Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:97540783-98451068

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330 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Srcin1 11 97509340 to 97575126 65786 - protein coding gene SRC kinase signaling inhibitor 1
Cpgi3710 11 97546008 to 97547523 1515 CpG island CpG island 3710
Tssr110441 11 97547202 to 97547224 22 - TSS region transcription start site region 110441
Cpgi3711 11 97551611 to 97551956 345 CpG island CpG island 3711
Cpgi3712 11 97563859 to 97564066 207 CpG island CpG island 3712
Cpgi3713 11 97573793 to 97574028 235 CpG island CpG island 3713
Tssr110442 11 97574011 to 97574022 11 - TSS region transcription start site region 110442
Tssr110443 11 97574024 to 97574039 15 - TSS region transcription start site region 110443
Tssr110444 11 97574040 to 97574064 24 - TSS region transcription start site region 110444
Tssr110445 11 97574068 to 97574082 14 - TSS region transcription start site region 110445
Cpgi3714 11 97574189 to 97576006 1817 CpG island CpG island 3714
Tssr104636 11 97574320 to 97574333 13 + TSS region transcription start site region 104636
Tssr110446 11 97575156 to 97575208 52 - TSS region transcription start site region 110446
Tssr110447 11 97575210 to 97575236 26 - TSS region transcription start site region 110447
Tssr110448 11 97575239 to 97575256 17 - TSS region transcription start site region 110448
Tssr110449 11 97575272 to 97575275 3 - TSS region transcription start site region 110449
Tssr110450 11 97576334 to 97576355 21 - TSS region transcription start site region 110450
Tssr110451 11 97576441 to 97576449 8 - TSS region transcription start site region 110451
Tssr104637 11 97598503 to 97598524 21 + TSS region transcription start site region 104637
2410003L11Rik 11 97598511 to 97622893 24382 + lncRNA gene RIKEN cDNA 2410003L11 gene
Gm38962 11 97615355 to 97618548 3193 - lncRNA gene predicted gene, 38962
Epop 11 97627389 to 97629702 2313 - protein coding gene elongin BC and polycomb repressive complex 2 associated protein
Cpgi3715 11 97627824 to 97630250 2426 CpG island CpG island 3715
Tssr110452 11 97628610 to 97628623 13 - TSS region transcription start site region 110452
Tssr110453 11 97628634 to 97628647 13 - TSS region transcription start site region 110453
Tssr110454 11 97628902 to 97628918 16 - TSS region transcription start site region 110454
Tssr110455 11 97629259 to 97629280 21 - TSS region transcription start site region 110455
Tssr110456 11 97629294 to 97629305 11 - TSS region transcription start site region 110456
Tssr110457 11 97629366 to 97629381 15 - TSS region transcription start site region 110457
Tssr110458 11 97629669 to 97629676 7 - TSS region transcription start site region 110458
Tssr110459 11 97629685 to 97629715 30 - TSS region transcription start site region 110459
Tssr110460 11 97629717 to 97629745 28 - TSS region transcription start site region 110460
Tssr104638 11 97629841 to 97629886 45 + TSS region transcription start site region 104638
Gm11613 11 97644184 to 97660367 16183 - lncRNA gene predicted gene 11613
Tssr110461 11 97657312 to 97657323 11 - TSS region transcription start site region 110461
Tssr104639 11 97657420 to 97657476 56 + TSS region transcription start site region 104639
Tssr110462 11 97657990 to 97658001 11 - TSS region transcription start site region 110462
Tssr104640 11 97658984 to 97658997 13 + TSS region transcription start site region 104640
Cpgi3716 11 97659612 to 97660974 1362 CpG island CpG island 3716
Tssr104641 11 97659706 to 97659781 75 + TSS region transcription start site region 104641
Tssr104642 11 97659794 to 97659813 19 + TSS region transcription start site region 104642
Gm24158 11 97660257 to 97660327 70 - miRNA gene predicted gene, 24158
Tssr110463 11 97660296 to 97660351 55 - TSS region transcription start site region 110463
Tssr110464 11 97660353 to 97660401 48 - TSS region transcription start site region 110464
Tssr104643 11 97660469 to 97660500 31 + TSS region transcription start site region 104643
Tssr110465 11 97661729 to 97661754 25 - TSS region transcription start site region 110465
Tssr104644 11 97661875 to 97661878 3 + TSS region transcription start site region 104644
Tssr104645 11 97662444 to 97662462 18 + TSS region transcription start site region 104645
Tssr104646 11 97662729 to 97662746 17 + TSS region transcription start site region 104646
Cpgi3717 11 97662772 to 97664315 1543 CpG island CpG island 3717
Tssr104647 11 97663015 to 97663034 19 + TSS region transcription start site region 104647
Tssr104648 11 97663077 to 97663084 7 + TSS region transcription start site region 104648
Tssr104649 11 97663101 to 97663141 40 + TSS region transcription start site region 104649
Tssr104650 11 97663195 to 97663281 86 + TSS region transcription start site region 104650
Tssr104651 11 97663366 to 97663386 20 + TSS region transcription start site region 104651
Mllt6 11 97663412 to 97685461 22049 + protein coding gene myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6
Tssr110466 11 97663569 to 97663578 9 - TSS region transcription start site region 110466
Tssr110467 11 97663673 to 97663703 30 - TSS region transcription start site region 110467
Tssr110468 11 97664756 to 97664766 10 - TSS region transcription start site region 110468
Tssr110469 11 97664803 to 97664832 29 - TSS region transcription start site region 110469
Mir6927 11 97677060 to 97677130 70 + miRNA gene microRNA 6927
Tssr104652 11 97683106 to 97683111 5 + TSS region transcription start site region 104652
Cpgi3718 11 97685569 to 97685970 401 CpG island CpG island 3718
Tssr104653 11 97685794 to 97685845 51 + TSS region transcription start site region 104653
Cisd3 11 97685826 to 97688621 2795 + protein coding gene CDGSH iron sulfur domain 3
Tssr104654 11 97685903 to 97685966 63 + TSS region transcription start site region 104654
Tssr110470 11 97687206 to 97687230 24 - TSS region transcription start site region 110470
Pcgf2 11 97688823 to 97700497 11674 - protein coding gene polycomb group ring finger 2
Tssr110471 11 97690108 to 97690165 57 - TSS region transcription start site region 110471
Tssr110472 11 97690343 to 97690358 15 - TSS region transcription start site region 110472
Cpgi3719 11 97698596 to 97701156 2560 CpG island CpG island 3719
Tssr110473 11 97699555 to 97699572 17 - TSS region transcription start site region 110473
Tssr110474 11 97699634 to 97699698 64 - TSS region transcription start site region 110474
Tssr110475 11 97699700 to 97699709 9 - TSS region transcription start site region 110475
Tssr110476 11 97700327 to 97700349 22 - TSS region transcription start site region 110476
Cpgi3720 11 97702356 to 97703697 1341 CpG island CpG island 3720
n-TNgtt8 11 97702449 to 97702522 73 - tRNA gene nuclear encoded tRNA asparagine 8 (anticodon GTT)
Tssr104655 11 97703394 to 97703455 61 + TSS region transcription start site region 104655
Psmb3 11 97703434 to 97713500 10066 + protein coding gene proteasome (prosome, macropain) subunit, beta type 3
D11Mit145.2 11 97714590 to 97714701 111 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 145.2
D11Mit145 11 97714679 to 97714829 150 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 145
Pip4k2b 11 97715157 to 97744704 29547 - protein coding gene phosphatidylinositol-5-phosphate 4-kinase, type II, beta
Tssr110477 11 97716907 to 97716923 16 - TSS region transcription start site region 110477
Tssr110478 11 97718409 to 97718420 11 - TSS region transcription start site region 110478
Tssr110479 11 97718437 to 97718451 14 - TSS region transcription start site region 110479
Gm11614 11 97723651 to 97725711 2060 + antisense lncRNA gene predicted gene 11614
Tssr104656 11 97726805 to 97726825 20 + TSS region transcription start site region 104656
Tssr3662 11 97728359 to 97728408 49 - TSS region transcription start site region 3662
Cpgi3721 11 97743873 to 97745495 1622 CpG island CpG island 3721
Tssr110480 11 97744659 to 97744774 115 - TSS region transcription start site region 110480
Mir8102 11 97744897 to 97745035 138 + miRNA gene microRNA 8102
2810474C18Rik 11 97744906 to 97745506 600 unclassified gene RIKEN cDNA 2810474C18 gene
Cwc25 11 97745481 to 97766556 21075 - protein coding gene CWC25 spliceosome-associated protein
Cpgi3722 11 97766345 to 97766907 562 CpG island CpG island 3722
Tssr110481 11 97766480 to 97766487 7 - TSS region transcription start site region 110481
Tssr110482 11 97766508 to 97766574 66 - TSS region transcription start site region 110482
Tssr104657 11 97766628 to 97766687 59 + TSS region transcription start site region 104657
Tssr104658 11 97766826 to 97766860 34 + TSS region transcription start site region 104658
Atp5l2-ps 11 97768060 to 97768371 311 + pseudogene ATP synthase, H+ transporting, mitochondrial FO complex, subunit G2, pseudogene
n-TCgca18 11 97769829 to 97769900 71 - tRNA gene nuclear encoded tRNA cysteine 18 (anticodon GCA)
1700001P01Rik 11 97771481 to 97775918 4437 - protein coding gene RIKEN cDNA 1700001P01 gene
Tssr104659 11 97775383 to 97775394 11 + TSS region transcription start site region 104659
Cpgi3723 11 97775475 to 97775850 375 CpG island CpG island 3723
Tssr110483 11 97775876 to 97775899 23 - TSS region transcription start site region 110483
Rpl23 11 97777527 to 97782437 4910 - protein coding gene ribosomal protein L23
Gm27326 11 97780182 to 97780276 94 - snoRNA gene predicted gene, 27326
Tssr3663 11 97780798 to 97780801 3 + TSS region transcription start site region 3663
Snora21 11 97781639 to 97781766 127 - snoRNA gene small nucleolar RNA, H/ACA box 21
Cpgi3724 11 97781775 to 97782743 968 CpG island CpG island 3724
Tssr110484 11 97782377 to 97782399 22 - TSS region transcription start site region 110484
Tssr110485 11 97782409 to 97782420 11 - TSS region transcription start site region 110485
n-TCgca56 11 97797072 to 97797143 71 + tRNA gene nuclear encoded tRNA cysteine 56 (anticodon GCA)
n-TCgca51 11 97798906 to 97798977 71 - tRNA gene nuclear encoded tRNA cysteine 51 (anticodon GCA)
Tssr104660 11 97798995 to 97799021 26 + TSS region transcription start site region 104660
Lasp1 11 97799005 to 97838765 39760 + protein coding gene LIM and SH3 protein 1
Cpgi3725 11 97799017 to 97800593 1576 CpG island CpG island 3725
Tssr104661 11 97799324 to 97799335 11 + TSS region transcription start site region 104661
Tssr104662 11 97799390 to 97799401 11 + TSS region transcription start site region 104662
Tssr104663 11 97799574 to 97799581 7 + TSS region transcription start site region 104663
Tssr104664 11 97799586 to 97799597 11 + TSS region transcription start site region 104664
Tssr104665 11 97799608 to 97799619 11 + TSS region transcription start site region 104665
Tssr104666 11 97799627 to 97799647 20 + TSS region transcription start site region 104666
Tssr104667 11 97799661 to 97799709 48 + TSS region transcription start site region 104667
Tssr104668 11 97799760 to 97799771 11 + TSS region transcription start site region 104668
Tssr104669 11 97799772 to 97799781 9 + TSS region transcription start site region 104669
Tssr104670 11 97801917 to 97801955 38 + TSS region transcription start site region 104670
Tssr104671 11 97806302 to 97806341 39 + TSS region transcription start site region 104671
Tssr104672 11 97806598 to 97806620 22 + TSS region transcription start site region 104672
Tssr104673 11 97806721 to 97806771 50 + TSS region transcription start site region 104673
Tssr104674 11 97806811 to 97806815 4 + TSS region transcription start site region 104674
Tssr104675 11 97815591 to 97815598 7 + TSS region transcription start site region 104675
Tssr104676 11 97815639 to 97815650 11 + TSS region transcription start site region 104676
Tssr104677 11 97815653 to 97815667 14 + TSS region transcription start site region 104677
Tssr104678 11 97815725 to 97815736 11 + TSS region transcription start site region 104678
Tssr104679 11 97825559 to 97825581 22 + TSS region transcription start site region 104679
Tssr110486 11 97829915 to 97829944 29 - TSS region transcription start site region 110486
Tssr104680 11 97830132 to 97830143 11 + TSS region transcription start site region 104680
Tssr104681 11 97833287 to 97833291 4 + TSS region transcription start site region 104681
Tssr104682 11 97836353 to 97836368 15 + TSS region transcription start site region 104682
Tssr104683 11 97838106 to 97838119 13 + TSS region transcription start site region 104683
Tssr104684 11 97838131 to 97838146 15 + TSS region transcription start site region 104684
Tssr104685 11 97838412 to 97838425 13 + TSS region transcription start site region 104685
B230217C12Rik 11 97840780 to 97843043 2263 + protein coding gene RIKEN cDNA B230217C12 gene
Cpgi3726 11 97841217 to 97841426 209 CpG island CpG island 3726
Tssr104686 11 97841282 to 97841359 77 + TSS region transcription start site region 104686
Tssr104687 11 97844517 to 97844531 14 + TSS region transcription start site region 104687
Fbxo47 11 97853826 to 97884154 30328 - protein coding gene F-box protein 47
Tssr110487 11 97855535 to 97855562 27 - TSS region transcription start site region 110487
Cpgi3727 11 97883522 to 97884351 829 CpG island CpG island 3727
Tssr110488 11 97884122 to 97884139 17 - TSS region transcription start site region 110488
Tssr104688 11 97884538 to 97884549 11 + TSS region transcription start site region 104688
Tssr104689 11 97884580 to 97884594 14 + TSS region transcription start site region 104689
Gm11630 11 97884594 to 97893811 9217 + lincRNA gene predicted gene 11630
Tssr104690 11 97921444 to 97921446 2 + TSS region transcription start site region 104690
Cpgi3728 11 97923032 to 97923311 279 CpG island CpG island 3728
Plxdc1 11 97923238 to 97986444 63206 - protein coding gene plexin domain containing 1
Gm22461 11 97941671 to 97941740 69 - miRNA gene predicted gene, 22461
Tssr110489 11 97949637 to 97949658 21 - TSS region transcription start site region 110489
Tssr110490 11 97954956 to 97954972 16 - TSS region transcription start site region 110490
Tssr110491 11 97955268 to 97955310 42 - TSS region transcription start site region 110491
Cpgi3729 11 97966868 to 97967086 218 CpG island CpG island 3729
Gm11633 11 97968792 to 97969235 443 + pseudogene predicted gene 11633
Cpgi3730 11 97985729 to 97987047 1318 CpG island CpG island 3730
Tssr110492 11 97986384 to 97986472 88 - TSS region transcription start site region 110492
Cpgi3731 11 97987680 to 97987990 310 CpG island CpG island 3731
n-TCgca55 11 97988246 to 97988317 71 - tRNA gene nuclear encoded tRNA cysteine 55 (anticodon GCA)
Cpgi3732 11 97988420 to 97988911 491 CpG island CpG island 3732
Tssr110493 11 97988690 to 97988702 12 - TSS region transcription start site region 110493
Tssr110494 11 97988708 to 97988723 15 - TSS region transcription start site region 110494
n-TCgca54 11 97988923 to 97988994 71 - tRNA gene nuclear encoded tRNA cysteine 54 (anticodon GCA)
Arl5c 11 97989578 to 97996181 6603 - protein coding gene ADP-ribosylation factor-like 5C
Cpgi3733 11 97994719 to 97995719 1000 CpG island CpG island 3733
Tssr104691 11 97995050 to 97995058 8 + TSS region transcription start site region 104691
Cpgi3734 11 97995783 to 97996068 285 CpG island CpG island 3734
Tssr110495 11 97995863 to 97995935 72 - TSS region transcription start site region 110495
Tssr110496 11 97996052 to 97996075 23 - TSS region transcription start site region 110496
Tssr110497 11 97996171 to 97996190 19 - TSS region transcription start site region 110497
Tssr110498 11 97998195 to 97998207 12 - TSS region transcription start site region 110498
Tssr110499 11 97999373 to 97999389 16 - TSS region transcription start site region 110499
Tssr104692 11 97999529 to 97999547 18 + TSS region transcription start site region 104692
Tssr104693 11 97999550 to 97999563 13 + TSS region transcription start site region 104693
Tssr104694 11 98000675 to 98000686 11 + TSS region transcription start site region 104694
Cacnb1 11 98001508 to 98022975 21467 - protein coding gene calcium channel, voltage-dependent, beta 1 subunit
Cpgi3735 11 98002958 to 98003274 316 CpG island CpG island 3735
Cpgi3736 11 98004987 to 98005222 235 CpG island CpG island 3736
Tssr110500 11 98013001 to 98013022 21 - TSS region transcription start site region 110500
Tssr110501 11 98018308 to 98018363 55 - TSS region transcription start site region 110501
D11Lis4 11 98019144 to 98019308 164 DNA segment DNA segment, Chr 11, Lisse 4
Cpgi3737 11 98021826 to 98023208 1382 CpG island CpG island 3737
Tssr110502 11 98022594 to 98022671 77 - TSS region transcription start site region 110502
Tssr104695 11 98022701 to 98022730 29 + TSS region transcription start site region 104695
Tssr104696 11 98022792 to 98022802 10 + TSS region transcription start site region 104696
Gm11629 11 98022955 to 98026745 3790 + unclassified non-coding RNA gene predicted gene 11629
Tssr104697 11 98023071 to 98023085 14 + TSS region transcription start site region 104697
Cpgi3738 11 98026480 to 98027552 1072 CpG island CpG island 3738
Tssr110503 11 98026656 to 98026683 27 - TSS region transcription start site region 110503
Tssr104698 11 98026695 to 98026744 49 + TSS region transcription start site region 104698
Rpl19 11 98026710 to 98030492 3782 + protein coding gene ribosomal protein L19
Tssr104699 11 98026918 to 98026931 13 + TSS region transcription start site region 104699
Tssr104700 11 98026939 to 98026968 29 + TSS region transcription start site region 104700