Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:97286345-98246907

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321 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr110415 11 97287748 to 97287752 4 - TSS region transcription start site region 110415
Gm31005 11 97301331 to 97311190 9859 - lncRNA gene predicted gene, 31005
Tssr110416 11 97301732 to 97301736 4 - TSS region transcription start site region 110416
Tssr110417 11 97309453 to 97309468 15 - TSS region transcription start site region 110417
Tssr104608 11 97309587 to 97309625 38 + TSS region transcription start site region 104608
Tssr104609 11 97309645 to 97309659 14 + TSS region transcription start site region 104609
Tssr104610 11 97309680 to 97309700 20 + TSS region transcription start site region 104610
Cpgi3691 11 97309900 to 97310407 507 CpG island CpG island 3691
Tssr110418 11 97310027 to 97310060 33 - TSS region transcription start site region 110418
Tssr104611 11 97310216 to 97310225 9 + TSS region transcription start site region 104611
Tssr104612 11 97310254 to 97310278 24 + TSS region transcription start site region 104612
Tssr110419 11 97310273 to 97310289 16 - TSS region transcription start site region 110419
Tssr110420 11 97310290 to 97310307 17 - TSS region transcription start site region 110420
Tssr110421 11 97310318 to 97310335 17 - TSS region transcription start site region 110421
Cpgi3692 11 97315491 to 97316023 532 CpG island CpG island 3692
Tssr110422 11 97315622 to 97315634 12 - TSS region transcription start site region 110422
Mrpl45 11 97315716 to 97329920 14204 + protein coding gene mitochondrial ribosomal protein L45
Tssr104613 11 97315839 to 97315870 31 + TSS region transcription start site region 104613
Gm11594 11 97322328 to 97322489 161 - pseudogene predicted gene 11594
Tssr104614 11 97329540 to 97329545 5 + TSS region transcription start site region 104614
Gpr179 11 97332109 to 97352077 19968 - protein coding gene G protein-coupled receptor 179
Cpgi3693 11 97338753 to 97339234 481 CpG island CpG island 3693
Cpgi3694 11 97343881 to 97344248 367 CpG island CpG island 3694
Tssr110423 11 97352348 to 97352363 15 - TSS region transcription start site region 110423
Cpgi3695 11 97361893 to 97363582 1689 CpG island CpG island 3695
Tssr104615 11 97362205 to 97362254 49 + TSS region transcription start site region 104615
Tssr104616 11 97362275 to 97362313 38 + TSS region transcription start site region 104616
Tssr104617 11 97362320 to 97362332 12 + TSS region transcription start site region 104617
Tssr104618 11 97362372 to 97362385 13 + TSS region transcription start site region 104618
Tssr104619 11 97362396 to 97362464 68 + TSS region transcription start site region 104619
Socs7 11 97362551 to 97398542 35991 + protein coding gene suppressor of cytokine signaling 7
Tssr104620 11 97373059 to 97373069 10 + TSS region transcription start site region 104620
Tssr104621 11 97376478 to 97376483 5 + TSS region transcription start site region 104621
Cpgi3696 11 97400261 to 97400727 466 CpG island CpG island 3696
Cpgi3697 11 97403910 to 97405151 1241 CpG island CpG island 3697
Tssr104622 11 97404388 to 97404440 52 + TSS region transcription start site region 104622
Cpgi3698 11 97415499 to 97416282 783 CpG island CpG island 3698
Tssr104623 11 97415527 to 97415538 11 + TSS region transcription start site region 104623
Arhgap23 11 97415533 to 97502402 86869 + protein coding gene Rho GTPase activating protein 23
Tssr104624 11 97415554 to 97415576 22 + TSS region transcription start site region 104624
Tssr104625 11 97415577 to 97415597 20 + TSS region transcription start site region 104625
Cpgi3699 11 97428098 to 97428587 489 CpG island CpG island 3699
Cpgi3700 11 97434923 to 97435091 168 CpG island CpG island 3700
Tssr110424 11 97435172 to 97435181 9 - TSS region transcription start site region 110424
Tssr104626 11 97435311 to 97435334 23 + TSS region transcription start site region 104626
Tssr104627 11 97435336 to 97435347 11 + TSS region transcription start site region 104627
Tssr104628 11 97435369 to 97435379 10 + TSS region transcription start site region 104628
Tssr3661 11 97435389 to 97435395 6 + TSS region transcription start site region 3661
Tssr110425 11 97435918 to 97435951 33 - TSS region transcription start site region 110425
Tssr104629 11 97436275 to 97436320 45 + TSS region transcription start site region 104629
Tssr104630 11 97438185 to 97438188 3 + TSS region transcription start site region 104630
Cpgi3701 11 97439699 to 97440922 1223 CpG island CpG island 3701
Tssr110426 11 97440054 to 97440089 35 - TSS region transcription start site region 110426
Tssr104631 11 97440153 to 97440176 23 + TSS region transcription start site region 104631
Tssr104632 11 97440179 to 97440205 26 + TSS region transcription start site region 104632
Tssr104633 11 97440219 to 97440238 19 + TSS region transcription start site region 104633
Cpgi3702 11 97450005 to 97450195 190 CpG island CpG island 3702
Tssr104634 11 97450136 to 97450180 44 + TSS region transcription start site region 104634
Cpgi3703 11 97451802 to 97452047 245 CpG island CpG island 3703
Cpgi3704 11 97463187 to 97463616 429 CpG island CpG island 3704
4933428G20Rik 11 97490783 to 97500340 9557 - protein coding gene RIKEN cDNA 4933428G20 gene
Cpgi3705 11 97499914 to 97501455 1541 CpG island CpG island 3705
Tssr110427 11 97500350 to 97500368 18 - TSS region transcription start site region 110427
Srcin1 11 97509340 to 97575126 65786 - protein coding gene SRC kinase signaling inhibitor 1
Tssr110428 11 97511025 to 97511040 15 - TSS region transcription start site region 110428
Gm11611 11 97519612 to 97521895 2283 - sense intronic lncRNA gene predicted gene 11611
Tssr110429 11 97523210 to 97523218 8 - TSS region transcription start site region 110429
Tssr110430 11 97523225 to 97523241 16 - TSS region transcription start site region 110430
Tssr110431 11 97523905 to 97523915 10 - TSS region transcription start site region 110431
Tssr110432 11 97523920 to 97523934 14 - TSS region transcription start site region 110432
Tssr110433 11 97523941 to 97523946 5 - TSS region transcription start site region 110433
Tssr110434 11 97525464 to 97525474 10 - TSS region transcription start site region 110434
Cpgi3706 11 97531672 to 97532264 592 CpG island CpG island 3706
Cpgi3707 11 97532986 to 97533205 219 CpG island CpG island 3707
Tssr110435 11 97533160 to 97533163 3 - TSS region transcription start site region 110435
Cpgi3708 11 97534365 to 97535408 1043 CpG island CpG island 3708
Cpgi3709 11 97536213 to 97537709 1496 CpG island CpG island 3709
Tssr110436 11 97536934 to 97536944 10 - TSS region transcription start site region 110436
Tssr110437 11 97537157 to 97537165 8 - TSS region transcription start site region 110437
Tssr110438 11 97537218 to 97537228 10 - TSS region transcription start site region 110438
Tssr110439 11 97539779 to 97539792 13 - TSS region transcription start site region 110439
Tssr104635 11 97539896 to 97539899 3 + TSS region transcription start site region 104635
Tssr110440 11 97540357 to 97540382 25 - TSS region transcription start site region 110440
Cpgi3710 11 97546008 to 97547523 1515 CpG island CpG island 3710
Tssr110441 11 97547202 to 97547224 22 - TSS region transcription start site region 110441
Cpgi3711 11 97551611 to 97551956 345 CpG island CpG island 3711
Cpgi3712 11 97563859 to 97564066 207 CpG island CpG island 3712
Cpgi3713 11 97573793 to 97574028 235 CpG island CpG island 3713
Tssr110442 11 97574011 to 97574022 11 - TSS region transcription start site region 110442
Tssr110443 11 97574024 to 97574039 15 - TSS region transcription start site region 110443
Tssr110444 11 97574040 to 97574064 24 - TSS region transcription start site region 110444
Tssr110445 11 97574068 to 97574082 14 - TSS region transcription start site region 110445
Cpgi3714 11 97574189 to 97576006 1817 CpG island CpG island 3714
Tssr104636 11 97574320 to 97574333 13 + TSS region transcription start site region 104636
Tssr110446 11 97575156 to 97575208 52 - TSS region transcription start site region 110446
Tssr110447 11 97575210 to 97575236 26 - TSS region transcription start site region 110447
Tssr110448 11 97575239 to 97575256 17 - TSS region transcription start site region 110448
Tssr110449 11 97575272 to 97575275 3 - TSS region transcription start site region 110449
Tssr110450 11 97576334 to 97576355 21 - TSS region transcription start site region 110450
Tssr110451 11 97576441 to 97576449 8 - TSS region transcription start site region 110451
Tssr104637 11 97598503 to 97598524 21 + TSS region transcription start site region 104637
2410003L11Rik 11 97598511 to 97622893 24382 + lncRNA gene RIKEN cDNA 2410003L11 gene
Gm38962 11 97615355 to 97618548 3193 - lncRNA gene predicted gene, 38962
Epop 11 97627389 to 97629702 2313 - protein coding gene elongin BC and polycomb repressive complex 2 associated protein
Cpgi3715 11 97627824 to 97630250 2426 CpG island CpG island 3715
Tssr110452 11 97628610 to 97628623 13 - TSS region transcription start site region 110452
Tssr110453 11 97628634 to 97628647 13 - TSS region transcription start site region 110453
Tssr110454 11 97628902 to 97628918 16 - TSS region transcription start site region 110454
Tssr110455 11 97629259 to 97629280 21 - TSS region transcription start site region 110455
Tssr110456 11 97629294 to 97629305 11 - TSS region transcription start site region 110456
Tssr110457 11 97629366 to 97629381 15 - TSS region transcription start site region 110457
Tssr110458 11 97629669 to 97629676 7 - TSS region transcription start site region 110458
Tssr110459 11 97629685 to 97629715 30 - TSS region transcription start site region 110459
Tssr110460 11 97629717 to 97629745 28 - TSS region transcription start site region 110460
Tssr104638 11 97629841 to 97629886 45 + TSS region transcription start site region 104638
Gm11613 11 97644184 to 97660367 16183 - lncRNA gene predicted gene 11613
Tssr110461 11 97657312 to 97657323 11 - TSS region transcription start site region 110461
Tssr104639 11 97657420 to 97657476 56 + TSS region transcription start site region 104639
Tssr110462 11 97657990 to 97658001 11 - TSS region transcription start site region 110462
Tssr104640 11 97658984 to 97658997 13 + TSS region transcription start site region 104640
Cpgi3716 11 97659612 to 97660974 1362 CpG island CpG island 3716
Tssr104641 11 97659706 to 97659781 75 + TSS region transcription start site region 104641
Tssr104642 11 97659794 to 97659813 19 + TSS region transcription start site region 104642
Gm24158 11 97660257 to 97660327 70 - miRNA gene predicted gene, 24158
Tssr110463 11 97660296 to 97660351 55 - TSS region transcription start site region 110463
Tssr110464 11 97660353 to 97660401 48 - TSS region transcription start site region 110464
Tssr104643 11 97660469 to 97660500 31 + TSS region transcription start site region 104643
Tssr110465 11 97661729 to 97661754 25 - TSS region transcription start site region 110465
Tssr104644 11 97661875 to 97661878 3 + TSS region transcription start site region 104644
Tssr104645 11 97662444 to 97662462 18 + TSS region transcription start site region 104645
Tssr104646 11 97662729 to 97662746 17 + TSS region transcription start site region 104646
Cpgi3717 11 97662772 to 97664315 1543 CpG island CpG island 3717
Tssr104647 11 97663015 to 97663034 19 + TSS region transcription start site region 104647
Tssr104648 11 97663077 to 97663084 7 + TSS region transcription start site region 104648
Tssr104649 11 97663101 to 97663141 40 + TSS region transcription start site region 104649
Tssr104650 11 97663195 to 97663281 86 + TSS region transcription start site region 104650
Tssr104651 11 97663366 to 97663386 20 + TSS region transcription start site region 104651
Mllt6 11 97663412 to 97685461 22049 + protein coding gene myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6
Tssr110466 11 97663569 to 97663578 9 - TSS region transcription start site region 110466
Tssr110467 11 97663673 to 97663703 30 - TSS region transcription start site region 110467
Tssr110468 11 97664756 to 97664766 10 - TSS region transcription start site region 110468
Tssr110469 11 97664803 to 97664832 29 - TSS region transcription start site region 110469
Mir6927 11 97677060 to 97677130 70 + miRNA gene microRNA 6927
Tssr104652 11 97683106 to 97683111 5 + TSS region transcription start site region 104652
Cpgi3718 11 97685569 to 97685970 401 CpG island CpG island 3718
Tssr104653 11 97685794 to 97685845 51 + TSS region transcription start site region 104653
Cisd3 11 97685826 to 97688621 2795 + protein coding gene CDGSH iron sulfur domain 3
Tssr104654 11 97685903 to 97685966 63 + TSS region transcription start site region 104654
Tssr110470 11 97687206 to 97687230 24 - TSS region transcription start site region 110470
Pcgf2 11 97688823 to 97700497 11674 - protein coding gene polycomb group ring finger 2
Tssr110471 11 97690108 to 97690165 57 - TSS region transcription start site region 110471
Tssr110472 11 97690343 to 97690358 15 - TSS region transcription start site region 110472
Cpgi3719 11 97698596 to 97701156 2560 CpG island CpG island 3719
Tssr110473 11 97699555 to 97699572 17 - TSS region transcription start site region 110473
Tssr110474 11 97699634 to 97699698 64 - TSS region transcription start site region 110474
Tssr110475 11 97699700 to 97699709 9 - TSS region transcription start site region 110475
Tssr110476 11 97700327 to 97700349 22 - TSS region transcription start site region 110476
Cpgi3720 11 97702356 to 97703697 1341 CpG island CpG island 3720
n-TNgtt8 11 97702449 to 97702522 73 - tRNA gene nuclear encoded tRNA asparagine 8 (anticodon GTT)
Tssr104655 11 97703394 to 97703455 61 + TSS region transcription start site region 104655
Psmb3 11 97703434 to 97713500 10066 + protein coding gene proteasome (prosome, macropain) subunit, beta type 3
D11Mit145.2 11 97714590 to 97714701 111 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 145.2
D11Mit145 11 97714679 to 97714829 150 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 145
Pip4k2b 11 97715157 to 97744704 29547 - protein coding gene phosphatidylinositol-5-phosphate 4-kinase, type II, beta
Tssr110477 11 97716907 to 97716923 16 - TSS region transcription start site region 110477
Tssr110478 11 97718409 to 97718420 11 - TSS region transcription start site region 110478
Tssr110479 11 97718437 to 97718451 14 - TSS region transcription start site region 110479
Gm11614 11 97723651 to 97725711 2060 + antisense lncRNA gene predicted gene 11614
Tssr104656 11 97726805 to 97726825 20 + TSS region transcription start site region 104656
Tssr3662 11 97728359 to 97728408 49 - TSS region transcription start site region 3662
Cpgi3721 11 97743873 to 97745495 1622 CpG island CpG island 3721
Tssr110480 11 97744659 to 97744774 115 - TSS region transcription start site region 110480
Mir8102 11 97744897 to 97745035 138 + miRNA gene microRNA 8102
2810474C18Rik 11 97744906 to 97745506 600 unclassified gene RIKEN cDNA 2810474C18 gene
Cwc25 11 97745481 to 97766556 21075 - protein coding gene CWC25 spliceosome-associated protein
Cpgi3722 11 97766345 to 97766907 562 CpG island CpG island 3722
Tssr110481 11 97766480 to 97766487 7 - TSS region transcription start site region 110481
Tssr110482 11 97766508 to 97766574 66 - TSS region transcription start site region 110482
Tssr104657 11 97766628 to 97766687 59 + TSS region transcription start site region 104657
Tssr104658 11 97766826 to 97766860 34 + TSS region transcription start site region 104658
Atp5l2-ps 11 97768060 to 97768371 311 + pseudogene ATP synthase, H+ transporting, mitochondrial FO complex, subunit G2, pseudogene
n-TCgca18 11 97769829 to 97769900 71 - tRNA gene nuclear encoded tRNA cysteine 18 (anticodon GCA)
1700001P01Rik 11 97771481 to 97775918 4437 - protein coding gene RIKEN cDNA 1700001P01 gene
Tssr104659 11 97775383 to 97775394 11 + TSS region transcription start site region 104659
Cpgi3723 11 97775475 to 97775850 375 CpG island CpG island 3723
Tssr110483 11 97775876 to 97775899 23 - TSS region transcription start site region 110483
Rpl23 11 97777527 to 97782437 4910 - protein coding gene ribosomal protein L23
Gm27326 11 97780182 to 97780276 94 - snoRNA gene predicted gene, 27326
Tssr3663 11 97780798 to 97780801 3 + TSS region transcription start site region 3663
Snora21 11 97781639 to 97781766 127 - snoRNA gene small nucleolar RNA, H/ACA box 21
Cpgi3724 11 97781775 to 97782743 968 CpG island CpG island 3724
Tssr110484 11 97782377 to 97782399 22 - TSS region transcription start site region 110484
Tssr110485 11 97782409 to 97782420 11 - TSS region transcription start site region 110485
n-TCgca56 11 97797072 to 97797143 71 + tRNA gene nuclear encoded tRNA cysteine 56 (anticodon GCA)
n-TCgca51 11 97798906 to 97798977 71 - tRNA gene nuclear encoded tRNA cysteine 51 (anticodon GCA)
Tssr104660 11 97798995 to 97799021 26 + TSS region transcription start site region 104660
Lasp1 11 97799005 to 97838765 39760 + protein coding gene LIM and SH3 protein 1
Cpgi3725 11 97799017 to 97800593 1576 CpG island CpG island 3725
Tssr104661 11 97799324 to 97799335 11 + TSS region transcription start site region 104661
Tssr104662 11 97799390 to 97799401 11 + TSS region transcription start site region 104662