836 to 98836859 23 + TSS region transcription start site region 104804
Tssr104805 11 98836867 to 98836878 11 + TSS region transcription start site region 104805
Tssr104806 11 98843798 to 98843800 2 + TSS region transcription start site region 104806
Cpgi3776 11 98845911 to 98846280 369 CpG island CpG island 3776
Cpgi3777 11 98849063 to 98849475 412 CpG island CpG island 3777
Cpgi3778 11 98863337 to 98864524 1187 CpG island CpG island 3778
Tssr104807 11 98863610 to 98863646 36 + TSS region transcription start site region 104807
Wipf2 11 98863638 to 98905040 41402 + protein coding gene WAS/WASL interacting protein family, member 2
Tssr104808 11 98863655 to 98863690 35 + TSS region transcription start site region 104808
Tssr104809 11 98863755 to 98863785 30 + TSS region transcription start site region 104809
Gm23640 11 98870396 to 98870499 103 - snRNA gene predicted gene, 23640
Tssr104810 11 98891183 to 98891201 18 + TSS region transcription start site region 104810
Tssr104811 11 98903201 to 98903214 13 + TSS region transcription start site region 104811
Cpgi3779 11 98907489 to 98908217 728 CpG island CpG island 3779
Cdc6 11 98907801 to 98923940 16139 + protein coding gene cell division cycle 6
Tssr104812 11 98907810 to 98907824 14 + TSS region transcription start site region 104812
Tssr104813 11 98907827 to 98907866 39 + TSS region transcription start site region 104813
Tssr104814 11 98918661 to 98918690 29 + TSS region transcription start site region 104814
Carg4 11 98919441 to 98919441 0 QTL Candida albicans resistance gene 4
Cpgi3780 11 98927682 to 98928232 550 CpG island CpG island 3780
Tssr104815 11 98927785 to 98927810 25 + TSS region transcription start site region 104815
Tssr3664 11 98927814 to 98927824 10 + TSS region transcription start site region 3664
Rara 11 98927818 to 98974942 47124 + protein coding gene retinoic acid receptor, alpha
Tssr104816 11 98927826 to 98927854 28 + TSS region transcription start site region 104816
Cpgi3781 11 98936159 to 98936674 515 CpG island CpG island 3781
Tssr104817 11 98937153 to 98937170 17 + TSS region transcription start site region 104817
Gm46294 11 98937275 to 98942287 5012 - protein coding gene predicted gene, 46294
Cpgi3782 11 98937286 to 98938404 1118 CpG island CpG island 3782
Tssr104818 11 98937669 to 98937735 66 + TSS region transcription start site region 104818
Tssr104819 11 98938376 to 98938387 11 + TSS region transcription start site region 104819
Tssr110604 11 98939610 to 98939623 13 - TSS region transcription start site region 110604
Tssr110605 11 98939649 to 98939679 30 - TSS region transcription start site region 110605
Tssr104820 11 98939898 to 98939910 12 + TSS region transcription start site region 104820
Tssr104821 11 98939914 to 98939944 30 + TSS region transcription start site region 104821
Tssr110606 11 98941907 to 98941932 25 - TSS region transcription start site region 110606
Tssr104822 11 98942387 to 98942396 9 + TSS region transcription start site region 104822
Tssr104823 11 98942487 to 98942499 12 + TSS region transcription start site region 104823
Tssr104824 11 98943473 to 98943505 32 + TSS region transcription start site region 104824
Tssr104825 11 98944199 to 98944243 44 + TSS region transcription start site region 104825
Tssr104826 11 98944426 to 98944457 31 + TSS region transcription start site region 104826
Gm22061 11 98946444 to 98946550 106 + snRNA gene predicted gene, 22061
Cpgi3783 11 98947977 to 98948226 249 CpG island CpG island 3783
Cpgi3784 11 98959519 to 98961334 1815 CpG island CpG island 3784
Tssr110607 11 98959523 to 98959527 4 - TSS region transcription start site region 110607
Tssr104827 11 98959756 to 98959771 15 + TSS region transcription start site region 104827
Tssr104828 11 98959782 to 98959801 19 + TSS region transcription start site region 104828
Tssr104829 11 98960435 to 98960485 50 + TSS region transcription start site region 104829
Tssr104830 11 98960544 to 98960593 49 + TSS region transcription start site region 104830
Tssr104831 11 98960603 to 98960620 17 + TSS region transcription start site region 104831
Tssr104832 11 98960623 to 98960673 50 + TSS region transcription start site region 104832
Tssr104833 11 98960733 to 98960758 25 + TSS region transcription start site region 104833
Tssr104834 11 98960767 to 98960778 11 + TSS region transcription start site region 104834
Tssr104835 11 98960779 to 98960790 11 + TSS region transcription start site region 104835
Tssr110608 11 98961528 to 98961549 21 - TSS region transcription start site region 110608
Cpgi3785 11 98963500 to 98963916 416 CpG island CpG island 3785
nmf148 11 109328475 to 98683655 -10644820 heritable phenotypic marker neuroscience mutagenesis facility, 148