Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:98183073-98323078

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Med1 11 98152154 to 98193293 41139 - protein coding gene mediator complex subunit 1
Tssr104703 11 98185310 to 98185330 20 + TSS region transcription start site region 104703
Gm11604 11 98185366 to 98186107 741 + pseudogene predicted gene 11604
Cpgi3742 11 98192691 to 98193553 862 CpG island CpG island 3742
Tssr110517 11 98193267 to 98193298 31 - TSS region transcription start site region 110517
Gm38963 11 98193930 to 98202596 8666 - lncRNA gene predicted gene, 38963
Cpgi3743 11 98202577 to 98203983 1406 CpG island CpG island 3743
Tssr104704 11 98202738 to 98202749 11 + TSS region transcription start site region 104704
Tssr104705 11 98202758 to 98202801 43 + TSS region transcription start site region 104705
Tssr104706 11 98202815 to 98202820 5 + TSS region transcription start site region 104706
Cdk12 11 98203059 to 98278504 75445 + protein coding gene cyclin-dependent kinase 12
Tssr110518 11 98203158 to 98203173 15 - TSS region transcription start site region 110518
Tssr104707 11 98203307 to 98203348 41 + TSS region transcription start site region 104707
Tssr104708 11 98210796 to 98210828 32 + TSS region transcription start site region 104708
Tssr104709 11 98217206 to 98217212 6 + TSS region transcription start site region 104709
Gm27399 11 98238618 to 98238695 77 + miRNA gene predicted gene, 27399
Tssr104710 11 98248315 to 98248321 6 + TSS region transcription start site region 104710
Tssr104711 11 98253073 to 98253078 5 + TSS region transcription start site region 104711
Mir5119 11 98262606 to 98262662 56 + miRNA gene microRNA 5119
n-R5s73 11 98273260 to 98273366 106 - rRNA gene nuclear encoded rRNA 5S 73
D11Ingm46 11 98274865 to 98274980 115 DNA segment DNA segment, Chr 11, Ingenium Pharmaceuticals 46
Gm20644 11 98285382 to 98287444 2062 + sense overlapping lncRNA gene predicted gene 20644
Gm31194 11 98293443 to 98296615 3172 + lncRNA gene predicted gene, 31194
Tssr104712 11 98294256 to 98294261 5 + TSS region transcription start site region 104712
Cpgi3744 11 98294273 to 98295271 998 CpG island CpG island 3744
Gm31317 11 98298777 to 98314135 15358 - lncRNA gene predicted gene, 31317
Cpgi3745 11 98313916 to 98314132 216 CpG island CpG island 3745
Cpgi3746 11 98319208 to 98319377 169 CpG island CpG island 3746
Tssr110519 11 98321281 to 98321284 3 - TSS region transcription start site region 110519