Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:97754144-98284308

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152 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cwc25 11 97745481 to 97766556 21075 - protein coding gene CWC25 spliceosome-associated protein
Cpgi3722 11 97766345 to 97766907 562 CpG island CpG island 3722
Tssr110481 11 97766480 to 97766487 7 - TSS region transcription start site region 110481
Tssr110482 11 97766508 to 97766574 66 - TSS region transcription start site region 110482
Tssr104657 11 97766628 to 97766687 59 + TSS region transcription start site region 104657
Tssr104658 11 97766826 to 97766860 34 + TSS region transcription start site region 104658
Atp5l2-ps 11 97768060 to 97768371 311 + pseudogene ATP synthase, H+ transporting, mitochondrial FO complex, subunit G2, pseudogene
n-TCgca18 11 97769829 to 97769900 71 - tRNA gene nuclear encoded tRNA cysteine 18 (anticodon GCA)
1700001P01Rik 11 97771481 to 97775918 4437 - protein coding gene RIKEN cDNA 1700001P01 gene
Tssr104659 11 97775383 to 97775394 11 + TSS region transcription start site region 104659
Cpgi3723 11 97775475 to 97775850 375 CpG island CpG island 3723
Tssr110483 11 97775876 to 97775899 23 - TSS region transcription start site region 110483
Rpl23 11 97777527 to 97782437 4910 - protein coding gene ribosomal protein L23
Gm27326 11 97780182 to 97780276 94 - snoRNA gene predicted gene, 27326
Tssr3663 11 97780798 to 97780801 3 + TSS region transcription start site region 3663
Snora21 11 97781639 to 97781766 127 - snoRNA gene small nucleolar RNA, H/ACA box 21
Cpgi3724 11 97781775 to 97782743 968 CpG island CpG island 3724
Tssr110484 11 97782377 to 97782399 22 - TSS region transcription start site region 110484
Tssr110485 11 97782409 to 97782420 11 - TSS region transcription start site region 110485
n-TCgca56 11 97797072 to 97797143 71 + tRNA gene nuclear encoded tRNA cysteine 56 (anticodon GCA)
n-TCgca51 11 97798906 to 97798977 71 - tRNA gene nuclear encoded tRNA cysteine 51 (anticodon GCA)
Tssr104660 11 97798995 to 97799021 26 + TSS region transcription start site region 104660
Lasp1 11 97799005 to 97838765 39760 + protein coding gene LIM and SH3 protein 1
Cpgi3725 11 97799017 to 97800593 1576 CpG island CpG island 3725
Tssr104661 11 97799324 to 97799335 11 + TSS region transcription start site region 104661
Tssr104662 11 97799390 to 97799401 11 + TSS region transcription start site region 104662
Tssr104663 11 97799574 to 97799581 7 + TSS region transcription start site region 104663
Tssr104664 11 97799586 to 97799597 11 + TSS region transcription start site region 104664
Tssr104665 11 97799608 to 97799619 11 + TSS region transcription start site region 104665
Tssr104666 11 97799627 to 97799647 20 + TSS region transcription start site region 104666
Tssr104667 11 97799661 to 97799709 48 + TSS region transcription start site region 104667
Tssr104668 11 97799760 to 97799771 11 + TSS region transcription start site region 104668
Tssr104669 11 97799772 to 97799781 9 + TSS region transcription start site region 104669
Tssr104670 11 97801917 to 97801955 38 + TSS region transcription start site region 104670
Tssr104671 11 97806302 to 97806341 39 + TSS region transcription start site region 104671
Tssr104672 11 97806598 to 97806620 22 + TSS region transcription start site region 104672
Tssr104673 11 97806721 to 97806771 50 + TSS region transcription start site region 104673
Tssr104674 11 97806811 to 97806815 4 + TSS region transcription start site region 104674
Tssr104675 11 97815591 to 97815598 7 + TSS region transcription start site region 104675
Tssr104676 11 97815639 to 97815650 11 + TSS region transcription start site region 104676
Tssr104677 11 97815653 to 97815667 14 + TSS region transcription start site region 104677
Tssr104678 11 97815725 to 97815736 11 + TSS region transcription start site region 104678
Tssr104679 11 97825559 to 97825581 22 + TSS region transcription start site region 104679
Tssr110486 11 97829915 to 97829944 29 - TSS region transcription start site region 110486
Tssr104680 11 97830132 to 97830143 11 + TSS region transcription start site region 104680
Tssr104681 11 97833287 to 97833291 4 + TSS region transcription start site region 104681
Tssr104682 11 97836353 to 97836368 15 + TSS region transcription start site region 104682
Tssr104683 11 97838106 to 97838119 13 + TSS region transcription start site region 104683
Tssr104684 11 97838131 to 97838146 15 + TSS region transcription start site region 104684
Tssr104685 11 97838412 to 97838425 13 + TSS region transcription start site region 104685
B230217C12Rik 11 97840780 to 97843043 2263 + protein coding gene RIKEN cDNA B230217C12 gene
Cpgi3726 11 97841217 to 97841426 209 CpG island CpG island 3726
Tssr104686 11 97841282 to 97841359 77 + TSS region transcription start site region 104686
Tssr104687 11 97844517 to 97844531 14 + TSS region transcription start site region 104687
Fbxo47 11 97853826 to 97884154 30328 - protein coding gene F-box protein 47
Tssr110487 11 97855535 to 97855562 27 - TSS region transcription start site region 110487
Cpgi3727 11 97883522 to 97884351 829 CpG island CpG island 3727
Tssr110488 11 97884122 to 97884139 17 - TSS region transcription start site region 110488
Tssr104688 11 97884538 to 97884549 11 + TSS region transcription start site region 104688
Tssr104689 11 97884580 to 97884594 14 + TSS region transcription start site region 104689
Gm11630 11 97884594 to 97893811 9217 + lincRNA gene predicted gene 11630
Tssr104690 11 97921444 to 97921446 2 + TSS region transcription start site region 104690
Cpgi3728 11 97923032 to 97923311 279 CpG island CpG island 3728
Plxdc1 11 97923238 to 97986444 63206 - protein coding gene plexin domain containing 1
Gm22461 11 97941671 to 97941740 69 - miRNA gene predicted gene, 22461
Tssr110489 11 97949637 to 97949658 21 - TSS region transcription start site region 110489
Tssr110490 11 97954956 to 97954972 16 - TSS region transcription start site region 110490
Tssr110491 11 97955268 to 97955310 42 - TSS region transcription start site region 110491
Cpgi3729 11 97966868 to 97967086 218 CpG island CpG island 3729
Gm11633 11 97968792 to 97969235 443 + pseudogene predicted gene 11633
Cpgi3730 11 97985729 to 97987047 1318 CpG island CpG island 3730
Tssr110492 11 97986384 to 97986472 88 - TSS region transcription start site region 110492
Cpgi3731 11 97987680 to 97987990 310 CpG island CpG island 3731
n-TCgca55 11 97988246 to 97988317 71 - tRNA gene nuclear encoded tRNA cysteine 55 (anticodon GCA)
Cpgi3732 11 97988420 to 97988911 491 CpG island CpG island 3732
Tssr110493 11 97988690 to 97988702 12 - TSS region transcription start site region 110493
Tssr110494 11 97988708 to 97988723 15 - TSS region transcription start site region 110494
n-TCgca54 11 97988923 to 97988994 71 - tRNA gene nuclear encoded tRNA cysteine 54 (anticodon GCA)
Arl5c 11 97989578 to 97996181 6603 - protein coding gene ADP-ribosylation factor-like 5C
Cpgi3733 11 97994719 to 97995719 1000 CpG island CpG island 3733
Tssr104691 11 97995050 to 97995058 8 + TSS region transcription start site region 104691
Cpgi3734 11 97995783 to 97996068 285 CpG island CpG island 3734
Tssr110495 11 97995863 to 97995935 72 - TSS region transcription start site region 110495
Tssr110496 11 97996052 to 97996075 23 - TSS region transcription start site region 110496
Tssr110497 11 97996171 to 97996190 19 - TSS region transcription start site region 110497
Tssr110498 11 97998195 to 97998207 12 - TSS region transcription start site region 110498
Tssr110499 11 97999373 to 97999389 16 - TSS region transcription start site region 110499
Tssr104692 11 97999529 to 97999547 18 + TSS region transcription start site region 104692
Tssr104693 11 97999550 to 97999563 13 + TSS region transcription start site region 104693
Tssr104694 11 98000675 to 98000686 11 + TSS region transcription start site region 104694
Cacnb1 11 98001508 to 98022975 21467 - protein coding gene calcium channel, voltage-dependent, beta 1 subunit
Cpgi3735 11 98002958 to 98003274 316 CpG island CpG island 3735
Cpgi3736 11 98004987 to 98005222 235 CpG island CpG island 3736
Tssr110500 11 98013001 to 98013022 21 - TSS region transcription start site region 110500
Tssr110501 11 98018308 to 98018363 55 - TSS region transcription start site region 110501
D11Lis4 11 98019144 to 98019308 164 DNA segment DNA segment, Chr 11, Lisse 4
Cpgi3737 11 98021826 to 98023208 1382 CpG island CpG island 3737
Tssr110502 11 98022594 to 98022671 77 - TSS region transcription start site region 110502
Tssr104695 11 98022701 to 98022730 29 + TSS region transcription start site region 104695
Tssr104696 11 98022792 to 98022802 10 + TSS region transcription start site region 104696
Gm11629 11 98022955 to 98026745 3790 + unclassified non-coding RNA gene predicted gene 11629
Tssr104697 11 98023071 to 98023085 14 + TSS region transcription start site region 104697
Cpgi3738 11 98026480 to 98027552 1072 CpG island CpG island 3738
Tssr110503 11 98026656 to 98026683 27 - TSS region transcription start site region 110503
Tssr104698 11 98026695 to 98026744 49 + TSS region transcription start site region 104698
Rpl19 11 98026710 to 98030492 3782 + protein coding gene ribosomal protein L19
Tssr104699 11 98026918 to 98026931 13 + TSS region transcription start site region 104699
Tssr104700 11 98026939 to 98026968 29 + TSS region transcription start site region 104700
Tssr104701 11 98026983 to 98026992 9 + TSS region transcription start site region 104701
Gm27597 11 98029413 to 98029492 79 + miRNA gene predicted gene, 27597
Cpgi3739 11 98035940 to 98036454 514 CpG island CpG island 3739
Stac2 11 98036623 to 98053462 16839 - protein coding gene SH3 and cysteine rich domain 2
Tssr110504 11 98043054 to 98043059 5 - TSS region transcription start site region 110504
Tssr110505 11 98043591 to 98043616 25 - TSS region transcription start site region 110505
Tssr110506 11 98051720 to 98051732 12 - TSS region transcription start site region 110506
Cpgi3740 11 98052148 to 98053571 1423 CpG island CpG island 3740
Tssr110507 11 98052987 to 98053029 42 - TSS region transcription start site region 110507
Tssr110508 11 98053243 to 98053261 18 - TSS region transcription start site region 110508
Tssr110509 11 98053278 to 98053291 13 - TSS region transcription start site region 110509
Tssr110510 11 98053296 to 98053337 41 - TSS region transcription start site region 110510
Tssr110511 11 98053341 to 98053362 21 - TSS region transcription start site region 110511
Tssr110512 11 98053415 to 98053467 52 - TSS region transcription start site region 110512
Tssr104702 11 98058276 to 98058307 31 + TSS region transcription start site region 104702
Gm11631 11 98063888 to 98064043 155 + pseudogene predicted gene 11631
Fbxl20 11 98082556 to 98150403 67847 - protein coding gene F-box and leucine-rich repeat protein 20
Gm11632 11 98084457 to 98085424 967 - unclassified non-coding RNA gene predicted gene 11632
Tssr110513 11 98101507 to 98101520 13 - TSS region transcription start site region 110513
Cpgi3741 11 98148850 to 98150685 1835 CpG island CpG island 3741
Tssr110514 11 98149551 to 98149621 70 - TSS region transcription start site region 110514
Med1 11 98152154 to 98193293 41139 - protein coding gene mediator complex subunit 1
Tssr110515 11 98153560 to 98153570 10 - TSS region transcription start site region 110515
Tssr110516 11 98179974 to 98180019 45 - TSS region transcription start site region 110516
Tssr104703 11 98185310 to 98185330 20 + TSS region transcription start site region 104703
Gm11604 11 98185366 to 98186107 741 + pseudogene predicted gene 11604
Cpgi3742 11 98192691 to 98193553 862 CpG island CpG island 3742
Tssr110517 11 98193267 to 98193298 31 - TSS region transcription start site region 110517
Gm38963 11 98193930 to 98202596 8666 - lncRNA gene predicted gene, 38963
Cpgi3743 11 98202577 to 98203983 1406 CpG island CpG island 3743
Tssr104704 11 98202738 to 98202749 11 + TSS region transcription start site region 104704
Tssr104705 11 98202758 to 98202801 43 + TSS region transcription start site region 104705
Tssr104706 11 98202815 to 98202820 5 + TSS region transcription start site region 104706
Cdk12 11 98203059 to 98278504 75445 + protein coding gene cyclin-dependent kinase 12
Tssr110518 11 98203158 to 98203173 15 - TSS region transcription start site region 110518
Tssr104707 11 98203307 to 98203348 41 + TSS region transcription start site region 104707
Tssr104708 11 98210796 to 98210828 32 + TSS region transcription start site region 104708
Tssr104709 11 98217206 to 98217212 6 + TSS region transcription start site region 104709
Gm27399 11 98238618 to 98238695 77 + miRNA gene predicted gene, 27399
Tssr104710 11 98248315 to 98248321 6 + TSS region transcription start site region 104710
Tssr104711 11 98253073 to 98253078 5 + TSS region transcription start site region 104711
Mir5119 11 98262606 to 98262662 56 + miRNA gene microRNA 5119
n-R5s73 11 98273260 to 98273366 106 - rRNA gene nuclear encoded rRNA 5S 73
D11Ingm46 11 98274865 to 98274980 115 DNA segment DNA segment, Chr 11, Ingenium Pharmaceuticals 46