Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:96970332-97590407

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196 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nidd6k 11 19174204 to 97007000 77832796 QTL Nidd6 on KK-A
Alo1 11 81775249 to 97007000 15231751 heritable phenotypic marker alopecia 1
Sp2 11 96953332 to 96982129 28797 - protein coding gene Sp2 transcription factor
Cpgi3677 11 96977064 to 96978372 1308 CpG island CpG island 3677
Tssr110377 11 96977290 to 96977328 38 - TSS region transcription start site region 110377
Tssr110378 11 96977345 to 96977384 39 - TSS region transcription start site region 110378
Tssr110379 11 96977660 to 96977693 33 - TSS region transcription start site region 110379
Gm30809 11 96977701 to 96984111 6410 + lncRNA gene predicted gene, 30809
Cpgi3678 11 96988016 to 96988261 245 CpG island CpG island 3678
Tssr104590 11 96988072 to 96988082 10 + TSS region transcription start site region 104590
Tssr110380 11 96988486 to 96988488 2 - TSS region transcription start site region 110380
Cpgi3679 11 96997223 to 96997700 477 CpG island CpG island 3679
D11Mit67 11 97006867 to 97007000 133 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 67
Estq3 11 97006867 to 99436202 2429335 QTL estradiol regulated response QTL 3
Sp6 11 97013569 to 97024739 11170 + protein coding gene trans-acting transcription factor 6
Cpgi3680 11 97018152 to 97019822 1670 CpG island CpG island 3680
Tssr104591 11 97018758 to 97018765 7 + TSS region transcription start site region 104591
Tssr104592 11 97018819 to 97018827 8 + TSS region transcription start site region 104592
Gm11532 11 97020508 to 97026248 5740 - lncRNA gene predicted gene 11532
Cpgi3681 11 97021347 to 97022726 1379 CpG island CpG island 3681
Tssr110381 11 97026136 to 97026147 11 - TSS region transcription start site region 110381
Tssr110382 11 97026155 to 97026179 24 - TSS region transcription start site region 110382
Cpgi3682 11 97029844 to 97030518 674 CpG island CpG island 3682
Tssr104593 11 97029925 to 97029997 72 + TSS region transcription start site region 104593
Scrn2 11 97029952 to 97033960 4008 + protein coding gene secernin 2
Tssr104594 11 97030130 to 97030173 43 + TSS region transcription start site region 104594
Lrrc46 11 97034602 to 97041369 6767 - protein coding gene leucine rich repeat containing 46
Gm11533 11 97037007 to 97037483 476 + pseudogene predicted gene 11533
Tssr104595 11 97041073 to 97041110 37 + TSS region transcription start site region 104595
Tssr110383 11 97041307 to 97041353 46 - TSS region transcription start site region 110383
Cpgi3683 11 97041355 to 97041882 527 CpG island CpG island 3683
Tssr110384 11 97041364 to 97041392 28 - TSS region transcription start site region 110384
Tssr110385 11 97041395 to 97041402 7 - TSS region transcription start site region 110385
Tssr110386 11 97041424 to 97041436 12 - TSS region transcription start site region 110386
Tssr104596 11 97041554 to 97041563 9 + TSS region transcription start site region 104596
Mrpl10 11 97041567 to 97049213 7646 + protein coding gene mitochondrial ribosomal protein L10
Tssr104597 11 97041569 to 97041602 33 + TSS region transcription start site region 104597
Tssr104598 11 97044524 to 97044528 4 + TSS region transcription start site region 104598
Tssr110387 11 97048367 to 97048385 18 - TSS region transcription start site region 110387
Tssr110388 11 97048395 to 97048415 20 - TSS region transcription start site region 110388
Gm11574 11 97048691 to 97051432 2741 - unclassified non-coding RNA gene predicted gene 11574
Tssr104599 11 97050594 to 97050630 36 + TSS region transcription start site region 104599
Osbpl7 11 97050628 to 97068904 18276 + protein coding gene oxysterol binding protein-like 7
Cpgi3684 11 97050651 to 97050951 300 CpG island CpG island 3684
Tssr104600 11 97050811 to 97050856 45 + TSS region transcription start site region 104600
Tssr104601 11 97050857 to 97050877 20 + TSS region transcription start site region 104601
Mir8103 11 97063768 to 97063874 106 + miRNA gene microRNA 8103
Tssr104602 11 97066838 to 97066858 20 + TSS region transcription start site region 104602
D11Mit222 11 97072666 to 97072770 104 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 222
Gm11573 11 97096933 to 97097326 393 + pseudogene predicted gene 11573
Tbx21 11 97098071 to 97115331 17260 - protein coding gene T-box 21
Cpgi3685 11 97114338 to 97116129 1791 CpG island CpG island 3685
Tssr110389 11 97114533 to 97114536 3 - TSS region transcription start site region 110389
Tssr110390 11 97115327 to 97115332 5 - TSS region transcription start site region 110390
Gm11572 11 97116796 to 97116915 119 - pseudogene predicted gene 11572
Tssr110391 11 97126950 to 97126995 45 - TSS region transcription start site region 110391
Cpgi3686 11 97127044 to 97127483 439 CpG island CpG island 3686
Tbkbp1 11 97136171 to 97151490 15319 - protein coding gene TBK1 binding protein 1
Cpgi3687 11 97138468 to 97139678 1210 CpG island CpG island 3687
Tssr110392 11 97142282 to 97142286 4 - TSS region transcription start site region 110392
Tssr110393 11 97142926 to 97142930 4 - TSS region transcription start site region 110393
Mir7235 11 97146364 to 97146419 55 - miRNA gene microRNA 7235
Cpgi3688 11 97149858 to 97152063 2205 CpG island CpG island 3688
Tssr110394 11 97150025 to 97150084 59 - TSS region transcription start site region 110394
Kpnb1 11 97159714 to 97187881 28167 - protein coding gene karyopherin (importin) beta 1
Gm11583 11 97160990 to 97161675 685 + antisense lncRNA gene predicted gene 11583
Tssr104603 11 97161526 to 97161539 13 + TSS region transcription start site region 104603
Tssr110395 11 97162006 to 97162010 4 - TSS region transcription start site region 110395
Tssr110396 11 97182657 to 97182661 4 - TSS region transcription start site region 110396
Cpgi3689 11 97186867 to 97188910 2043 CpG island CpG island 3689
Tssr110397 11 97187592 to 97187616 24 - TSS region transcription start site region 110397
Tssr110398 11 97187648 to 97187680 32 - TSS region transcription start site region 110398
Tssr104604 11 97187700 to 97187711 11 + TSS region transcription start site region 104604
Tssr110399 11 97187815 to 97187835 20 - TSS region transcription start site region 110399
Tssr110400 11 97187836 to 97187850 14 - TSS region transcription start site region 110400
Tssr110401 11 97187872 to 97187926 54 - TSS region transcription start site region 110401
Tssr110402 11 97187930 to 97187948 18 - TSS region transcription start site region 110402
Tssr110403 11 97188070 to 97188072 2 - TSS region transcription start site region 110403
Tssr104605 11 97188468 to 97188481 13 + TSS region transcription start site region 104605
Tssr104606 11 97188554 to 97188580 26 + TSS region transcription start site region 104606
Npepps 11 97205842 to 97280638 74796 - protein coding gene aminopeptidase puromycin sensitive
Tssr110404 11 97207001 to 97207017 16 - TSS region transcription start site region 110404
Tssr110405 11 97237877 to 97237881 4 - TSS region transcription start site region 110405
Tssr110406 11 97239712 to 97239717 5 - TSS region transcription start site region 110406
Cpgi3690 11 97279552 to 97281353 1801 CpG island CpG island 3690
Tssr110407 11 97279613 to 97279634 21 - TSS region transcription start site region 110407
Tssr104607 11 97279739 to 97279758 19 + TSS region transcription start site region 104607
Tssr110408 11 97280332 to 97280407 75 - TSS region transcription start site region 110408
Tssr110409 11 97280432 to 97280444 12 - TSS region transcription start site region 110409
Tssr110410 11 97280454 to 97280465 11 - TSS region transcription start site region 110410
Tssr110411 11 97280470 to 97280606 136 - TSS region transcription start site region 110411
Tssr110412 11 97280626 to 97280650 24 - TSS region transcription start site region 110412
Gm11592 11 97280694 to 97283310 2616 + antisense lncRNA gene predicted gene 11592
Tssr110413 11 97282307 to 97282316 9 - TSS region transcription start site region 110413
Tssr110414 11 97284714 to 97284750 36 - TSS region transcription start site region 110414
Tssr110415 11 97287748 to 97287752 4 - TSS region transcription start site region 110415
Gm31005 11 97301331 to 97311190 9859 - lncRNA gene predicted gene, 31005
Tssr110416 11 97301732 to 97301736 4 - TSS region transcription start site region 110416
Tssr110417 11 97309453 to 97309468 15 - TSS region transcription start site region 110417
Tssr104608 11 97309587 to 97309625 38 + TSS region transcription start site region 104608
Tssr104609 11 97309645 to 97309659 14 + TSS region transcription start site region 104609
Tssr104610 11 97309680 to 97309700 20 + TSS region transcription start site region 104610
Cpgi3691 11 97309900 to 97310407 507 CpG island CpG island 3691
Tssr110418 11 97310027 to 97310060 33 - TSS region transcription start site region 110418
Tssr104611 11 97310216 to 97310225 9 + TSS region transcription start site region 104611
Tssr104612 11 97310254 to 97310278 24 + TSS region transcription start site region 104612
Tssr110419 11 97310273 to 97310289 16 - TSS region transcription start site region 110419
Tssr110420 11 97310290 to 97310307 17 - TSS region transcription start site region 110420
Tssr110421 11 97310318 to 97310335 17 - TSS region transcription start site region 110421
Cpgi3692 11 97315491 to 97316023 532 CpG island CpG island 3692
Tssr110422 11 97315622 to 97315634 12 - TSS region transcription start site region 110422
Mrpl45 11 97315716 to 97329920 14204 + protein coding gene mitochondrial ribosomal protein L45
Tssr104613 11 97315839 to 97315870 31 + TSS region transcription start site region 104613
Gm11594 11 97322328 to 97322489 161 - pseudogene predicted gene 11594
Tssr104614 11 97329540 to 97329545 5 + TSS region transcription start site region 104614
Gpr179 11 97332109 to 97352077 19968 - protein coding gene G protein-coupled receptor 179
Cpgi3693 11 97338753 to 97339234 481 CpG island CpG island 3693
Cpgi3694 11 97343881 to 97344248 367 CpG island CpG island 3694
Tssr110423 11 97352348 to 97352363 15 - TSS region transcription start site region 110423
Cpgi3695 11 97361893 to 97363582 1689 CpG island CpG island 3695
Tssr104615 11 97362205 to 97362254 49 + TSS region transcription start site region 104615
Tssr104616 11 97362275 to 97362313 38 + TSS region transcription start site region 104616
Tssr104617 11 97362320 to 97362332 12 + TSS region transcription start site region 104617
Tssr104618 11 97362372 to 97362385 13 + TSS region transcription start site region 104618
Tssr104619 11 97362396 to 97362464 68 + TSS region transcription start site region 104619
Socs7 11 97362551 to 97398542 35991 + protein coding gene suppressor of cytokine signaling 7
Tssr104620 11 97373059 to 97373069 10 + TSS region transcription start site region 104620
Tssr104621 11 97376478 to 97376483 5 + TSS region transcription start site region 104621
Cpgi3696 11 97400261 to 97400727 466 CpG island CpG island 3696
Cpgi3697 11 97403910 to 97405151 1241 CpG island CpG island 3697
Tssr104622 11 97404388 to 97404440 52 + TSS region transcription start site region 104622
Cpgi3698 11 97415499 to 97416282 783 CpG island CpG island 3698
Tssr104623 11 97415527 to 97415538 11 + TSS region transcription start site region 104623
Arhgap23 11 97415533 to 97502402 86869 + protein coding gene Rho GTPase activating protein 23
Tssr104624 11 97415554 to 97415576 22 + TSS region transcription start site region 104624
Tssr104625 11 97415577 to 97415597 20 + TSS region transcription start site region 104625
Cpgi3699 11 97428098 to 97428587 489 CpG island CpG island 3699
Cpgi3700 11 97434923 to 97435091 168 CpG island CpG island 3700
Tssr110424 11 97435172 to 97435181 9 - TSS region transcription start site region 110424
Tssr104626 11 97435311 to 97435334 23 + TSS region transcription start site region 104626
Tssr104627 11 97435336 to 97435347 11 + TSS region transcription start site region 104627
Tssr104628 11 97435369 to 97435379 10 + TSS region transcription start site region 104628
Tssr3661 11 97435389 to 97435395 6 + TSS region transcription start site region 3661
Tssr110425 11 97435918 to 97435951 33 - TSS region transcription start site region 110425
Tssr104629 11 97436275 to 97436320 45 + TSS region transcription start site region 104629
Tssr104630 11 97438185 to 97438188 3 + TSS region transcription start site region 104630
Cpgi3701 11 97439699 to 97440922 1223 CpG island CpG island 3701
Tssr110426 11 97440054 to 97440089 35 - TSS region transcription start site region 110426
Tssr104631 11 97440153 to 97440176 23 + TSS region transcription start site region 104631
Tssr104632 11 97440179 to 97440205 26 + TSS region transcription start site region 104632
Tssr104633 11 97440219 to 97440238 19 + TSS region transcription start site region 104633
Cpgi3702 11 97450005 to 97450195 190 CpG island CpG island 3702
Tssr104634 11 97450136 to 97450180 44 + TSS region transcription start site region 104634
Cpgi3703 11 97451802 to 97452047 245 CpG island CpG island 3703
Cpgi3704 11 97463187 to 97463616 429 CpG island CpG island 3704
4933428G20Rik 11 97490783 to 97500340 9557 - protein coding gene RIKEN cDNA 4933428G20 gene
Cpgi3705 11 97499914 to 97501455 1541 CpG island CpG island 3705
Tssr110427 11 97500350 to 97500368 18 - TSS region transcription start site region 110427
Srcin1 11 97509340 to 97575126 65786 - protein coding gene SRC kinase signaling inhibitor 1
Tssr110428 11 97511025 to 97511040 15 - TSS region transcription start site region 110428
Gm11611 11 97519612 to 97521895 2283 - sense intronic lncRNA gene predicted gene 11611
Tssr110429 11 97523210 to 97523218 8 - TSS region transcription start site region 110429
Tssr110430 11 97523225 to 97523241 16 - TSS region transcription start site region 110430
Tssr110431 11 97523905 to 97523915 10 - TSS region transcription start site region 110431
Tssr110432 11 97523920 to 97523934 14 - TSS region transcription start site region 110432
Tssr110433 11 97523941 to 97523946 5 - TSS region transcription start site region 110433
Tssr110434 11 97525464 to 97525474 10 - TSS region transcription start site region 110434
Cpgi3706 11 97531672 to 97532264 592 CpG island CpG island 3706
Cpgi3707 11 97532986 to 97533205 219 CpG island CpG island 3707
Tssr110435 11 97533160 to 97533163 3 - TSS region transcription start site region 110435
Cpgi3708 11 97534365 to 97535408 1043 CpG island CpG island 3708
Cpgi3709 11 97536213 to 97537709 1496 CpG island CpG island 3709
Tssr110436 11 97536934 to 97536944 10 - TSS region transcription start site region 110436
Tssr110437 11 97537157 to 97537165 8 - TSS region transcription start site region 110437
Tssr110438 11 97537218 to 97537228 10 - TSS region transcription start site region 110438
Tssr110439 11 97539779 to 97539792 13 - TSS region transcription start site region 110439
Tssr104635 11 97539896 to 97539899 3 + TSS region transcription start site region 104635
Tssr110440 11 97540357 to 97540382 25 - TSS region transcription start site region 110440
Cpgi3710 11 97546008 to 97547523 1515 CpG island CpG island 3710
Tssr110441 11 97547202 to 97547224 22 - TSS region transcription start site region 110441
Cpgi3711 11 97551611 to 97551956 345 CpG island CpG island 3711
Cpgi3712 11 97563859 to 97564066 207 CpG island CpG island 3712
Cpgi3713 11 97573793 to 97574028 235 CpG island CpG island 3713
Tssr110442 11 97574011 to 97574022 11 - TSS region transcription start site region 110442
Tssr110443 11 97574024 to 97574039 15 - TSS region transcription start site region 110443
Tssr110444 11 97574040 to 97574064 24 - TSS region transcription start site region 110444
Tssr110445 11 97574068 to 97574082 14 - TSS region transcription start site region 110445
Cpgi3714 11 97574189 to 97576006 1817 CpG island CpG island 3714
Tssr104636 11 97574320 to 97574333 13 + TSS region transcription start site region 104636
Tssr110446 11 97575156 to 97575208 52 - TSS region transcription start site region 110446
Tssr110447 11 97575210 to 97575236 26 - TSS region transcription start site region 110447
Tssr110448 11 97575239 to 97575256 17 - TSS region transcription start site region 110448
Tssr110449 11 97575272 to 97575275 3 - TSS region transcription start site region 110449
Tssr110450 11 97576334 to 97576355 21 - TSS region transcription start site region 110450
Tssr110451 11 97576441 to 97576449 8 - TSS region transcription start site region 110451
Sstapa3 11 110713165 to 97006867 -13706298 QTL suseptibility to Staphylococcus aureus infection 3