Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:98455407-98636374

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38975 11 98447515 to 98459816 12301 - lncRNA gene predicted gene, 38975
Cpgi3759 11 98457377 to 98458542 1165 CpG island CpG island 3759
Tssr110539 11 98457998 to 98458019 21 - TSS region transcription start site region 110539
Tssr104746 11 98458003 to 98458009 6 + TSS region transcription start site region 104746
Tssr104747 11 98458297 to 98458307 10 + TSS region transcription start site region 104747
Tssr110540 11 98463382 to 98463391 9 - TSS region transcription start site region 110540
Tssr110541 11 98463421 to 98463432 11 - TSS region transcription start site region 110541
Tssr110542 11 98463435 to 98463458 23 - TSS region transcription start site region 110542
Tssr110543 11 98463479 to 98463486 7 - TSS region transcription start site region 110543
Tssr110544 11 98463600 to 98463605 5 - TSS region transcription start site region 110544
Tssr110545 11 98463619 to 98463626 7 - TSS region transcription start site region 110545
Tssr110546 11 98463630 to 98463683 53 - TSS region transcription start site region 110546
Tssr110547 11 98463684 to 98463769 85 - TSS region transcription start site region 110547
Tssr110548 11 98463776 to 98463798 22 - TSS region transcription start site region 110548
Tssr110549 11 98463821 to 98463832 11 - TSS region transcription start site region 110549
Tssr110550 11 98463841 to 98463850 9 - TSS region transcription start site region 110550
Tssr110551 11 98463894 to 98463905 11 - TSS region transcription start site region 110551
Ikzf3 11 98464902 to 98546031 81129 - protein coding gene IKAROS family zinc finger 3
Tssr104748 11 98470490 to 98470506 16 + TSS region transcription start site region 104748
Tssr104749 11 98470535 to 98470554 19 + TSS region transcription start site region 104749
Gm25106 11 98473675 to 98473808 133 - snRNA gene predicted gene, 25106
Tssr110552 11 98473803 to 98473807 4 - TSS region transcription start site region 110552
Tssr110553 11 98477121 to 98477152 31 - TSS region transcription start site region 110553
Tssr110554 11 98477209 to 98477214 5 - TSS region transcription start site region 110554
Tssr110555 11 98477241 to 98477254 13 - TSS region transcription start site region 110555
Tssr110556 11 98477383 to 98477395 12 - TSS region transcription start site region 110556
Tssr110557 11 98477397 to 98477419 22 - TSS region transcription start site region 110557
Tssr110558 11 98479451 to 98479460 9 - TSS region transcription start site region 110558
Tssr110559 11 98479516 to 98479519 3 - TSS region transcription start site region 110559
Tssr104750 11 98493108 to 98493111 3 + TSS region transcription start site region 104750
Cpgi3760 11 98501343 to 98501516 173 CpG island CpG island 3760
Tssr110560 11 98508812 to 98508833 21 - TSS region transcription start site region 110560
Tssr110561 11 98508873 to 98508888 15 - TSS region transcription start site region 110561
Tssr110562 11 98535672 to 98535676 4 - TSS region transcription start site region 110562
Cpgi3761 11 98545407 to 98546374 967 CpG island CpG island 3761
Tssr104751 11 98545658 to 98545681 23 + TSS region transcription start site region 104751
Tssr110563 11 98545773 to 98545788 15 - TSS region transcription start site region 110563
Tssr110564 11 98545807 to 98545819 12 - TSS region transcription start site region 110564
Tssr110565 11 98545828 to 98545845 17 - TSS region transcription start site region 110565
Tssr110566 11 98545850 to 98545863 13 - TSS region transcription start site region 110566
Tssr110567 11 98545896 to 98545907 11 - TSS region transcription start site region 110567
Tssr110568 11 98545920 to 98545945 25 - TSS region transcription start site region 110568
Tssr110569 11 98545950 to 98545981 31 - TSS region transcription start site region 110569
Tssr110570 11 98545991 to 98546007 16 - TSS region transcription start site region 110570
Tssr110571 11 98546026 to 98546045 19 - TSS region transcription start site region 110571
Tssr110572 11 98546056 to 98546081 25 - TSS region transcription start site region 110572
Tssr110573 11 98546134 to 98546141 7 - TSS region transcription start site region 110573
Tssr110574 11 98546198 to 98546203 5 - TSS region transcription start site region 110574
Tssr110575 11 98546655 to 98546666 11 - TSS region transcription start site region 110575
Cpgi3762 11 98550743 to 98551539 796 CpG island CpG island 3762
Tssr110576 11 98550968 to 98550977 9 - TSS region transcription start site region 110576
Zpbp2 11 98551097 to 98558665 7568 + protein coding gene zona pellucida binding protein 2
Tssr104752 11 98551105 to 98551165 60 + TSS region transcription start site region 104752
Tssr104753 11 98551173 to 98551178 5 + TSS region transcription start site region 104753
Gm38981 11 98563696 to 98568766 5070 - lncRNA gene predicted gene, 38981
Gm31460 11 98575633 to 98581152 5519 + lncRNA gene predicted gene, 31460
Tssr104754 11 98575917 to 98575929 12 + TSS region transcription start site region 104754
Ormdl3 11 98581294 to 98587245 5951 - protein coding gene ORM1-like 3 (S. cerevisiae)
Tssr110577 11 98584246 to 98584281 35 - TSS region transcription start site region 110577
Cpgi3763 11 98586577 to 98587543 966 CpG island CpG island 3763
Tssr110578 11 98587193 to 98587253 60 - TSS region transcription start site region 110578
Lrrc3c 11 98598291 to 98599586 1295 + protein coding gene leucine rich repeat containing 3C
Cpgi3764 11 98598829 to 98599631 802 CpG island CpG island 3764
Gm12355 11 98624368 to 98625662 1294 - protein coding gene predicted gene 12355
Tssr104755 11 98626344 to 98626349 5 + TSS region transcription start site region 104755
Gsdma3 11 98626360 to 98638226 11866 + protein coding gene gasdermin A3