Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:96856364-97436419

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196 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nidd6k 11 19174204 to 97007000 77832796 QTL Nidd6 on KK-A
Alo1 11 81775249 to 97007000 15231751 heritable phenotypic marker alopecia 1
Copz2 11 96849876 to 96861203 11327 + protein coding gene coatomer protein complex, subunit zeta 2
Cpgi3672 11 96861467 to 96862332 865 CpG island CpG island 3672
Gm11523 11 96862997 to 96873954 10957 - lncRNA gene predicted gene 11523
Cpgi3673 11 96863304 to 96863551 247 CpG island CpG island 3673
D11Mit98 11 96863667 to 96863793 126 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 98
D11Dcr19 11 96863673 to 96863792 119 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 19
Gm11524 11 96870195 to 96871001 806 + pseudogene predicted gene 11524
Cpgi3674 11 96875568 to 96876337 769 CpG island CpG island 3674
Tssr110358 11 96880439 to 96880450 11 - TSS region transcription start site region 110358
Gm38961 11 96892501 to 96902535 10034 - lncRNA gene predicted gene, 38961
D11Mit160 11 96895099 to 96895292 193 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 160
D11Dcr20 11 96895122 to 96895269 147 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 20
Cdk5rap3 11 96907426 to 96916496 9070 - protein coding gene CDK5 regulatory subunit associated protein 3
Cpgi3675 11 96915955 to 96916830 875 CpG island CpG island 3675
Tssr110359 11 96916378 to 96916406 28 - TSS region transcription start site region 110359
Tssr110360 11 96916407 to 96916426 19 - TSS region transcription start site region 110360
Tssr110361 11 96916448 to 96916531 83 - TSS region transcription start site region 110361
Gm11525 11 96918941 to 96922493 3552 - antisense lncRNA gene predicted gene 11525
Tssr104579 11 96926150 to 96926156 6 + TSS region transcription start site region 104579
Prr15l 11 96926175 to 96935648 9473 + protein coding gene proline rich 15-like
Tssr104580 11 96926180 to 96926188 8 + TSS region transcription start site region 104580
Tssr104581 11 96929260 to 96929324 64 + TSS region transcription start site region 104581
Tssr104582 11 96929325 to 96929349 24 + TSS region transcription start site region 104582
Tssr104583 11 96929367 to 96929383 16 + TSS region transcription start site region 104583
Tssr104584 11 96929409 to 96929421 12 + TSS region transcription start site region 104584
Tssr104585 11 96931508 to 96931516 8 + TSS region transcription start site region 104585
Tssr3660 11 96934964 to 96934969 5 - TSS region transcription start site region 3660
Tssr110362 11 96936367 to 96936395 28 - TSS region transcription start site region 110362
Pnpo 11 96937825 to 96943986 6161 - protein coding gene pyridoxine 5'-phosphate oxidase
Cpgi3676 11 96943536 to 96944397 861 CpG island CpG island 3676
Tssr110363 11 96943773 to 96943784 11 - TSS region transcription start site region 110363
Tssr110364 11 96943786 to 96943797 11 - TSS region transcription start site region 110364
Tssr110365 11 96943800 to 96943850 50 - TSS region transcription start site region 110365
Tssr110366 11 96943931 to 96943940 9 - TSS region transcription start site region 110366
Tssr110367 11 96943945 to 96944023 78 - TSS region transcription start site region 110367
Tssr104586 11 96944142 to 96944222 80 + TSS region transcription start site region 104586
D030028A08Rik 11 96944146 to 96965060 20914 + lncRNA gene RIKEN cDNA D030028A08 gene
Tssr104587 11 96944234 to 96944285 51 + TSS region transcription start site region 104587
Tssr104588 11 96944286 to 96944299 13 + TSS region transcription start site region 104588
Tssr110368 11 96944933 to 96944946 13 - TSS region transcription start site region 110368
Sp2 11 96953332 to 96982129 28797 - protein coding gene Sp2 transcription factor
Tssr110369 11 96953688 to 96953711 23 - TSS region transcription start site region 110369
Tssr110370 11 96953732 to 96953744 12 - TSS region transcription start site region 110370
Tssr110371 11 96955919 to 96955957 38 - TSS region transcription start site region 110371
Tssr110372 11 96955964 to 96955975 11 - TSS region transcription start site region 110372
Tssr110373 11 96956193 to 96956221 28 - TSS region transcription start site region 110373
Tssr110374 11 96956223 to 96956236 13 - TSS region transcription start site region 110374
D11Jpk3 11 96958225 to 96958528 303 DNA segment DNA segment, Chr 11, Japan, Kominami 3
Tssr104589 11 96967019 to 96967033 14 + TSS region transcription start site region 104589
Tssr110375 11 96968655 to 96968673 18 - TSS region transcription start site region 110375
Tssr110376 11 96968705 to 96968718 13 - TSS region transcription start site region 110376
Cpgi3677 11 96977064 to 96978372 1308 CpG island CpG island 3677
Tssr110377 11 96977290 to 96977328 38 - TSS region transcription start site region 110377
Tssr110378 11 96977345 to 96977384 39 - TSS region transcription start site region 110378
Tssr110379 11 96977660 to 96977693 33 - TSS region transcription start site region 110379
Gm30809 11 96977701 to 96984111 6410 + lncRNA gene predicted gene, 30809
Cpgi3678 11 96988016 to 96988261 245 CpG island CpG island 3678
Tssr104590 11 96988072 to 96988082 10 + TSS region transcription start site region 104590
Tssr110380 11 96988486 to 96988488 2 - TSS region transcription start site region 110380
Cpgi3679 11 96997223 to 96997700 477 CpG island CpG island 3679
Estq3 11 97006867 to 99436202 2429335 QTL estradiol regulated response QTL 3
D11Mit67 11 97006867 to 97007000 133 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 67
Sp6 11 97013569 to 97024739 11170 + protein coding gene trans-acting transcription factor 6
Cpgi3680 11 97018152 to 97019822 1670 CpG island CpG island 3680
Tssr104591 11 97018758 to 97018765 7 + TSS region transcription start site region 104591
Tssr104592 11 97018819 to 97018827 8 + TSS region transcription start site region 104592
Gm11532 11 97020508 to 97026248 5740 - lncRNA gene predicted gene 11532
Cpgi3681 11 97021347 to 97022726 1379 CpG island CpG island 3681
Tssr110381 11 97026136 to 97026147 11 - TSS region transcription start site region 110381
Tssr110382 11 97026155 to 97026179 24 - TSS region transcription start site region 110382
Cpgi3682 11 97029844 to 97030518 674 CpG island CpG island 3682
Tssr104593 11 97029925 to 97029997 72 + TSS region transcription start site region 104593
Scrn2 11 97029952 to 97033960 4008 + protein coding gene secernin 2
Tssr104594 11 97030130 to 97030173 43 + TSS region transcription start site region 104594
Lrrc46 11 97034602 to 97041369 6767 - protein coding gene leucine rich repeat containing 46
Gm11533 11 97037007 to 97037483 476 + pseudogene predicted gene 11533
Tssr104595 11 97041073 to 97041110 37 + TSS region transcription start site region 104595
Tssr110383 11 97041307 to 97041353 46 - TSS region transcription start site region 110383
Cpgi3683 11 97041355 to 97041882 527 CpG island CpG island 3683
Tssr110384 11 97041364 to 97041392 28 - TSS region transcription start site region 110384
Tssr110385 11 97041395 to 97041402 7 - TSS region transcription start site region 110385
Tssr110386 11 97041424 to 97041436 12 - TSS region transcription start site region 110386
Tssr104596 11 97041554 to 97041563 9 + TSS region transcription start site region 104596
Mrpl10 11 97041567 to 97049213 7646 + protein coding gene mitochondrial ribosomal protein L10
Tssr104597 11 97041569 to 97041602 33 + TSS region transcription start site region 104597
Tssr104598 11 97044524 to 97044528 4 + TSS region transcription start site region 104598
Tssr110387 11 97048367 to 97048385 18 - TSS region transcription start site region 110387
Tssr110388 11 97048395 to 97048415 20 - TSS region transcription start site region 110388
Gm11574 11 97048691 to 97051432 2741 - unclassified non-coding RNA gene predicted gene 11574
Tssr104599 11 97050594 to 97050630 36 + TSS region transcription start site region 104599
Osbpl7 11 97050628 to 97068904 18276 + protein coding gene oxysterol binding protein-like 7
Cpgi3684 11 97050651 to 97050951 300 CpG island CpG island 3684
Tssr104600 11 97050811 to 97050856 45 + TSS region transcription start site region 104600
Tssr104601 11 97050857 to 97050877 20 + TSS region transcription start site region 104601
Mir8103 11 97063768 to 97063874 106 + miRNA gene microRNA 8103
Tssr104602 11 97066838 to 97066858 20 + TSS region transcription start site region 104602
D11Mit222 11 97072666 to 97072770 104 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 222
Gm11573 11 97096933 to 97097326 393 + pseudogene predicted gene 11573
Tbx21 11 97098071 to 97115331 17260 - protein coding gene T-box 21
Cpgi3685 11 97114338 to 97116129 1791 CpG island CpG island 3685
Tssr110389 11 97114533 to 97114536 3 - TSS region transcription start site region 110389
Tssr110390 11 97115327 to 97115332 5 - TSS region transcription start site region 110390
Gm11572 11 97116796 to 97116915 119 - pseudogene predicted gene 11572
Tssr110391 11 97126950 to 97126995 45 - TSS region transcription start site region 110391
Cpgi3686 11 97127044 to 97127483 439 CpG island CpG island 3686
Tbkbp1 11 97136171 to 97151490 15319 - protein coding gene TBK1 binding protein 1
Cpgi3687 11 97138468 to 97139678 1210 CpG island CpG island 3687
Tssr110392 11 97142282 to 97142286 4 - TSS region transcription start site region 110392
Tssr110393 11 97142926 to 97142930 4 - TSS region transcription start site region 110393
Mir7235 11 97146364 to 97146419 55 - miRNA gene microRNA 7235
Cpgi3688 11 97149858 to 97152063 2205 CpG island CpG island 3688
Tssr110394 11 97150025 to 97150084 59 - TSS region transcription start site region 110394
Kpnb1 11 97159714 to 97187881 28167 - protein coding gene karyopherin (importin) beta 1
Gm11583 11 97160990 to 97161675 685 + antisense lncRNA gene predicted gene 11583
Tssr104603 11 97161526 to 97161539 13 + TSS region transcription start site region 104603
Tssr110395 11 97162006 to 97162010 4 - TSS region transcription start site region 110395
Tssr110396 11 97182657 to 97182661 4 - TSS region transcription start site region 110396
Cpgi3689 11 97186867 to 97188910 2043 CpG island CpG island 3689
Tssr110397 11 97187592 to 97187616 24 - TSS region transcription start site region 110397
Tssr110398 11 97187648 to 97187680 32 - TSS region transcription start site region 110398
Tssr104604 11 97187700 to 97187711 11 + TSS region transcription start site region 104604
Tssr110399 11 97187815 to 97187835 20 - TSS region transcription start site region 110399
Tssr110400 11 97187836 to 97187850 14 - TSS region transcription start site region 110400
Tssr110401 11 97187872 to 97187926 54 - TSS region transcription start site region 110401
Tssr110402 11 97187930 to 97187948 18 - TSS region transcription start site region 110402
Tssr110403 11 97188070 to 97188072 2 - TSS region transcription start site region 110403
Tssr104605 11 97188468 to 97188481 13 + TSS region transcription start site region 104605
Tssr104606 11 97188554 to 97188580 26 + TSS region transcription start site region 104606
Npepps 11 97205842 to 97280638 74796 - protein coding gene aminopeptidase puromycin sensitive
Tssr110404 11 97207001 to 97207017 16 - TSS region transcription start site region 110404
Tssr110405 11 97237877 to 97237881 4 - TSS region transcription start site region 110405
Tssr110406 11 97239712 to 97239717 5 - TSS region transcription start site region 110406
Cpgi3690 11 97279552 to 97281353 1801 CpG island CpG island 3690
Tssr110407 11 97279613 to 97279634 21 - TSS region transcription start site region 110407
Tssr104607 11 97279739 to 97279758 19 + TSS region transcription start site region 104607
Tssr110408 11 97280332 to 97280407 75 - TSS region transcription start site region 110408
Tssr110409 11 97280432 to 97280444 12 - TSS region transcription start site region 110409
Tssr110410 11 97280454 to 97280465 11 - TSS region transcription start site region 110410
Tssr110411 11 97280470 to 97280606 136 - TSS region transcription start site region 110411
Tssr110412 11 97280626 to 97280650 24 - TSS region transcription start site region 110412
Gm11592 11 97280694 to 97283310 2616 + antisense lncRNA gene predicted gene 11592
Tssr110413 11 97282307 to 97282316 9 - TSS region transcription start site region 110413
Tssr110414 11 97284714 to 97284750 36 - TSS region transcription start site region 110414
Tssr110415 11 97287748 to 97287752 4 - TSS region transcription start site region 110415
Gm31005 11 97301331 to 97311190 9859 - lncRNA gene predicted gene, 31005
Tssr110416 11 97301732 to 97301736 4 - TSS region transcription start site region 110416
Tssr110417 11 97309453 to 97309468 15 - TSS region transcription start site region 110417
Tssr104608 11 97309587 to 97309625 38 + TSS region transcription start site region 104608
Tssr104609 11 97309645 to 97309659 14 + TSS region transcription start site region 104609
Tssr104610 11 97309680 to 97309700 20 + TSS region transcription start site region 104610
Cpgi3691 11 97309900 to 97310407 507 CpG island CpG island 3691
Tssr110418 11 97310027 to 97310060 33 - TSS region transcription start site region 110418
Tssr104611 11 97310216 to 97310225 9 + TSS region transcription start site region 104611
Tssr104612 11 97310254 to 97310278 24 + TSS region transcription start site region 104612
Tssr110419 11 97310273 to 97310289 16 - TSS region transcription start site region 110419
Tssr110420 11 97310290 to 97310307 17 - TSS region transcription start site region 110420
Tssr110421 11 97310318 to 97310335 17 - TSS region transcription start site region 110421
Cpgi3692 11 97315491 to 97316023 532 CpG island CpG island 3692
Tssr110422 11 97315622 to 97315634 12 - TSS region transcription start site region 110422
Mrpl45 11 97315716 to 97329920 14204 + protein coding gene mitochondrial ribosomal protein L45
Tssr104613 11 97315839 to 97315870 31 + TSS region transcription start site region 104613
Gm11594 11 97322328 to 97322489 161 - pseudogene predicted gene 11594
Tssr104614 11 97329540 to 97329545 5 + TSS region transcription start site region 104614
Gpr179 11 97332109 to 97352077 19968 - protein coding gene G protein-coupled receptor 179
Cpgi3693 11 97338753 to 97339234 481 CpG island CpG island 3693
Cpgi3694 11 97343881 to 97344248 367 CpG island CpG island 3694
Tssr110423 11 97352348 to 97352363 15 - TSS region transcription start site region 110423
Cpgi3695 11 97361893 to 97363582 1689 CpG island CpG island 3695
Tssr104615 11 97362205 to 97362254 49 + TSS region transcription start site region 104615
Tssr104616 11 97362275 to 97362313 38 + TSS region transcription start site region 104616
Tssr104617 11 97362320 to 97362332 12 + TSS region transcription start site region 104617
Tssr104618 11 97362372 to 97362385 13 + TSS region transcription start site region 104618
Tssr104619 11 97362396 to 97362464 68 + TSS region transcription start site region 104619
Socs7 11 97362551 to 97398542 35991 + protein coding gene suppressor of cytokine signaling 7
Tssr104620 11 97373059 to 97373069 10 + TSS region transcription start site region 104620
Tssr104621 11 97376478 to 97376483 5 + TSS region transcription start site region 104621
Cpgi3696 11 97400261 to 97400727 466 CpG island CpG island 3696
Cpgi3697 11 97403910 to 97405151 1241 CpG island CpG island 3697
Tssr104622 11 97404388 to 97404440 52 + TSS region transcription start site region 104622
Cpgi3698 11 97415499 to 97416282 783 CpG island CpG island 3698
Tssr104623 11 97415527 to 97415538 11 + TSS region transcription start site region 104623
Arhgap23 11 97415533 to 97502402 86869 + protein coding gene Rho GTPase activating protein 23
Tssr104624 11 97415554 to 97415576 22 + TSS region transcription start site region 104624
Tssr104625 11 97415577 to 97415597 20 + TSS region transcription start site region 104625
Cpgi3699 11 97428098 to 97428587 489 CpG island CpG island 3699
Cpgi3700 11 97434923 to 97435091 168 CpG island CpG island 3700
Tssr110424 11 97435172 to 97435181 9 - TSS region transcription start site region 110424
Tssr104626 11 97435311 to 97435334 23 + TSS region transcription start site region 104626
Tssr104627 11 97435336 to 97435347 11 + TSS region transcription start site region 104627
Tssr104628 11 97435369 to 97435379 10 + TSS region transcription start site region 104628
Tssr3661 11 97435389 to 97435395 6 + TSS region transcription start site region 3661
Tssr110425 11 97435918 to 97435951 33 - TSS region transcription start site region 110425
Tssr104629 11 97436275 to 97436320 45 + TSS region transcription start site region 104629
Sstapa3 11 110713165 to 97006867 -13706298 QTL suseptibility to Staphylococcus aureus infection 3