Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:98048916-98579132

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182 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stac2 11 98036623 to 98053462 16839 - protein coding gene SH3 and cysteine rich domain 2
Tssr110506 11 98051720 to 98051732 12 - TSS region transcription start site region 110506
Cpgi3740 11 98052148 to 98053571 1423 CpG island CpG island 3740
Tssr110507 11 98052987 to 98053029 42 - TSS region transcription start site region 110507
Tssr110508 11 98053243 to 98053261 18 - TSS region transcription start site region 110508
Tssr110509 11 98053278 to 98053291 13 - TSS region transcription start site region 110509
Tssr110510 11 98053296 to 98053337 41 - TSS region transcription start site region 110510
Tssr110511 11 98053341 to 98053362 21 - TSS region transcription start site region 110511
Tssr110512 11 98053415 to 98053467 52 - TSS region transcription start site region 110512
Tssr104702 11 98058276 to 98058307 31 + TSS region transcription start site region 104702
Gm11631 11 98063888 to 98064043 155 + pseudogene predicted gene 11631
Fbxl20 11 98082556 to 98150403 67847 - protein coding gene F-box and leucine-rich repeat protein 20
Gm11632 11 98084457 to 98085424 967 - unclassified non-coding RNA gene predicted gene 11632
Tssr110513 11 98101507 to 98101520 13 - TSS region transcription start site region 110513
Cpgi3741 11 98148850 to 98150685 1835 CpG island CpG island 3741
Tssr110514 11 98149551 to 98149621 70 - TSS region transcription start site region 110514
Med1 11 98152154 to 98193293 41139 - protein coding gene mediator complex subunit 1
Tssr110515 11 98153560 to 98153570 10 - TSS region transcription start site region 110515
Tssr110516 11 98179974 to 98180019 45 - TSS region transcription start site region 110516
Tssr104703 11 98185310 to 98185330 20 + TSS region transcription start site region 104703
Gm11604 11 98185366 to 98186107 741 + pseudogene predicted gene 11604
Cpgi3742 11 98192691 to 98193553 862 CpG island CpG island 3742
Tssr110517 11 98193267 to 98193298 31 - TSS region transcription start site region 110517
Gm38963 11 98193930 to 98202596 8666 - lncRNA gene predicted gene, 38963
Cpgi3743 11 98202577 to 98203983 1406 CpG island CpG island 3743
Tssr104704 11 98202738 to 98202749 11 + TSS region transcription start site region 104704
Tssr104705 11 98202758 to 98202801 43 + TSS region transcription start site region 104705
Tssr104706 11 98202815 to 98202820 5 + TSS region transcription start site region 104706
Cdk12 11 98203059 to 98278504 75445 + protein coding gene cyclin-dependent kinase 12
Tssr110518 11 98203158 to 98203173 15 - TSS region transcription start site region 110518
Tssr104707 11 98203307 to 98203348 41 + TSS region transcription start site region 104707
Tssr104708 11 98210796 to 98210828 32 + TSS region transcription start site region 104708
Tssr104709 11 98217206 to 98217212 6 + TSS region transcription start site region 104709
Gm27399 11 98238618 to 98238695 77 + miRNA gene predicted gene, 27399
Tssr104710 11 98248315 to 98248321 6 + TSS region transcription start site region 104710
Tssr104711 11 98253073 to 98253078 5 + TSS region transcription start site region 104711
Mir5119 11 98262606 to 98262662 56 + miRNA gene microRNA 5119
n-R5s73 11 98273260 to 98273366 106 - rRNA gene nuclear encoded rRNA 5S 73
D11Ingm46 11 98274865 to 98274980 115 DNA segment DNA segment, Chr 11, Ingenium Pharmaceuticals 46
Gm20644 11 98285382 to 98287444 2062 + sense overlapping lncRNA gene predicted gene 20644
Gm31194 11 98293443 to 98296615 3172 + lncRNA gene predicted gene, 31194
Tssr104712 11 98294256 to 98294261 5 + TSS region transcription start site region 104712
Cpgi3744 11 98294273 to 98295271 998 CpG island CpG island 3744
Gm31317 11 98298777 to 98314135 15358 - lncRNA gene predicted gene, 31317
Cpgi3745 11 98313916 to 98314132 216 CpG island CpG island 3745
Cpgi3746 11 98319208 to 98319377 169 CpG island CpG island 3746
Tssr110519 11 98321281 to 98321284 3 - TSS region transcription start site region 110519
Cpgi3747 11 98325399 to 98325570 171 CpG island CpG island 3747
Neurod2 11 98325417 to 98329645 4228 - protein coding gene neurogenic differentiation 2
Cpgi3748 11 98325829 to 98326162 333 CpG island CpG island 3748
Tssr110520 11 98326060 to 98326082 22 - TSS region transcription start site region 110520
Tssr110521 11 98326186 to 98326198 12 - TSS region transcription start site region 110521
Tssr110522 11 98326202 to 98326211 9 - TSS region transcription start site region 110522
Tssr104713 11 98326302 to 98326312 10 + TSS region transcription start site region 104713
Tssr110523 11 98326451 to 98326460 9 - TSS region transcription start site region 110523
Tssr110524 11 98326691 to 98326702 11 - TSS region transcription start site region 110524
Cpgi3749 11 98326845 to 98329765 2920 CpG island CpG island 3749
Tssr110525 11 98326964 to 98327011 47 - TSS region transcription start site region 110525
Tssr110526 11 98328172 to 98328199 27 - TSS region transcription start site region 110526
Tssr110527 11 98328343 to 98328357 14 - TSS region transcription start site region 110527
Tssr110528 11 98329604 to 98329637 33 - TSS region transcription start site region 110528
Tssr110529 11 98329641 to 98329654 13 - TSS region transcription start site region 110529
Cpgi3750 11 98334080 to 98334852 772 CpG island CpG island 3750
Gm33099 11 98334454 to 98340908 6454 + protein coding gene predicted gene, 33099
Cpgi3751 11 98338373 to 98339660 1287 CpG island CpG island 3751
Gm38970 11 98342122 to 98343859 1737 + lncRNA gene predicted gene, 38970
Cpgi3752 11 98342658 to 98343090 432 CpG island CpG island 3752
Cpgi3753 11 98348105 to 98349469 1364 CpG island CpG island 3753
Ppp1r1b 11 98348406 to 98357796 9390 + protein coding gene protein phosphatase 1, regulatory inhibitor subunit 1B
Tssr104714 11 98348428 to 98348434 6 + TSS region transcription start site region 104714
Tssr104715 11 98348466 to 98348473 7 + TSS region transcription start site region 104715
Tssr104716 11 98348638 to 98348641 3 + TSS region transcription start site region 104716
Tssr104717 11 98348662 to 98348742 80 + TSS region transcription start site region 104717
Tssr104718 11 98348752 to 98348763 11 + TSS region transcription start site region 104718
Tssr104719 11 98348764 to 98348779 15 + TSS region transcription start site region 104719
Tssr104720 11 98349053 to 98349069 16 + TSS region transcription start site region 104720
Tssr104721 11 98350443 to 98350453 10 + TSS region transcription start site region 104721
1700003D09Rik 11 98350718 to 98358283 7565 - lncRNA gene RIKEN cDNA 1700003D09 gene
Tssr104722 11 98355309 to 98355320 11 + TSS region transcription start site region 104722
Tssr104723 11 98355322 to 98355330 8 + TSS region transcription start site region 104723
Tssr104724 11 98355335 to 98355346 11 + TSS region transcription start site region 104724
Tssr104725 11 98355349 to 98355362 13 + TSS region transcription start site region 104725
Tssr104726 11 98356712 to 98356726 14 + TSS region transcription start site region 104726
Tssr104727 11 98356727 to 98356738 11 + TSS region transcription start site region 104727
Tssr104728 11 98357038 to 98357079 41 + TSS region transcription start site region 104728
Cpgi3754 11 98358234 to 98358834 600 CpG island CpG island 3754
Tssr110530 11 98358236 to 98358253 17 - TSS region transcription start site region 110530
Stard3 11 98358368 to 98381112 22744 + protein coding gene START domain containing 3
Tssr104729 11 98358384 to 98358400 16 + TSS region transcription start site region 104729
Tssr104730 11 98358402 to 98358457 55 + TSS region transcription start site region 104730
Tssr104731 11 98358685 to 98358725 40 + TSS region transcription start site region 104731
Tssr110531 11 98359465 to 98359476 11 - TSS region transcription start site region 110531
Tssr104732 11 98371792 to 98371811 19 + TSS region transcription start site region 104732
Tssr104733 11 98371974 to 98371985 11 + TSS region transcription start site region 104733
Tssr104734 11 98377979 to 98377990 11 + TSS region transcription start site region 104734
Tcap 11 98383811 to 98384953 1142 + protein coding gene titin-cap
Tssr104735 11 98383816 to 98383832 16 + TSS region transcription start site region 104735
Tssr110532 11 98384797 to 98384812 15 - TSS region transcription start site region 110532
Cpgi3755 11 98386423 to 98387006 583 CpG island CpG island 3755
Tssr104736 11 98386616 to 98386633 17 + TSS region transcription start site region 104736
Pnmt 11 98386632 to 98388097 1465 + protein coding gene phenylethanolamine-N-methyltransferase
Pgap3 11 98388677 to 98400490 11813 - protein coding gene post-GPI attachment to proteins 3
Tssr110533 11 98399594 to 98399625 31 - TSS region transcription start site region 110533
Cpgi3756 11 98400113 to 98400643 530 CpG island CpG island 3756
Tssr110534 11 98400393 to 98400446 53 - TSS region transcription start site region 110534
Tssr110535 11 98400453 to 98400474 21 - TSS region transcription start site region 110535
Tssr104737 11 98400537 to 98400562 25 + TSS region transcription start site region 104737
Cpgi3757 11 98412237 to 98413380 1143 CpG island CpG island 3757
Tssr104738 11 98412376 to 98412388 12 + TSS region transcription start site region 104738
Tssr104739 11 98412461 to 98412566 105 + TSS region transcription start site region 104739
Erbb2 11 98412484 to 98437716 25232 + protein coding gene erb-b2 receptor tyrosine kinase 2
Gm25048 11 98423290 to 98423380 90 - snRNA gene predicted gene, 25048
Mien1 11 98437708 to 98438988 1280 - protein coding gene migration and invasion enhancer 1
Gm12352 11 98438037 to 98439046 1009 + antisense lncRNA gene predicted gene 12352
Cpgi3758 11 98438478 to 98439195 717 CpG island CpG island 3758
Tssr110536 11 98438708 to 98438776 68 - TSS region transcription start site region 110536
Tssr110537 11 98438941 to 98439008 67 - TSS region transcription start site region 110537
Tssr110538 11 98443961 to 98443966 5 - TSS region transcription start site region 110538
Tssr104740 11 98446826 to 98446869 43 + TSS region transcription start site region 104740
Grb7 11 98446834 to 98455373 8539 + protein coding gene growth factor receptor bound protein 7
Tssr104741 11 98447013 to 98447062 49 + TSS region transcription start site region 104741
Tssr104742 11 98447064 to 98447082 18 + TSS region transcription start site region 104742
Tssr104743 11 98447088 to 98447100 12 + TSS region transcription start site region 104743
Tssr104744 11 98447117 to 98447126 9 + TSS region transcription start site region 104744
Gm38975 11 98447515 to 98459816 12301 - lncRNA gene predicted gene, 38975
Tssr104745 11 98451833 to 98451839 6 + TSS region transcription start site region 104745
Cpgi3759 11 98457377 to 98458542 1165 CpG island CpG island 3759
Tssr110539 11 98457998 to 98458019 21 - TSS region transcription start site region 110539
Tssr104746 11 98458003 to 98458009 6 + TSS region transcription start site region 104746
Tssr104747 11 98458297 to 98458307 10 + TSS region transcription start site region 104747
Tssr110540 11 98463382 to 98463391 9 - TSS region transcription start site region 110540
Tssr110541 11 98463421 to 98463432 11 - TSS region transcription start site region 110541
Tssr110542 11 98463435 to 98463458 23 - TSS region transcription start site region 110542
Tssr110543 11 98463479 to 98463486 7 - TSS region transcription start site region 110543
Tssr110544 11 98463600 to 98463605 5 - TSS region transcription start site region 110544
Tssr110545 11 98463619 to 98463626 7 - TSS region transcription start site region 110545
Tssr110546 11 98463630 to 98463683 53 - TSS region transcription start site region 110546
Tssr110547 11 98463684 to 98463769 85 - TSS region transcription start site region 110547
Tssr110548 11 98463776 to 98463798 22 - TSS region transcription start site region 110548
Tssr110549 11 98463821 to 98463832 11 - TSS region transcription start site region 110549
Tssr110550 11 98463841 to 98463850 9 - TSS region transcription start site region 110550
Tssr110551 11 98463894 to 98463905 11 - TSS region transcription start site region 110551
Ikzf3 11 98464902 to 98546031 81129 - protein coding gene IKAROS family zinc finger 3
Tssr104748 11 98470490 to 98470506 16 + TSS region transcription start site region 104748
Tssr104749 11 98470535 to 98470554 19 + TSS region transcription start site region 104749
Gm25106 11 98473675 to 98473808 133 - snRNA gene predicted gene, 25106
Tssr110552 11 98473803 to 98473807 4 - TSS region transcription start site region 110552
Tssr110553 11 98477121 to 98477152 31 - TSS region transcription start site region 110553
Tssr110554 11 98477209 to 98477214 5 - TSS region transcription start site region 110554
Tssr110555 11 98477241 to 98477254 13 - TSS region transcription start site region 110555
Tssr110556 11 98477383 to 98477395 12 - TSS region transcription start site region 110556
Tssr110557 11 98477397 to 98477419 22 - TSS region transcription start site region 110557
Tssr110558 11 98479451 to 98479460 9 - TSS region transcription start site region 110558
Tssr110559 11 98479516 to 98479519 3 - TSS region transcription start site region 110559
Tssr104750 11 98493108 to 98493111 3 + TSS region transcription start site region 104750
Cpgi3760 11 98501343 to 98501516 173 CpG island CpG island 3760
Tssr110560 11 98508812 to 98508833 21 - TSS region transcription start site region 110560
Tssr110561 11 98508873 to 98508888 15 - TSS region transcription start site region 110561
Tssr110562 11 98535672 to 98535676 4 - TSS region transcription start site region 110562
Cpgi3761 11 98545407 to 98546374 967 CpG island CpG island 3761
Tssr104751 11 98545658 to 98545681 23 + TSS region transcription start site region 104751
Tssr110563 11 98545773 to 98545788 15 - TSS region transcription start site region 110563
Tssr110564 11 98545807 to 98545819 12 - TSS region transcription start site region 110564
Tssr110565 11 98545828 to 98545845 17 - TSS region transcription start site region 110565
Tssr110566 11 98545850 to 98545863 13 - TSS region transcription start site region 110566
Tssr110567 11 98545896 to 98545907 11 - TSS region transcription start site region 110567
Tssr110568 11 98545920 to 98545945 25 - TSS region transcription start site region 110568
Tssr110569 11 98545950 to 98545981 31 - TSS region transcription start site region 110569
Tssr110570 11 98545991 to 98546007 16 - TSS region transcription start site region 110570
Tssr110571 11 98546026 to 98546045 19 - TSS region transcription start site region 110571
Tssr110572 11 98546056 to 98546081 25 - TSS region transcription start site region 110572
Tssr110573 11 98546134 to 98546141 7 - TSS region transcription start site region 110573
Tssr110574 11 98546198 to 98546203 5 - TSS region transcription start site region 110574
Tssr110575 11 98546655 to 98546666 11 - TSS region transcription start site region 110575
Cpgi3762 11 98550743 to 98551539 796 CpG island CpG island 3762
Tssr110576 11 98550968 to 98550977 9 - TSS region transcription start site region 110576
Zpbp2 11 98551097 to 98558665 7568 + protein coding gene zona pellucida binding protein 2
Tssr104752 11 98551105 to 98551165 60 + TSS region transcription start site region 104752
Tssr104753 11 98551173 to 98551178 5 + TSS region transcription start site region 104753
Gm38981 11 98563696 to 98568766 5070 - lncRNA gene predicted gene, 38981
Gm31460 11 98575633 to 98581152 5519 + lncRNA gene predicted gene, 31460
Tssr104754 11 98575917 to 98575929 12 + TSS region transcription start site region 104754