Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:96577654-96917660

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Skap1 11 96464593 to 96759130 294537 + protein coding gene src family associated phosphoprotein 1
Tssr104558 11 96603776 to 96603778 2 + TSS region transcription start site region 104558
5830435N17Rik 11 96610739 to 96611330 591 unclassified gene RIKEN cDNA 5830435N17 gene
Tssr104559 11 96618503 to 96618506 3 + TSS region transcription start site region 104559
Gm38448 11 96626946 to 96678375 51429 + lncRNA gene predicted gene, 38448
Tssr104560 11 96633767 to 96633795 28 + TSS region transcription start site region 104560
Tssr104561 11 96639183 to 96639185 2 + TSS region transcription start site region 104561
Tssr104562 11 96658634 to 96658679 45 + TSS region transcription start site region 104562
Tssr104563 11 96658762 to 96658773 11 + TSS region transcription start site region 104563
Tssr104564 11 96693603 to 96693614 11 + TSS region transcription start site region 104564
2010300F17Rik 11 96712982 to 96747436 34454 - lincRNA gene RIKEN cDNA 2010300F17 gene
Tssr110334 11 96713349 to 96713405 56 - TSS region transcription start site region 110334
Tssr110335 11 96713410 to 96713423 13 - TSS region transcription start site region 110335
Cpgi3666 11 96724229 to 96724405 176 CpG island CpG island 3666
Tssr104565 11 96739926 to 96739927 1 + TSS region transcription start site region 104565
Tssr104566 11 96742955 to 96742959 4 + TSS region transcription start site region 104566
Tssr104567 11 96747074 to 96747106 32 + TSS region transcription start site region 104567
Tssr110336 11 96747405 to 96747416 11 - TSS region transcription start site region 110336
Tssr110337 11 96747419 to 96747432 13 - TSS region transcription start site region 110337
Tssr110338 11 96747654 to 96747660 6 - TSS region transcription start site region 110338
Gm11537 11 96766802 to 96768269 1467 + antisense lncRNA gene predicted gene 11537
Snx11 11 96767555 to 96777559 10004 - protein coding gene sorting nexin 11
Tssr110339 11 96773345 to 96773352 7 - TSS region transcription start site region 110339
Tssr110340 11 96773359 to 96773366 7 - TSS region transcription start site region 110340
Tssr110341 11 96773377 to 96773388 11 - TSS region transcription start site region 110341
Tssr3659 11 96773402 to 96773413 11 - TSS region transcription start site region 3659
Cpgi3667 11 96777220 to 96777910 690 CpG island CpG island 3667
Tssr110342 11 96777478 to 96777479 1 - TSS region transcription start site region 110342
Tssr110343 11 96777497 to 96777546 49 - TSS region transcription start site region 110343
Tssr104568 11 96777841 to 96777864 23 + TSS region transcription start site region 104568
Tssr110344 11 96780318 to 96780325 7 - TSS region transcription start site region 110344
Tssr110345 11 96780341 to 96780355 14 - TSS region transcription start site region 110345
Cpgi3668 11 96788840 to 96789811 971 CpG island CpG island 3668
Tssr110346 11 96788988 to 96789008 20 - TSS region transcription start site region 110346
Tssr104569 11 96789118 to 96789146 28 + TSS region transcription start site region 104569
Cbx1 11 96789127 to 96808640 19513 + protein coding gene chromobox 1
Tssr104570 11 96789149 to 96789206 57 + TSS region transcription start site region 104570
Tssr104571 11 96789213 to 96789224 11 + TSS region transcription start site region 104571
Tssr104572 11 96789235 to 96789254 19 + TSS region transcription start site region 104572
Gm11517 11 96795439 to 96795825 386 - pseudogene predicted gene 11517
Tssr110347 11 96798600 to 96798636 36 - TSS region transcription start site region 110347
Tssr110348 11 96800806 to 96800868 62 - TSS region transcription start site region 110348
Tssr104573 11 96807685 to 96807719 34 + TSS region transcription start site region 104573
Tssr104574 11 96807792 to 96807802 10 + TSS region transcription start site region 104574
4633401L03Rik 11 96814005 to 96815608 1603 unclassified gene RIKEN cDNA 4633401L03 gene
Nfe2l1 11 96817414 to 96829968 12554 - protein coding gene nuclear factor, erythroid derived 2,-like 1
Tssr110349 11 96822729 to 96822755 26 - TSS region transcription start site region 110349
Cpgi3669 11 96823740 to 96824364 624 CpG island CpG island 3669
Tssr110350 11 96823987 to 96824024 37 - TSS region transcription start site region 110350
Tssr110351 11 96824130 to 96824159 29 - TSS region transcription start site region 110351
Tssr110352 11 96824173 to 96824198 25 - TSS region transcription start site region 110352
Tssr110353 11 96828176 to 96828191 15 - TSS region transcription start site region 110353
Cpgi3670 11 96829212 to 96830626 1414 CpG island CpG island 3670
Tssr110354 11 96829465 to 96829476 11 - TSS region transcription start site region 110354
Tssr110355 11 96829483 to 96829499 16 - TSS region transcription start site region 110355
Tssr104575 11 96829597 to 96829643 46 + TSS region transcription start site region 104575
Tssr110356 11 96829904 to 96829951 47 - TSS region transcription start site region 110356
Tssr110357 11 96829959 to 96829972 13 - TSS region transcription start site region 110357
Tssr104576 11 96830190 to 96830216 26 + TSS region transcription start site region 104576
Cpgi3671 11 96849567 to 96850578 1011 CpG island CpG island 3671
Tssr104577 11 96849863 to 96849897 34 + TSS region transcription start site region 104577
Copz2 11 96849876 to 96861203 11327 + protein coding gene coatomer protein complex, subunit zeta 2
Mir152 11 96850393 to 96850465 72 + miRNA gene microRNA 152
Tssr104578 11 96855254 to 96855272 18 + TSS region transcription start site region 104578
Cpgi3672 11 96861467 to 96862332 865 CpG island CpG island 3672
Gm11523 11 96862997 to 96873954 10957 - lncRNA gene predicted gene 11523
Cpgi3673 11 96863304 to 96863551 247 CpG island CpG island 3673
D11Mit98 11 96863667 to 96863793 126 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 98
D11Dcr19 11 96863673 to 96863792 119 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 19
Gm11524 11 96870195 to 96871001 806 + pseudogene predicted gene 11524
Cpgi3674 11 96875568 to 96876337 769 CpG island CpG island 3674
Tssr110358 11 96880439 to 96880450 11 - TSS region transcription start site region 110358
Gm38961 11 96892501 to 96902535 10034 - lncRNA gene predicted gene, 38961
D11Mit160 11 96895099 to 96895292 193 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 160
D11Dcr20 11 96895122 to 96895269 147 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 20
Cdk5rap3 11 96907426 to 96916496 9070 - protein coding gene CDK5 regulatory subunit associated protein 3
Cpgi3675 11 96915955 to 96916830 875 CpG island CpG island 3675
Tssr110359 11 96916378 to 96916406 28 - TSS region transcription start site region 110359
Tssr110360 11 96916407 to 96916426 19 - TSS region transcription start site region 110360
Tssr110361 11 96916448 to 96916531 83 - TSS region transcription start site region 110361