Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:97983560-98323570

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plxdc1 11 97923238 to 97986444 63206 - protein coding gene plexin domain containing 1
Cpgi3730 11 97985729 to 97987047 1318 CpG island CpG island 3730
Tssr110492 11 97986384 to 97986472 88 - TSS region transcription start site region 110492
Cpgi3731 11 97987680 to 97987990 310 CpG island CpG island 3731
n-TCgca55 11 97988246 to 97988317 71 - tRNA gene nuclear encoded tRNA cysteine 55 (anticodon GCA)
Cpgi3732 11 97988420 to 97988911 491 CpG island CpG island 3732
Tssr110493 11 97988690 to 97988702 12 - TSS region transcription start site region 110493
Tssr110494 11 97988708 to 97988723 15 - TSS region transcription start site region 110494
n-TCgca54 11 97988923 to 97988994 71 - tRNA gene nuclear encoded tRNA cysteine 54 (anticodon GCA)
Arl5c 11 97989578 to 97996181 6603 - protein coding gene ADP-ribosylation factor-like 5C
Cpgi3733 11 97994719 to 97995719 1000 CpG island CpG island 3733
Tssr104691 11 97995050 to 97995058 8 + TSS region transcription start site region 104691
Cpgi3734 11 97995783 to 97996068 285 CpG island CpG island 3734
Tssr110495 11 97995863 to 97995935 72 - TSS region transcription start site region 110495
Tssr110496 11 97996052 to 97996075 23 - TSS region transcription start site region 110496
Tssr110497 11 97996171 to 97996190 19 - TSS region transcription start site region 110497
Tssr110498 11 97998195 to 97998207 12 - TSS region transcription start site region 110498
Tssr110499 11 97999373 to 97999389 16 - TSS region transcription start site region 110499
Tssr104692 11 97999529 to 97999547 18 + TSS region transcription start site region 104692
Tssr104693 11 97999550 to 97999563 13 + TSS region transcription start site region 104693
Tssr104694 11 98000675 to 98000686 11 + TSS region transcription start site region 104694
Cacnb1 11 98001508 to 98022975 21467 - protein coding gene calcium channel, voltage-dependent, beta 1 subunit
Cpgi3735 11 98002958 to 98003274 316 CpG island CpG island 3735
Cpgi3736 11 98004987 to 98005222 235 CpG island CpG island 3736
Tssr110500 11 98013001 to 98013022 21 - TSS region transcription start site region 110500
Tssr110501 11 98018308 to 98018363 55 - TSS region transcription start site region 110501
D11Lis4 11 98019144 to 98019308 164 DNA segment DNA segment, Chr 11, Lisse 4
Cpgi3737 11 98021826 to 98023208 1382 CpG island CpG island 3737
Tssr110502 11 98022594 to 98022671 77 - TSS region transcription start site region 110502
Tssr104695 11 98022701 to 98022730 29 + TSS region transcription start site region 104695
Tssr104696 11 98022792 to 98022802 10 + TSS region transcription start site region 104696
Gm11629 11 98022955 to 98026745 3790 + unclassified non-coding RNA gene predicted gene 11629
Tssr104697 11 98023071 to 98023085 14 + TSS region transcription start site region 104697
Cpgi3738 11 98026480 to 98027552 1072 CpG island CpG island 3738
Tssr110503 11 98026656 to 98026683 27 - TSS region transcription start site region 110503
Tssr104698 11 98026695 to 98026744 49 + TSS region transcription start site region 104698
Rpl19 11 98026710 to 98030492 3782 + protein coding gene ribosomal protein L19
Tssr104699 11 98026918 to 98026931 13 + TSS region transcription start site region 104699
Tssr104700 11 98026939 to 98026968 29 + TSS region transcription start site region 104700
Tssr104701 11 98026983 to 98026992 9 + TSS region transcription start site region 104701
Gm27597 11 98029413 to 98029492 79 + miRNA gene predicted gene, 27597
Cpgi3739 11 98035940 to 98036454 514 CpG island CpG island 3739
Stac2 11 98036623 to 98053462 16839 - protein coding gene SH3 and cysteine rich domain 2
Tssr110504 11 98043054 to 98043059 5 - TSS region transcription start site region 110504
Tssr110505 11 98043591 to 98043616 25 - TSS region transcription start site region 110505
Tssr110506 11 98051720 to 98051732 12 - TSS region transcription start site region 110506
Cpgi3740 11 98052148 to 98053571 1423 CpG island CpG island 3740
Tssr110507 11 98052987 to 98053029 42 - TSS region transcription start site region 110507
Tssr110508 11 98053243 to 98053261 18 - TSS region transcription start site region 110508
Tssr110509 11 98053278 to 98053291 13 - TSS region transcription start site region 110509
Tssr110510 11 98053296 to 98053337 41 - TSS region transcription start site region 110510
Tssr110511 11 98053341 to 98053362 21 - TSS region transcription start site region 110511
Tssr110512 11 98053415 to 98053467 52 - TSS region transcription start site region 110512
Tssr104702 11 98058276 to 98058307 31 + TSS region transcription start site region 104702
Gm11631 11 98063888 to 98064043 155 + pseudogene predicted gene 11631
Fbxl20 11 98082556 to 98150403 67847 - protein coding gene F-box and leucine-rich repeat protein 20
Gm11632 11 98084457 to 98085424 967 - unclassified non-coding RNA gene predicted gene 11632
Tssr110513 11 98101507 to 98101520 13 - TSS region transcription start site region 110513
Cpgi3741 11 98148850 to 98150685 1835 CpG island CpG island 3741
Tssr110514 11 98149551 to 98149621 70 - TSS region transcription start site region 110514
Med1 11 98152154 to 98193293 41139 - protein coding gene mediator complex subunit 1
Tssr110515 11 98153560 to 98153570 10 - TSS region transcription start site region 110515
Tssr110516 11 98179974 to 98180019 45 - TSS region transcription start site region 110516
Tssr104703 11 98185310 to 98185330 20 + TSS region transcription start site region 104703
Gm11604 11 98185366 to 98186107 741 + pseudogene predicted gene 11604
Cpgi3742 11 98192691 to 98193553 862 CpG island CpG island 3742
Tssr110517 11 98193267 to 98193298 31 - TSS region transcription start site region 110517
Gm38963 11 98193930 to 98202596 8666 - lncRNA gene predicted gene, 38963
Cpgi3743 11 98202577 to 98203983 1406 CpG island CpG island 3743
Tssr104704 11 98202738 to 98202749 11 + TSS region transcription start site region 104704
Tssr104705 11 98202758 to 98202801 43 + TSS region transcription start site region 104705
Tssr104706 11 98202815 to 98202820 5 + TSS region transcription start site region 104706
Cdk12 11 98203059 to 98278504 75445 + protein coding gene cyclin-dependent kinase 12
Tssr110518 11 98203158 to 98203173 15 - TSS region transcription start site region 110518
Tssr104707 11 98203307 to 98203348 41 + TSS region transcription start site region 104707
Tssr104708 11 98210796 to 98210828 32 + TSS region transcription start site region 104708
Tssr104709 11 98217206 to 98217212 6 + TSS region transcription start site region 104709
Gm27399 11 98238618 to 98238695 77 + miRNA gene predicted gene, 27399
Tssr104710 11 98248315 to 98248321 6 + TSS region transcription start site region 104710
Tssr104711 11 98253073 to 98253078 5 + TSS region transcription start site region 104711
Mir5119 11 98262606 to 98262662 56 + miRNA gene microRNA 5119
n-R5s73 11 98273260 to 98273366 106 - rRNA gene nuclear encoded rRNA 5S 73
D11Ingm46 11 98274865 to 98274980 115 DNA segment DNA segment, Chr 11, Ingenium Pharmaceuticals 46
Gm20644 11 98285382 to 98287444 2062 + sense overlapping lncRNA gene predicted gene 20644
Gm31194 11 98293443 to 98296615 3172 + lncRNA gene predicted gene, 31194
Tssr104712 11 98294256 to 98294261 5 + TSS region transcription start site region 104712
Cpgi3744 11 98294273 to 98295271 998 CpG island CpG island 3744
Gm31317 11 98298777 to 98314135 15358 - lncRNA gene predicted gene, 31317
Cpgi3745 11 98313916 to 98314132 216 CpG island CpG island 3745
Cpgi3746 11 98319208 to 98319377 169 CpG island CpG island 3746
Tssr110519 11 98321281 to 98321284 3 - TSS region transcription start site region 110519