Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:98241060-98411082

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdk12 11 98203059 to 98278504 75445 + protein coding gene cyclin-dependent kinase 12
Tssr104710 11 98248315 to 98248321 6 + TSS region transcription start site region 104710
Tssr104711 11 98253073 to 98253078 5 + TSS region transcription start site region 104711
Mir5119 11 98262606 to 98262662 56 + miRNA gene microRNA 5119
n-R5s73 11 98273260 to 98273366 106 - rRNA gene nuclear encoded rRNA 5S 73
D11Ingm46 11 98274865 to 98274980 115 DNA segment DNA segment, Chr 11, Ingenium Pharmaceuticals 46
Gm20644 11 98285382 to 98287444 2062 + sense overlapping lncRNA gene predicted gene 20644
Gm31194 11 98293443 to 98296615 3172 + lncRNA gene predicted gene, 31194
Tssr104712 11 98294256 to 98294261 5 + TSS region transcription start site region 104712
Cpgi3744 11 98294273 to 98295271 998 CpG island CpG island 3744
Gm31317 11 98298777 to 98314135 15358 - lncRNA gene predicted gene, 31317
Cpgi3745 11 98313916 to 98314132 216 CpG island CpG island 3745
Cpgi3746 11 98319208 to 98319377 169 CpG island CpG island 3746
Tssr110519 11 98321281 to 98321284 3 - TSS region transcription start site region 110519
Cpgi3747 11 98325399 to 98325570 171 CpG island CpG island 3747
Neurod2 11 98325417 to 98329645 4228 - protein coding gene neurogenic differentiation 2
Cpgi3748 11 98325829 to 98326162 333 CpG island CpG island 3748
Tssr110520 11 98326060 to 98326082 22 - TSS region transcription start site region 110520
Tssr110521 11 98326186 to 98326198 12 - TSS region transcription start site region 110521
Tssr110522 11 98326202 to 98326211 9 - TSS region transcription start site region 110522
Tssr104713 11 98326302 to 98326312 10 + TSS region transcription start site region 104713
Tssr110523 11 98326451 to 98326460 9 - TSS region transcription start site region 110523
Tssr110524 11 98326691 to 98326702 11 - TSS region transcription start site region 110524
Cpgi3749 11 98326845 to 98329765 2920 CpG island CpG island 3749
Tssr110525 11 98326964 to 98327011 47 - TSS region transcription start site region 110525
Tssr110526 11 98328172 to 98328199 27 - TSS region transcription start site region 110526
Tssr110527 11 98328343 to 98328357 14 - TSS region transcription start site region 110527
Tssr110528 11 98329604 to 98329637 33 - TSS region transcription start site region 110528
Tssr110529 11 98329641 to 98329654 13 - TSS region transcription start site region 110529
Cpgi3750 11 98334080 to 98334852 772 CpG island CpG island 3750
Gm33099 11 98334454 to 98340908 6454 + protein coding gene predicted gene, 33099
Cpgi3751 11 98338373 to 98339660 1287 CpG island CpG island 3751
Gm38970 11 98342122 to 98343859 1737 + lncRNA gene predicted gene, 38970
Cpgi3752 11 98342658 to 98343090 432 CpG island CpG island 3752
Cpgi3753 11 98348105 to 98349469 1364 CpG island CpG island 3753
Ppp1r1b 11 98348406 to 98357796 9390 + protein coding gene protein phosphatase 1, regulatory inhibitor subunit 1B
Tssr104714 11 98348428 to 98348434 6 + TSS region transcription start site region 104714
Tssr104715 11 98348466 to 98348473 7 + TSS region transcription start site region 104715
Tssr104716 11 98348638 to 98348641 3 + TSS region transcription start site region 104716
Tssr104717 11 98348662 to 98348742 80 + TSS region transcription start site region 104717
Tssr104718 11 98348752 to 98348763 11 + TSS region transcription start site region 104718
Tssr104719 11 98348764 to 98348779 15 + TSS region transcription start site region 104719
Tssr104720 11 98349053 to 98349069 16 + TSS region transcription start site region 104720
Tssr104721 11 98350443 to 98350453 10 + TSS region transcription start site region 104721
1700003D09Rik 11 98350718 to 98358283 7565 - lncRNA gene RIKEN cDNA 1700003D09 gene
Tssr104722 11 98355309 to 98355320 11 + TSS region transcription start site region 104722
Tssr104723 11 98355322 to 98355330 8 + TSS region transcription start site region 104723
Tssr104724 11 98355335 to 98355346 11 + TSS region transcription start site region 104724
Tssr104725 11 98355349 to 98355362 13 + TSS region transcription start site region 104725
Tssr104726 11 98356712 to 98356726 14 + TSS region transcription start site region 104726
Tssr104727 11 98356727 to 98356738 11 + TSS region transcription start site region 104727
Tssr104728 11 98357038 to 98357079 41 + TSS region transcription start site region 104728
Cpgi3754 11 98358234 to 98358834 600 CpG island CpG island 3754
Tssr110530 11 98358236 to 98358253 17 - TSS region transcription start site region 110530
Stard3 11 98358368 to 98381112 22744 + protein coding gene START domain containing 3
Tssr104729 11 98358384 to 98358400 16 + TSS region transcription start site region 104729
Tssr104730 11 98358402 to 98358457 55 + TSS region transcription start site region 104730
Tssr104731 11 98358685 to 98358725 40 + TSS region transcription start site region 104731
Tssr110531 11 98359465 to 98359476 11 - TSS region transcription start site region 110531
Tssr104732 11 98371792 to 98371811 19 + TSS region transcription start site region 104732
Tssr104733 11 98371974 to 98371985 11 + TSS region transcription start site region 104733
Tssr104734 11 98377979 to 98377990 11 + TSS region transcription start site region 104734
Tcap 11 98383811 to 98384953 1142 + protein coding gene titin-cap
Tssr104735 11 98383816 to 98383832 16 + TSS region transcription start site region 104735
Tssr110532 11 98384797 to 98384812 15 - TSS region transcription start site region 110532
Cpgi3755 11 98386423 to 98387006 583 CpG island CpG island 3755
Tssr104736 11 98386616 to 98386633 17 + TSS region transcription start site region 104736
Pnmt 11 98386632 to 98388097 1465 + protein coding gene phenylethanolamine-N-methyltransferase
Pgap3 11 98388677 to 98400490 11813 - protein coding gene post-GPI attachment to proteins 3
Tssr110533 11 98399594 to 98399625 31 - TSS region transcription start site region 110533
Cpgi3756 11 98400113 to 98400643 530 CpG island CpG island 3756
Tssr110534 11 98400393 to 98400446 53 - TSS region transcription start site region 110534
Tssr110535 11 98400453 to 98400474 21 - TSS region transcription start site region 110535
Tssr104737 11 98400537 to 98400562 25 + TSS region transcription start site region 104737