Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:97831671-98051740

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lasp1 11 97799005 to 97838765 39760 + protein coding gene LIM and SH3 protein 1
Tssr104681 11 97833287 to 97833291 4 + TSS region transcription start site region 104681
Tssr104682 11 97836353 to 97836368 15 + TSS region transcription start site region 104682
Tssr104683 11 97838106 to 97838119 13 + TSS region transcription start site region 104683
Tssr104684 11 97838131 to 97838146 15 + TSS region transcription start site region 104684
Tssr104685 11 97838412 to 97838425 13 + TSS region transcription start site region 104685
B230217C12Rik 11 97840780 to 97843043 2263 + protein coding gene RIKEN cDNA B230217C12 gene
Cpgi3726 11 97841217 to 97841426 209 CpG island CpG island 3726
Tssr104686 11 97841282 to 97841359 77 + TSS region transcription start site region 104686
Tssr104687 11 97844517 to 97844531 14 + TSS region transcription start site region 104687
Fbxo47 11 97853826 to 97884154 30328 - protein coding gene F-box protein 47
Tssr110487 11 97855535 to 97855562 27 - TSS region transcription start site region 110487
Cpgi3727 11 97883522 to 97884351 829 CpG island CpG island 3727
Tssr110488 11 97884122 to 97884139 17 - TSS region transcription start site region 110488
Tssr104688 11 97884538 to 97884549 11 + TSS region transcription start site region 104688
Tssr104689 11 97884580 to 97884594 14 + TSS region transcription start site region 104689
Gm11630 11 97884594 to 97893811 9217 + lincRNA gene predicted gene 11630
Tssr104690 11 97921444 to 97921446 2 + TSS region transcription start site region 104690
Cpgi3728 11 97923032 to 97923311 279 CpG island CpG island 3728
Plxdc1 11 97923238 to 97986444 63206 - protein coding gene plexin domain containing 1
Gm22461 11 97941671 to 97941740 69 - miRNA gene predicted gene, 22461
Tssr110489 11 97949637 to 97949658 21 - TSS region transcription start site region 110489
Tssr110490 11 97954956 to 97954972 16 - TSS region transcription start site region 110490
Tssr110491 11 97955268 to 97955310 42 - TSS region transcription start site region 110491
Cpgi3729 11 97966868 to 97967086 218 CpG island CpG island 3729
Gm11633 11 97968792 to 97969235 443 + pseudogene predicted gene 11633
Cpgi3730 11 97985729 to 97987047 1318 CpG island CpG island 3730
Tssr110492 11 97986384 to 97986472 88 - TSS region transcription start site region 110492
Cpgi3731 11 97987680 to 97987990 310 CpG island CpG island 3731
n-TCgca55 11 97988246 to 97988317 71 - tRNA gene nuclear encoded tRNA cysteine 55 (anticodon GCA)
Cpgi3732 11 97988420 to 97988911 491 CpG island CpG island 3732
Tssr110493 11 97988690 to 97988702 12 - TSS region transcription start site region 110493
Tssr110494 11 97988708 to 97988723 15 - TSS region transcription start site region 110494
n-TCgca54 11 97988923 to 97988994 71 - tRNA gene nuclear encoded tRNA cysteine 54 (anticodon GCA)
Arl5c 11 97989578 to 97996181 6603 - protein coding gene ADP-ribosylation factor-like 5C
Cpgi3733 11 97994719 to 97995719 1000 CpG island CpG island 3733
Tssr104691 11 97995050 to 97995058 8 + TSS region transcription start site region 104691
Cpgi3734 11 97995783 to 97996068 285 CpG island CpG island 3734
Tssr110495 11 97995863 to 97995935 72 - TSS region transcription start site region 110495
Tssr110496 11 97996052 to 97996075 23 - TSS region transcription start site region 110496
Tssr110497 11 97996171 to 97996190 19 - TSS region transcription start site region 110497
Tssr110498 11 97998195 to 97998207 12 - TSS region transcription start site region 110498
Tssr110499 11 97999373 to 97999389 16 - TSS region transcription start site region 110499
Tssr104692 11 97999529 to 97999547 18 + TSS region transcription start site region 104692
Tssr104693 11 97999550 to 97999563 13 + TSS region transcription start site region 104693
Tssr104694 11 98000675 to 98000686 11 + TSS region transcription start site region 104694
Cacnb1 11 98001508 to 98022975 21467 - protein coding gene calcium channel, voltage-dependent, beta 1 subunit
Cpgi3735 11 98002958 to 98003274 316 CpG island CpG island 3735
Cpgi3736 11 98004987 to 98005222 235 CpG island CpG island 3736
Tssr110500 11 98013001 to 98013022 21 - TSS region transcription start site region 110500
Tssr110501 11 98018308 to 98018363 55 - TSS region transcription start site region 110501
D11Lis4 11 98019144 to 98019308 164 DNA segment DNA segment, Chr 11, Lisse 4
Cpgi3737 11 98021826 to 98023208 1382 CpG island CpG island 3737
Tssr110502 11 98022594 to 98022671 77 - TSS region transcription start site region 110502
Tssr104695 11 98022701 to 98022730 29 + TSS region transcription start site region 104695
Tssr104696 11 98022792 to 98022802 10 + TSS region transcription start site region 104696
Gm11629 11 98022955 to 98026745 3790 + unclassified non-coding RNA gene predicted gene 11629
Tssr104697 11 98023071 to 98023085 14 + TSS region transcription start site region 104697
Cpgi3738 11 98026480 to 98027552 1072 CpG island CpG island 3738
Tssr110503 11 98026656 to 98026683 27 - TSS region transcription start site region 110503
Tssr104698 11 98026695 to 98026744 49 + TSS region transcription start site region 104698
Rpl19 11 98026710 to 98030492 3782 + protein coding gene ribosomal protein L19
Tssr104699 11 98026918 to 98026931 13 + TSS region transcription start site region 104699
Tssr104700 11 98026939 to 98026968 29 + TSS region transcription start site region 104700
Tssr104701 11 98026983 to 98026992 9 + TSS region transcription start site region 104701
Gm27597 11 98029413 to 98029492 79 + miRNA gene predicted gene, 27597
Cpgi3739 11 98035940 to 98036454 514 CpG island CpG island 3739
Stac2 11 98036623 to 98053462 16839 - protein coding gene SH3 and cysteine rich domain 2
Tssr110504 11 98043054 to 98043059 5 - TSS region transcription start site region 110504
Tssr110505 11 98043591 to 98043616 25 - TSS region transcription start site region 110505
Tssr110506 11 98051720 to 98051732 12 - TSS region transcription start site region 110506