Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:97982556-98250403

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plxdc1 11 97923238 to 97986444 63206 - protein coding gene plexin domain containing 1
Cpgi3730 11 97985729 to 97987047 1318 CpG island CpG island 3730
Tssr110492 11 97986384 to 97986472 88 - TSS region transcription start site region 110492
Cpgi3731 11 97987680 to 97987990 310 CpG island CpG island 3731
n-TCgca55 11 97988246 to 97988317 71 - tRNA gene nuclear encoded tRNA cysteine 55 (anticodon GCA)
Cpgi3732 11 97988420 to 97988911 491 CpG island CpG island 3732
Tssr110493 11 97988690 to 97988702 12 - TSS region transcription start site region 110493
Tssr110494 11 97988708 to 97988723 15 - TSS region transcription start site region 110494
n-TCgca54 11 97988923 to 97988994 71 - tRNA gene nuclear encoded tRNA cysteine 54 (anticodon GCA)
Arl5c 11 97989578 to 97996181 6603 - protein coding gene ADP-ribosylation factor-like 5C
Cpgi3733 11 97994719 to 97995719 1000 CpG island CpG island 3733
Tssr104691 11 97995050 to 97995058 8 + TSS region transcription start site region 104691
Cpgi3734 11 97995783 to 97996068 285 CpG island CpG island 3734
Tssr110495 11 97995863 to 97995935 72 - TSS region transcription start site region 110495
Tssr110496 11 97996052 to 97996075 23 - TSS region transcription start site region 110496
Tssr110497 11 97996171 to 97996190 19 - TSS region transcription start site region 110497
Tssr110498 11 97998195 to 97998207 12 - TSS region transcription start site region 110498
Tssr110499 11 97999373 to 97999389 16 - TSS region transcription start site region 110499
Tssr104692 11 97999529 to 97999547 18 + TSS region transcription start site region 104692
Tssr104693 11 97999550 to 97999563 13 + TSS region transcription start site region 104693
Tssr104694 11 98000675 to 98000686 11 + TSS region transcription start site region 104694
Cacnb1 11 98001508 to 98022975 21467 - protein coding gene calcium channel, voltage-dependent, beta 1 subunit
Cpgi3735 11 98002958 to 98003274 316 CpG island CpG island 3735
Cpgi3736 11 98004987 to 98005222 235 CpG island CpG island 3736
Tssr110500 11 98013001 to 98013022 21 - TSS region transcription start site region 110500
Tssr110501 11 98018308 to 98018363 55 - TSS region transcription start site region 110501
D11Lis4 11 98019144 to 98019308 164 DNA segment DNA segment, Chr 11, Lisse 4
Cpgi3737 11 98021826 to 98023208 1382 CpG island CpG island 3737
Tssr110502 11 98022594 to 98022671 77 - TSS region transcription start site region 110502
Tssr104695 11 98022701 to 98022730 29 + TSS region transcription start site region 104695
Tssr104696 11 98022792 to 98022802 10 + TSS region transcription start site region 104696
Gm11629 11 98022955 to 98026745 3790 + unclassified non-coding RNA gene predicted gene 11629
Tssr104697 11 98023071 to 98023085 14 + TSS region transcription start site region 104697
Cpgi3738 11 98026480 to 98027552 1072 CpG island CpG island 3738
Tssr110503 11 98026656 to 98026683 27 - TSS region transcription start site region 110503
Tssr104698 11 98026695 to 98026744 49 + TSS region transcription start site region 104698
Rpl19 11 98026710 to 98030492 3782 + protein coding gene ribosomal protein L19
Tssr104699 11 98026918 to 98026931 13 + TSS region transcription start site region 104699
Tssr104700 11 98026939 to 98026968 29 + TSS region transcription start site region 104700
Tssr104701 11 98026983 to 98026992 9 + TSS region transcription start site region 104701
Gm27597 11 98029413 to 98029492 79 + miRNA gene predicted gene, 27597
Cpgi3739 11 98035940 to 98036454 514 CpG island CpG island 3739
Stac2 11 98036623 to 98053462 16839 - protein coding gene SH3 and cysteine rich domain 2
Tssr110504 11 98043054 to 98043059 5 - TSS region transcription start site region 110504
Tssr110505 11 98043591 to 98043616 25 - TSS region transcription start site region 110505
Tssr110506 11 98051720 to 98051732 12 - TSS region transcription start site region 110506
Cpgi3740 11 98052148 to 98053571 1423 CpG island CpG island 3740
Tssr110507 11 98052987 to 98053029 42 - TSS region transcription start site region 110507
Tssr110508 11 98053243 to 98053261 18 - TSS region transcription start site region 110508
Tssr110509 11 98053278 to 98053291 13 - TSS region transcription start site region 110509
Tssr110510 11 98053296 to 98053337 41 - TSS region transcription start site region 110510
Tssr110511 11 98053341 to 98053362 21 - TSS region transcription start site region 110511
Tssr110512 11 98053415 to 98053467 52 - TSS region transcription start site region 110512
Tssr104702 11 98058276 to 98058307 31 + TSS region transcription start site region 104702
Gm11631 11 98063888 to 98064043 155 + pseudogene predicted gene 11631
Fbxl20 11 98082556 to 98150403 67847 - protein coding gene F-box and leucine-rich repeat protein 20
Gm11632 11 98084457 to 98085424 967 - unclassified non-coding RNA gene predicted gene 11632
Tssr110513 11 98101507 to 98101520 13 - TSS region transcription start site region 110513
Cpgi3741 11 98148850 to 98150685 1835 CpG island CpG island 3741
Tssr110514 11 98149551 to 98149621 70 - TSS region transcription start site region 110514
Med1 11 98152154 to 98193293 41139 - protein coding gene mediator complex subunit 1
Tssr110515 11 98153560 to 98153570 10 - TSS region transcription start site region 110515
Tssr110516 11 98179974 to 98180019 45 - TSS region transcription start site region 110516
Tssr104703 11 98185310 to 98185330 20 + TSS region transcription start site region 104703
Gm11604 11 98185366 to 98186107 741 + pseudogene predicted gene 11604
Cpgi3742 11 98192691 to 98193553 862 CpG island CpG island 3742
Tssr110517 11 98193267 to 98193298 31 - TSS region transcription start site region 110517
Gm38963 11 98193930 to 98202596 8666 - lncRNA gene predicted gene, 38963
Cpgi3743 11 98202577 to 98203983 1406 CpG island CpG island 3743
Tssr104704 11 98202738 to 98202749 11 + TSS region transcription start site region 104704
Tssr104705 11 98202758 to 98202801 43 + TSS region transcription start site region 104705
Tssr104706 11 98202815 to 98202820 5 + TSS region transcription start site region 104706
Cdk12 11 98203059 to 98278504 75445 + protein coding gene cyclin-dependent kinase 12
Tssr110518 11 98203158 to 98203173 15 - TSS region transcription start site region 110518
Tssr104707 11 98203307 to 98203348 41 + TSS region transcription start site region 104707
Tssr104708 11 98210796 to 98210828 32 + TSS region transcription start site region 104708
Tssr104709 11 98217206 to 98217212 6 + TSS region transcription start site region 104709
Gm27399 11 98238618 to 98238695 77 + miRNA gene predicted gene, 27399
Tssr104710 11 98248315 to 98248321 6 + TSS region transcription start site region 104710