Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:97429040-97719064

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126 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arhgap23 11 97415533 to 97502402 86869 + protein coding gene Rho GTPase activating protein 23
Cpgi3700 11 97434923 to 97435091 168 CpG island CpG island 3700
Tssr110424 11 97435172 to 97435181 9 - TSS region transcription start site region 110424
Tssr104626 11 97435311 to 97435334 23 + TSS region transcription start site region 104626
Tssr104627 11 97435336 to 97435347 11 + TSS region transcription start site region 104627
Tssr104628 11 97435369 to 97435379 10 + TSS region transcription start site region 104628
Tssr3661 11 97435389 to 97435395 6 + TSS region transcription start site region 3661
Tssr110425 11 97435918 to 97435951 33 - TSS region transcription start site region 110425
Tssr104629 11 97436275 to 97436320 45 + TSS region transcription start site region 104629
Tssr104630 11 97438185 to 97438188 3 + TSS region transcription start site region 104630
Cpgi3701 11 97439699 to 97440922 1223 CpG island CpG island 3701
Tssr110426 11 97440054 to 97440089 35 - TSS region transcription start site region 110426
Tssr104631 11 97440153 to 97440176 23 + TSS region transcription start site region 104631
Tssr104632 11 97440179 to 97440205 26 + TSS region transcription start site region 104632
Tssr104633 11 97440219 to 97440238 19 + TSS region transcription start site region 104633
Cpgi3702 11 97450005 to 97450195 190 CpG island CpG island 3702
Tssr104634 11 97450136 to 97450180 44 + TSS region transcription start site region 104634
Cpgi3703 11 97451802 to 97452047 245 CpG island CpG island 3703
Cpgi3704 11 97463187 to 97463616 429 CpG island CpG island 3704
4933428G20Rik 11 97490783 to 97500340 9557 - protein coding gene RIKEN cDNA 4933428G20 gene
Cpgi3705 11 97499914 to 97501455 1541 CpG island CpG island 3705
Tssr110427 11 97500350 to 97500368 18 - TSS region transcription start site region 110427
Srcin1 11 97509340 to 97575126 65786 - protein coding gene SRC kinase signaling inhibitor 1
Tssr110428 11 97511025 to 97511040 15 - TSS region transcription start site region 110428
Gm11611 11 97519612 to 97521895 2283 - sense intronic lncRNA gene predicted gene 11611
Tssr110429 11 97523210 to 97523218 8 - TSS region transcription start site region 110429
Tssr110430 11 97523225 to 97523241 16 - TSS region transcription start site region 110430
Tssr110431 11 97523905 to 97523915 10 - TSS region transcription start site region 110431
Tssr110432 11 97523920 to 97523934 14 - TSS region transcription start site region 110432
Tssr110433 11 97523941 to 97523946 5 - TSS region transcription start site region 110433
Tssr110434 11 97525464 to 97525474 10 - TSS region transcription start site region 110434
Cpgi3706 11 97531672 to 97532264 592 CpG island CpG island 3706
Cpgi3707 11 97532986 to 97533205 219 CpG island CpG island 3707
Tssr110435 11 97533160 to 97533163 3 - TSS region transcription start site region 110435
Cpgi3708 11 97534365 to 97535408 1043 CpG island CpG island 3708
Cpgi3709 11 97536213 to 97537709 1496 CpG island CpG island 3709
Tssr110436 11 97536934 to 97536944 10 - TSS region transcription start site region 110436
Tssr110437 11 97537157 to 97537165 8 - TSS region transcription start site region 110437
Tssr110438 11 97537218 to 97537228 10 - TSS region transcription start site region 110438
Tssr110439 11 97539779 to 97539792 13 - TSS region transcription start site region 110439
Tssr104635 11 97539896 to 97539899 3 + TSS region transcription start site region 104635
Tssr110440 11 97540357 to 97540382 25 - TSS region transcription start site region 110440
Cpgi3710 11 97546008 to 97547523 1515 CpG island CpG island 3710
Tssr110441 11 97547202 to 97547224 22 - TSS region transcription start site region 110441
Cpgi3711 11 97551611 to 97551956 345 CpG island CpG island 3711
Cpgi3712 11 97563859 to 97564066 207 CpG island CpG island 3712
Cpgi3713 11 97573793 to 97574028 235 CpG island CpG island 3713
Tssr110442 11 97574011 to 97574022 11 - TSS region transcription start site region 110442
Tssr110443 11 97574024 to 97574039 15 - TSS region transcription start site region 110443
Tssr110444 11 97574040 to 97574064 24 - TSS region transcription start site region 110444
Tssr110445 11 97574068 to 97574082 14 - TSS region transcription start site region 110445
Cpgi3714 11 97574189 to 97576006 1817 CpG island CpG island 3714
Tssr104636 11 97574320 to 97574333 13 + TSS region transcription start site region 104636
Tssr110446 11 97575156 to 97575208 52 - TSS region transcription start site region 110446
Tssr110447 11 97575210 to 97575236 26 - TSS region transcription start site region 110447
Tssr110448 11 97575239 to 97575256 17 - TSS region transcription start site region 110448
Tssr110449 11 97575272 to 97575275 3 - TSS region transcription start site region 110449
Tssr110450 11 97576334 to 97576355 21 - TSS region transcription start site region 110450
Tssr110451 11 97576441 to 97576449 8 - TSS region transcription start site region 110451
Tssr104637 11 97598503 to 97598524 21 + TSS region transcription start site region 104637
2410003L11Rik 11 97598511 to 97622893 24382 + lncRNA gene RIKEN cDNA 2410003L11 gene
Gm38962 11 97615355 to 97618548 3193 - lncRNA gene predicted gene, 38962
Epop 11 97627389 to 97629702 2313 - protein coding gene elongin BC and polycomb repressive complex 2 associated protein
Cpgi3715 11 97627824 to 97630250 2426 CpG island CpG island 3715
Tssr110452 11 97628610 to 97628623 13 - TSS region transcription start site region 110452
Tssr110453 11 97628634 to 97628647 13 - TSS region transcription start site region 110453
Tssr110454 11 97628902 to 97628918 16 - TSS region transcription start site region 110454
Tssr110455 11 97629259 to 97629280 21 - TSS region transcription start site region 110455
Tssr110456 11 97629294 to 97629305 11 - TSS region transcription start site region 110456
Tssr110457 11 97629366 to 97629381 15 - TSS region transcription start site region 110457
Tssr110458 11 97629669 to 97629676 7 - TSS region transcription start site region 110458
Tssr110459 11 97629685 to 97629715 30 - TSS region transcription start site region 110459
Tssr110460 11 97629717 to 97629745 28 - TSS region transcription start site region 110460
Tssr104638 11 97629841 to 97629886 45 + TSS region transcription start site region 104638
Gm11613 11 97644184 to 97660367 16183 - lncRNA gene predicted gene 11613
Tssr110461 11 97657312 to 97657323 11 - TSS region transcription start site region 110461
Tssr104639 11 97657420 to 97657476 56 + TSS region transcription start site region 104639
Tssr110462 11 97657990 to 97658001 11 - TSS region transcription start site region 110462
Tssr104640 11 97658984 to 97658997 13 + TSS region transcription start site region 104640
Cpgi3716 11 97659612 to 97660974 1362 CpG island CpG island 3716
Tssr104641 11 97659706 to 97659781 75 + TSS region transcription start site region 104641
Tssr104642 11 97659794 to 97659813 19 + TSS region transcription start site region 104642
Gm24158 11 97660257 to 97660327 70 - miRNA gene predicted gene, 24158
Tssr110463 11 97660296 to 97660351 55 - TSS region transcription start site region 110463
Tssr110464 11 97660353 to 97660401 48 - TSS region transcription start site region 110464
Tssr104643 11 97660469 to 97660500 31 + TSS region transcription start site region 104643
Tssr110465 11 97661729 to 97661754 25 - TSS region transcription start site region 110465
Tssr104644 11 97661875 to 97661878 3 + TSS region transcription start site region 104644
Tssr104645 11 97662444 to 97662462 18 + TSS region transcription start site region 104645
Tssr104646 11 97662729 to 97662746 17 + TSS region transcription start site region 104646
Cpgi3717 11 97662772 to 97664315 1543 CpG island CpG island 3717
Tssr104647 11 97663015 to 97663034 19 + TSS region transcription start site region 104647
Tssr104648 11 97663077 to 97663084 7 + TSS region transcription start site region 104648
Tssr104649 11 97663101 to 97663141 40 + TSS region transcription start site region 104649
Tssr104650 11 97663195 to 97663281 86 + TSS region transcription start site region 104650
Tssr104651 11 97663366 to 97663386 20 + TSS region transcription start site region 104651
Mllt6 11 97663412 to 97685461 22049 + protein coding gene myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6
Tssr110466 11 97663569 to 97663578 9 - TSS region transcription start site region 110466
Tssr110467 11 97663673 to 97663703 30 - TSS region transcription start site region 110467
Tssr110468 11 97664756 to 97664766 10 - TSS region transcription start site region 110468
Tssr110469 11 97664803 to 97664832 29 - TSS region transcription start site region 110469
Mir6927 11 97677060 to 97677130 70 + miRNA gene microRNA 6927
Tssr104652 11 97683106 to 97683111 5 + TSS region transcription start site region 104652
Cpgi3718 11 97685569 to 97685970 401 CpG island CpG island 3718
Tssr104653 11 97685794 to 97685845 51 + TSS region transcription start site region 104653
Cisd3 11 97685826 to 97688621 2795 + protein coding gene CDGSH iron sulfur domain 3
Tssr104654 11 97685903 to 97685966 63 + TSS region transcription start site region 104654
Tssr110470 11 97687206 to 97687230 24 - TSS region transcription start site region 110470
Pcgf2 11 97688823 to 97700497 11674 - protein coding gene polycomb group ring finger 2
Tssr110471 11 97690108 to 97690165 57 - TSS region transcription start site region 110471
Tssr110472 11 97690343 to 97690358 15 - TSS region transcription start site region 110472
Cpgi3719 11 97698596 to 97701156 2560 CpG island CpG island 3719
Tssr110473 11 97699555 to 97699572 17 - TSS region transcription start site region 110473
Tssr110474 11 97699634 to 97699698 64 - TSS region transcription start site region 110474
Tssr110475 11 97699700 to 97699709 9 - TSS region transcription start site region 110475
Tssr110476 11 97700327 to 97700349 22 - TSS region transcription start site region 110476
Cpgi3720 11 97702356 to 97703697 1341 CpG island CpG island 3720
n-TNgtt8 11 97702449 to 97702522 73 - tRNA gene nuclear encoded tRNA asparagine 8 (anticodon GTT)
Tssr104655 11 97703394 to 97703455 61 + TSS region transcription start site region 104655
Psmb3 11 97703434 to 97713500 10066 + protein coding gene proteasome (prosome, macropain) subunit, beta type 3
D11Mit145.2 11 97714590 to 97714701 111 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 145.2
D11Mit145 11 97714679 to 97714829 150 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 145
Pip4k2b 11 97715157 to 97744704 29547 - protein coding gene phosphatidylinositol-5-phosphate 4-kinase, type II, beta
Tssr110477 11 97716907 to 97716923 16 - TSS region transcription start site region 110477
Tssr110478 11 97718409 to 97718420 11 - TSS region transcription start site region 110478
Tssr110479 11 97718437 to 97718451 14 - TSS region transcription start site region 110479