Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:96961171-97326490

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119 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nidd6k 11 19174204 to 97007000 77832796 QTL Nidd6 on KK-A
Alo1 11 81775249 to 97007000 15231751 heritable phenotypic marker alopecia 1
D030028A08Rik 11 96944146 to 96965060 20914 + lncRNA gene RIKEN cDNA D030028A08 gene
Sp2 11 96953332 to 96982129 28797 - protein coding gene Sp2 transcription factor
Tssr104589 11 96967019 to 96967033 14 + TSS region transcription start site region 104589
Tssr110375 11 96968655 to 96968673 18 - TSS region transcription start site region 110375
Tssr110376 11 96968705 to 96968718 13 - TSS region transcription start site region 110376
Cpgi3677 11 96977064 to 96978372 1308 CpG island CpG island 3677
Tssr110377 11 96977290 to 96977328 38 - TSS region transcription start site region 110377
Tssr110378 11 96977345 to 96977384 39 - TSS region transcription start site region 110378
Tssr110379 11 96977660 to 96977693 33 - TSS region transcription start site region 110379
Gm30809 11 96977701 to 96984111 6410 + lncRNA gene predicted gene, 30809
Cpgi3678 11 96988016 to 96988261 245 CpG island CpG island 3678
Tssr104590 11 96988072 to 96988082 10 + TSS region transcription start site region 104590
Tssr110380 11 96988486 to 96988488 2 - TSS region transcription start site region 110380
Cpgi3679 11 96997223 to 96997700 477 CpG island CpG island 3679
Estq3 11 97006867 to 99436202 2429335 QTL estradiol regulated response QTL 3
D11Mit67 11 97006867 to 97007000 133 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 67
Sp6 11 97013569 to 97024739 11170 + protein coding gene trans-acting transcription factor 6
Cpgi3680 11 97018152 to 97019822 1670 CpG island CpG island 3680
Tssr104591 11 97018758 to 97018765 7 + TSS region transcription start site region 104591
Tssr104592 11 97018819 to 97018827 8 + TSS region transcription start site region 104592
Gm11532 11 97020508 to 97026248 5740 - lncRNA gene predicted gene 11532
Cpgi3681 11 97021347 to 97022726 1379 CpG island CpG island 3681
Tssr110381 11 97026136 to 97026147 11 - TSS region transcription start site region 110381
Tssr110382 11 97026155 to 97026179 24 - TSS region transcription start site region 110382
Cpgi3682 11 97029844 to 97030518 674 CpG island CpG island 3682
Tssr104593 11 97029925 to 97029997 72 + TSS region transcription start site region 104593
Scrn2 11 97029952 to 97033960 4008 + protein coding gene secernin 2
Tssr104594 11 97030130 to 97030173 43 + TSS region transcription start site region 104594
Lrrc46 11 97034602 to 97041369 6767 - protein coding gene leucine rich repeat containing 46
Gm11533 11 97037007 to 97037483 476 + pseudogene predicted gene 11533
Tssr104595 11 97041073 to 97041110 37 + TSS region transcription start site region 104595
Tssr110383 11 97041307 to 97041353 46 - TSS region transcription start site region 110383
Cpgi3683 11 97041355 to 97041882 527 CpG island CpG island 3683
Tssr110384 11 97041364 to 97041392 28 - TSS region transcription start site region 110384
Tssr110385 11 97041395 to 97041402 7 - TSS region transcription start site region 110385
Tssr110386 11 97041424 to 97041436 12 - TSS region transcription start site region 110386
Tssr104596 11 97041554 to 97041563 9 + TSS region transcription start site region 104596
Mrpl10 11 97041567 to 97049213 7646 + protein coding gene mitochondrial ribosomal protein L10
Tssr104597 11 97041569 to 97041602 33 + TSS region transcription start site region 104597
Tssr104598 11 97044524 to 97044528 4 + TSS region transcription start site region 104598
Tssr110387 11 97048367 to 97048385 18 - TSS region transcription start site region 110387
Tssr110388 11 97048395 to 97048415 20 - TSS region transcription start site region 110388
Gm11574 11 97048691 to 97051432 2741 - unclassified non-coding RNA gene predicted gene 11574
Tssr104599 11 97050594 to 97050630 36 + TSS region transcription start site region 104599
Osbpl7 11 97050628 to 97068904 18276 + protein coding gene oxysterol binding protein-like 7
Cpgi3684 11 97050651 to 97050951 300 CpG island CpG island 3684
Tssr104600 11 97050811 to 97050856 45 + TSS region transcription start site region 104600
Tssr104601 11 97050857 to 97050877 20 + TSS region transcription start site region 104601
Mir8103 11 97063768 to 97063874 106 + miRNA gene microRNA 8103
Tssr104602 11 97066838 to 97066858 20 + TSS region transcription start site region 104602
D11Mit222 11 97072666 to 97072770 104 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 222
Gm11573 11 97096933 to 97097326 393 + pseudogene predicted gene 11573
Tbx21 11 97098071 to 97115331 17260 - protein coding gene T-box 21
Cpgi3685 11 97114338 to 97116129 1791 CpG island CpG island 3685
Tssr110389 11 97114533 to 97114536 3 - TSS region transcription start site region 110389
Tssr110390 11 97115327 to 97115332 5 - TSS region transcription start site region 110390
Gm11572 11 97116796 to 97116915 119 - pseudogene predicted gene 11572
Tssr110391 11 97126950 to 97126995 45 - TSS region transcription start site region 110391
Cpgi3686 11 97127044 to 97127483 439 CpG island CpG island 3686
Tbkbp1 11 97136171 to 97151490 15319 - protein coding gene TBK1 binding protein 1
Cpgi3687 11 97138468 to 97139678 1210 CpG island CpG island 3687
Tssr110392 11 97142282 to 97142286 4 - TSS region transcription start site region 110392
Tssr110393 11 97142926 to 97142930 4 - TSS region transcription start site region 110393
Mir7235 11 97146364 to 97146419 55 - miRNA gene microRNA 7235
Cpgi3688 11 97149858 to 97152063 2205 CpG island CpG island 3688
Tssr110394 11 97150025 to 97150084 59 - TSS region transcription start site region 110394
Kpnb1 11 97159714 to 97187881 28167 - protein coding gene karyopherin (importin) beta 1
Gm11583 11 97160990 to 97161675 685 + antisense lncRNA gene predicted gene 11583
Tssr104603 11 97161526 to 97161539 13 + TSS region transcription start site region 104603
Tssr110395 11 97162006 to 97162010 4 - TSS region transcription start site region 110395
Tssr110396 11 97182657 to 97182661 4 - TSS region transcription start site region 110396
Cpgi3689 11 97186867 to 97188910 2043 CpG island CpG island 3689
Tssr110397 11 97187592 to 97187616 24 - TSS region transcription start site region 110397
Tssr110398 11 97187648 to 97187680 32 - TSS region transcription start site region 110398
Tssr104604 11 97187700 to 97187711 11 + TSS region transcription start site region 104604
Tssr110399 11 97187815 to 97187835 20 - TSS region transcription start site region 110399
Tssr110400 11 97187836 to 97187850 14 - TSS region transcription start site region 110400
Tssr110401 11 97187872 to 97187926 54 - TSS region transcription start site region 110401
Tssr110402 11 97187930 to 97187948 18 - TSS region transcription start site region 110402
Tssr110403 11 97188070 to 97188072 2 - TSS region transcription start site region 110403
Tssr104605 11 97188468 to 97188481 13 + TSS region transcription start site region 104605
Tssr104606 11 97188554 to 97188580 26 + TSS region transcription start site region 104606
Npepps 11 97205842 to 97280638 74796 - protein coding gene aminopeptidase puromycin sensitive
Tssr110404 11 97207001 to 97207017 16 - TSS region transcription start site region 110404
Tssr110405 11 97237877 to 97237881 4 - TSS region transcription start site region 110405
Tssr110406 11 97239712 to 97239717 5 - TSS region transcription start site region 110406
Cpgi3690 11 97279552 to 97281353 1801 CpG island CpG island 3690
Tssr110407 11 97279613 to 97279634 21 - TSS region transcription start site region 110407
Tssr104607 11 97279739 to 97279758 19 + TSS region transcription start site region 104607
Tssr110408 11 97280332 to 97280407 75 - TSS region transcription start site region 110408
Tssr110409 11 97280432 to 97280444 12 - TSS region transcription start site region 110409
Tssr110410 11 97280454 to 97280465 11 - TSS region transcription start site region 110410
Tssr110411 11 97280470 to 97280606 136 - TSS region transcription start site region 110411
Tssr110412 11 97280626 to 97280650 24 - TSS region transcription start site region 110412
Gm11592 11 97280694 to 97283310 2616 + antisense lncRNA gene predicted gene 11592
Tssr110413 11 97282307 to 97282316 9 - TSS region transcription start site region 110413
Tssr110414 11 97284714 to 97284750 36 - TSS region transcription start site region 110414
Tssr110415 11 97287748 to 97287752 4 - TSS region transcription start site region 110415
Gm31005 11 97301331 to 97311190 9859 - lncRNA gene predicted gene, 31005
Tssr110416 11 97301732 to 97301736 4 - TSS region transcription start site region 110416
Tssr110417 11 97309453 to 97309468 15 - TSS region transcription start site region 110417
Tssr104608 11 97309587 to 97309625 38 + TSS region transcription start site region 104608
Tssr104609 11 97309645 to 97309659 14 + TSS region transcription start site region 104609
Tssr104610 11 97309680 to 97309700 20 + TSS region transcription start site region 104610
Cpgi3691 11 97309900 to 97310407 507 CpG island CpG island 3691
Tssr110418 11 97310027 to 97310060 33 - TSS region transcription start site region 110418
Tssr104611 11 97310216 to 97310225 9 + TSS region transcription start site region 104611
Tssr104612 11 97310254 to 97310278 24 + TSS region transcription start site region 104612
Tssr110419 11 97310273 to 97310289 16 - TSS region transcription start site region 110419
Tssr110420 11 97310290 to 97310307 17 - TSS region transcription start site region 110420
Tssr110421 11 97310318 to 97310335 17 - TSS region transcription start site region 110421
Cpgi3692 11 97315491 to 97316023 532 CpG island CpG island 3692
Tssr110422 11 97315622 to 97315634 12 - TSS region transcription start site region 110422
Mrpl45 11 97315716 to 97329920 14204 + protein coding gene mitochondrial ribosomal protein L45
Tssr104613 11 97315839 to 97315870 31 + TSS region transcription start site region 104613
Gm11594 11 97322328 to 97322489 161 - pseudogene predicted gene 11594
Sstapa3 11 110713165 to 97006867 -13706298 QTL suseptibility to Staphylococcus aureus infection 3