Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:96444593-96779130

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi3662 11 96447970 to 96448367 397 CpG island CpG island 3662
Gm11529 11 96448323 to 96464547 16224 - lncRNA gene predicted gene 11529
Tssr104536 11 96464043 to 96464048 5 + TSS region transcription start site region 104536
Cpgi3663 11 96464319 to 96464969 650 CpG island CpG island 3663
Tssr104537 11 96464587 to 96464637 50 + TSS region transcription start site region 104537
Skap1 11 96464593 to 96759130 294537 + protein coding gene src family associated phosphoprotein 1
Tssr104538 11 96464649 to 96464660 11 + TSS region transcription start site region 104538
Tssr110333 11 96467118 to 96467123 5 - TSS region transcription start site region 110333
Tssr104539 11 96467257 to 96467276 19 + TSS region transcription start site region 104539
Tssr104540 11 96487542 to 96487545 3 + TSS region transcription start site region 104540
Gm38960 11 96492963 to 96540109 47146 - lncRNA gene predicted gene, 38960
Cpgi3664 11 96526928 to 96527262 334 CpG island CpG island 3664
Tssr104541 11 96532881 to 96532883 2 + TSS region transcription start site region 104541
Tssr104542 11 96542431 to 96542434 3 + TSS region transcription start site region 104542
Tssr104543 11 96544719 to 96544723 4 + TSS region transcription start site region 104543
Tssr104544 11 96545373 to 96545395 22 + TSS region transcription start site region 104544
Tssr104545 11 96545426 to 96545433 7 + TSS region transcription start site region 104545
Tssr104546 11 96545434 to 96545449 15 + TSS region transcription start site region 104546
Tssr104547 11 96545476 to 96545481 5 + TSS region transcription start site region 104547
Tssr104548 11 96545570 to 96545581 11 + TSS region transcription start site region 104548
Tssr104549 11 96545583 to 96545598 15 + TSS region transcription start site region 104549
Tssr104550 11 96545641 to 96545649 8 + TSS region transcription start site region 104550
Tssr104551 11 96545669 to 96545689 20 + TSS region transcription start site region 104551
Tssr104552 11 96545690 to 96545697 7 + TSS region transcription start site region 104552
Tssr104553 11 96547027 to 96547031 4 + TSS region transcription start site region 104553
Tssr104554 11 96567486 to 96567490 4 + TSS region transcription start site region 104554
Cpgi3665 11 96570336 to 96570871 535 CpG island CpG island 3665
Tssr104555 11 96572481 to 96572486 5 + TSS region transcription start site region 104555
Tssr104556 11 96574871 to 96574872 1 + TSS region transcription start site region 104556
Tssr104557 11 96574896 to 96574898 2 + TSS region transcription start site region 104557
Tssr104558 11 96603776 to 96603778 2 + TSS region transcription start site region 104558
5830435N17Rik 11 96610739 to 96611330 591 unclassified gene RIKEN cDNA 5830435N17 gene
Tssr104559 11 96618503 to 96618506 3 + TSS region transcription start site region 104559
Gm38448 11 96626946 to 96678375 51429 + lncRNA gene predicted gene, 38448
Tssr104560 11 96633767 to 96633795 28 + TSS region transcription start site region 104560
Tssr104561 11 96639183 to 96639185 2 + TSS region transcription start site region 104561
Tssr104562 11 96658634 to 96658679 45 + TSS region transcription start site region 104562
Tssr104563 11 96658762 to 96658773 11 + TSS region transcription start site region 104563
Tssr104564 11 96693603 to 96693614 11 + TSS region transcription start site region 104564
2010300F17Rik 11 96712982 to 96747436 34454 - lincRNA gene RIKEN cDNA 2010300F17 gene
Tssr110334 11 96713349 to 96713405 56 - TSS region transcription start site region 110334
Tssr110335 11 96713410 to 96713423 13 - TSS region transcription start site region 110335
Cpgi3666 11 96724229 to 96724405 176 CpG island CpG island 3666
Tssr104565 11 96739926 to 96739927 1 + TSS region transcription start site region 104565
Tssr104566 11 96742955 to 96742959 4 + TSS region transcription start site region 104566
Tssr104567 11 96747074 to 96747106 32 + TSS region transcription start site region 104567
Tssr110336 11 96747405 to 96747416 11 - TSS region transcription start site region 110336
Tssr110337 11 96747419 to 96747432 13 - TSS region transcription start site region 110337
Tssr110338 11 96747654 to 96747660 6 - TSS region transcription start site region 110338
Gm11537 11 96766802 to 96768269 1467 + antisense lncRNA gene predicted gene 11537
Snx11 11 96767555 to 96777559 10004 - protein coding gene sorting nexin 11
Tssr110339 11 96773345 to 96773352 7 - TSS region transcription start site region 110339
Tssr110340 11 96773359 to 96773366 7 - TSS region transcription start site region 110340
Tssr110341 11 96773377 to 96773388 11 - TSS region transcription start site region 110341
Tssr3659 11 96773402 to 96773413 11 - TSS region transcription start site region 3659
Cpgi3667 11 96777220 to 96777910 690 CpG island CpG island 3667
Tssr110342 11 96777478 to 96777479 1 - TSS region transcription start site region 110342
Tssr110343 11 96777497 to 96777546 49 - TSS region transcription start site region 110343
Tssr104568 11 96777841 to 96777864 23 + TSS region transcription start site region 104568