Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:96341867-97672000

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418 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nidd6k 11 19174204 to 97007000 77832796 QTL Nidd6 on KK-A
Alo1 11 81775249 to 97007000 15231751 heritable phenotypic marker alopecia 1
Del(11Chad-Hoxb1)19Brd 11 94565074 to 96368256 1803182 complex/cluster/region deletion, Chr 11, Bradley 19
Del(11Hoxb3-Hoxb4)1Karl 11 96318267 to 96347930 29663 cytogenetic marker deletion, Chr 11, Stefan Karlsson 1
Hoxb3 11 96323326 to 96347930 24604 + protein coding gene homeobox B3
Gm11536 11 96336299 to 96342108 5809 - antisense lncRNA gene predicted gene 11536
Cpgi3653 11 96341871 to 96342331 460 CpG island CpG island 3653
Hoxb3os 11 96343033 to 96353149 10116 - antisense lncRNA gene homeobox B3 and homeobox B2, opposite strand
Cpgi3654 11 96344051 to 96344615 564 CpG island CpG island 3654
Cpgi3655 11 96345367 to 96346376 1009 CpG island CpG island 3655
Tssr110329 11 96347295 to 96347330 35 - TSS region transcription start site region 110329
Tssr110330 11 96347346 to 96347359 13 - TSS region transcription start site region 110330
Tssr110331 11 96350073 to 96350127 54 - TSS region transcription start site region 110331
Tssr110332 11 96350188 to 96350199 11 - TSS region transcription start site region 110332
Tssr104519 11 96351596 to 96351635 39 + TSS region transcription start site region 104519
Hoxb2 11 96351632 to 96354020 2388 + protein coding gene homeobox B2
Tssr104520 11 96351869 to 96351874 5 + TSS region transcription start site region 104520
Tssr104521 11 96351898 to 96351908 10 + TSS region transcription start site region 104521
Tssr104522 11 96351950 to 96351968 18 + TSS region transcription start site region 104522
Tssr104523 11 96351974 to 96352018 44 + TSS region transcription start site region 104523
Cpgi3656 11 96352012 to 96352176 164 CpG island CpG island 3656
Tssr104524 11 96352054 to 96352070 16 + TSS region transcription start site region 104524
Tssr104525 11 96352120 to 96352138 18 + TSS region transcription start site region 104525
Cpgi3657 11 96352668 to 96353714 1046 CpG island CpG island 3657
Tssr104526 11 96352864 to 96352881 17 + TSS region transcription start site region 104526
Tssr104527 11 96352886 to 96352900 14 + TSS region transcription start site region 104527
Tssr104528 11 96353075 to 96353086 11 + TSS region transcription start site region 104528
Tssr104529 11 96353127 to 96353140 13 + TSS region transcription start site region 104529
Tssr104530 11 96353155 to 96353164 9 + TSS region transcription start site region 104530
Tssr104531 11 96353324 to 96353342 18 + TSS region transcription start site region 104531
Cpgi3658 11 96354464 to 96354782 318 CpG island CpG island 3658
Tssr104532 11 96365714 to 96365736 22 + TSS region transcription start site region 104532
Tssr104533 11 96365740 to 96365751 11 + TSS region transcription start site region 104533
Hoxb1 11 96365752 to 96368256 2504 + protein coding gene homeobox B1
Tssr104534 11 96365754 to 96365761 7 + TSS region transcription start site region 104534
Cpgi3659 11 96365833 to 96366379 546 CpG island CpG island 3659
Tssr104535 11 96365862 to 96365899 37 + TSS region transcription start site region 104535
Cpgi3660 11 96366667 to 96367098 431 CpG island CpG island 3660
Gm11531 11 96392112 to 96392666 554 + pseudogene predicted gene 11531
Cpgi3661 11 96407646 to 96408023 377 CpG island CpG island 3661
Cpgi3662 11 96447970 to 96448367 397 CpG island CpG island 3662
Gm11529 11 96448323 to 96464547 16224 - lncRNA gene predicted gene 11529
Tssr104536 11 96464043 to 96464048 5 + TSS region transcription start site region 104536
Cpgi3663 11 96464319 to 96464969 650 CpG island CpG island 3663
Tssr104537 11 96464587 to 96464637 50 + TSS region transcription start site region 104537
Skap1 11 96464593 to 96759130 294537 + protein coding gene src family associated phosphoprotein 1
Tssr104538 11 96464649 to 96464660 11 + TSS region transcription start site region 104538
Tssr110333 11 96467118 to 96467123 5 - TSS region transcription start site region 110333
Tssr104539 11 96467257 to 96467276 19 + TSS region transcription start site region 104539
Tssr104540 11 96487542 to 96487545 3 + TSS region transcription start site region 104540
Gm38960 11 96492963 to 96540109 47146 - lncRNA gene predicted gene, 38960
Cpgi3664 11 96526928 to 96527262 334 CpG island CpG island 3664
Tssr104541 11 96532881 to 96532883 2 + TSS region transcription start site region 104541
Tssr104542 11 96542431 to 96542434 3 + TSS region transcription start site region 104542
Tssr104543 11 96544719 to 96544723 4 + TSS region transcription start site region 104543
Tssr104544 11 96545373 to 96545395 22 + TSS region transcription start site region 104544
Tssr104545 11 96545426 to 96545433 7 + TSS region transcription start site region 104545
Tssr104546 11 96545434 to 96545449 15 + TSS region transcription start site region 104546
Tssr104547 11 96545476 to 96545481 5 + TSS region transcription start site region 104547
Tssr104548 11 96545570 to 96545581 11 + TSS region transcription start site region 104548
Tssr104549 11 96545583 to 96545598 15 + TSS region transcription start site region 104549
Tssr104550 11 96545641 to 96545649 8 + TSS region transcription start site region 104550
Tssr104551 11 96545669 to 96545689 20 + TSS region transcription start site region 104551
Tssr104552 11 96545690 to 96545697 7 + TSS region transcription start site region 104552
Tssr104553 11 96547027 to 96547031 4 + TSS region transcription start site region 104553
Tssr104554 11 96567486 to 96567490 4 + TSS region transcription start site region 104554
Cpgi3665 11 96570336 to 96570871 535 CpG island CpG island 3665
Tssr104555 11 96572481 to 96572486 5 + TSS region transcription start site region 104555
Tssr104556 11 96574871 to 96574872 1 + TSS region transcription start site region 104556
Tssr104557 11 96574896 to 96574898 2 + TSS region transcription start site region 104557
Tssr104558 11 96603776 to 96603778 2 + TSS region transcription start site region 104558
5830435N17Rik 11 96610739 to 96611330 591 unclassified gene RIKEN cDNA 5830435N17 gene
Tssr104559 11 96618503 to 96618506 3 + TSS region transcription start site region 104559
Gm38448 11 96626946 to 96678375 51429 + lncRNA gene predicted gene, 38448
Tssr104560 11 96633767 to 96633795 28 + TSS region transcription start site region 104560
Tssr104561 11 96639183 to 96639185 2 + TSS region transcription start site region 104561
Tssr104562 11 96658634 to 96658679 45 + TSS region transcription start site region 104562
Tssr104563 11 96658762 to 96658773 11 + TSS region transcription start site region 104563
Tssr104564 11 96693603 to 96693614 11 + TSS region transcription start site region 104564
2010300F17Rik 11 96712982 to 96747436 34454 - lincRNA gene RIKEN cDNA 2010300F17 gene
Tssr110334 11 96713349 to 96713405 56 - TSS region transcription start site region 110334
Tssr110335 11 96713410 to 96713423 13 - TSS region transcription start site region 110335
Cpgi3666 11 96724229 to 96724405 176 CpG island CpG island 3666
Tssr104565 11 96739926 to 96739927 1 + TSS region transcription start site region 104565
Tssr104566 11 96742955 to 96742959 4 + TSS region transcription start site region 104566
Tssr104567 11 96747074 to 96747106 32 + TSS region transcription start site region 104567
Tssr110336 11 96747405 to 96747416 11 - TSS region transcription start site region 110336
Tssr110337 11 96747419 to 96747432 13 - TSS region transcription start site region 110337
Tssr110338 11 96747654 to 96747660 6 - TSS region transcription start site region 110338
Gm11537 11 96766802 to 96768269 1467 + antisense lncRNA gene predicted gene 11537
Snx11 11 96767555 to 96777559 10004 - protein coding gene sorting nexin 11
Tssr110339 11 96773345 to 96773352 7 - TSS region transcription start site region 110339
Tssr110340 11 96773359 to 96773366 7 - TSS region transcription start site region 110340
Tssr110341 11 96773377 to 96773388 11 - TSS region transcription start site region 110341
Tssr3659 11 96773402 to 96773413 11 - TSS region transcription start site region 3659
Cpgi3667 11 96777220 to 96777910 690 CpG island CpG island 3667
Tssr110342 11 96777478 to 96777479 1 - TSS region transcription start site region 110342
Tssr110343 11 96777497 to 96777546 49 - TSS region transcription start site region 110343
Tssr104568 11 96777841 to 96777864 23 + TSS region transcription start site region 104568
Tssr110344 11 96780318 to 96780325 7 - TSS region transcription start site region 110344
Tssr110345 11 96780341 to 96780355 14 - TSS region transcription start site region 110345
Cpgi3668 11 96788840 to 96789811 971 CpG island CpG island 3668
Tssr110346 11 96788988 to 96789008 20 - TSS region transcription start site region 110346
Tssr104569 11 96789118 to 96789146 28 + TSS region transcription start site region 104569
Cbx1 11 96789127 to 96808640 19513 + protein coding gene chromobox 1
Tssr104570 11 96789149 to 96789206 57 + TSS region transcription start site region 104570
Tssr104571 11 96789213 to 96789224 11 + TSS region transcription start site region 104571
Tssr104572 11 96789235 to 96789254 19 + TSS region transcription start site region 104572
Gm11517 11 96795439 to 96795825 386 - pseudogene predicted gene 11517
Tssr110347 11 96798600 to 96798636 36 - TSS region transcription start site region 110347
Tssr110348 11 96800806 to 96800868 62 - TSS region transcription start site region 110348
Tssr104573 11 96807685 to 96807719 34 + TSS region transcription start site region 104573
Tssr104574 11 96807792 to 96807802 10 + TSS region transcription start site region 104574
4633401L03Rik 11 96814005 to 96815608 1603 unclassified gene RIKEN cDNA 4633401L03 gene
Nfe2l1 11 96817414 to 96829968 12554 - protein coding gene nuclear factor, erythroid derived 2,-like 1
Tssr110349 11 96822729 to 96822755 26 - TSS region transcription start site region 110349
Cpgi3669 11 96823740 to 96824364 624 CpG island CpG island 3669
Tssr110350 11 96823987 to 96824024 37 - TSS region transcription start site region 110350
Tssr110351 11 96824130 to 96824159 29 - TSS region transcription start site region 110351
Tssr110352 11 96824173 to 96824198 25 - TSS region transcription start site region 110352
Tssr110353 11 96828176 to 96828191 15 - TSS region transcription start site region 110353
Cpgi3670 11 96829212 to 96830626 1414 CpG island CpG island 3670
Tssr110354 11 96829465 to 96829476 11 - TSS region transcription start site region 110354
Tssr110355 11 96829483 to 96829499 16 - TSS region transcription start site region 110355
Tssr104575 11 96829597 to 96829643 46 + TSS region transcription start site region 104575
Tssr110356 11 96829904 to 96829951 47 - TSS region transcription start site region 110356
Tssr110357 11 96829959 to 96829972 13 - TSS region transcription start site region 110357
Tssr104576 11 96830190 to 96830216 26 + TSS region transcription start site region 104576
Cpgi3671 11 96849567 to 96850578 1011 CpG island CpG island 3671
Tssr104577 11 96849863 to 96849897 34 + TSS region transcription start site region 104577
Copz2 11 96849876 to 96861203 11327 + protein coding gene coatomer protein complex, subunit zeta 2
Mir152 11 96850393 to 96850465 72 + miRNA gene microRNA 152
Tssr104578 11 96855254 to 96855272 18 + TSS region transcription start site region 104578
Cpgi3672 11 96861467 to 96862332 865 CpG island CpG island 3672
Gm11523 11 96862997 to 96873954 10957 - lncRNA gene predicted gene 11523
Cpgi3673 11 96863304 to 96863551 247 CpG island CpG island 3673
D11Mit98 11 96863667 to 96863793 126 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 98
D11Dcr19 11 96863673 to 96863792 119 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 19
Gm11524 11 96870195 to 96871001 806 + pseudogene predicted gene 11524
Cpgi3674 11 96875568 to 96876337 769 CpG island CpG island 3674
Tssr110358 11 96880439 to 96880450 11 - TSS region transcription start site region 110358
Gm38961 11 96892501 to 96902535 10034 - lncRNA gene predicted gene, 38961
D11Mit160 11 96895099 to 96895292 193 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 160
D11Dcr20 11 96895122 to 96895269 147 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 20
Cdk5rap3 11 96907426 to 96916496 9070 - protein coding gene CDK5 regulatory subunit associated protein 3
Cpgi3675 11 96915955 to 96916830 875 CpG island CpG island 3675
Tssr110359 11 96916378 to 96916406 28 - TSS region transcription start site region 110359
Tssr110360 11 96916407 to 96916426 19 - TSS region transcription start site region 110360
Tssr110361 11 96916448 to 96916531 83 - TSS region transcription start site region 110361
Gm11525 11 96918941 to 96922493 3552 - antisense lncRNA gene predicted gene 11525
Tssr104579 11 96926150 to 96926156 6 + TSS region transcription start site region 104579
Prr15l 11 96926175 to 96935648 9473 + protein coding gene proline rich 15-like
Tssr104580 11 96926180 to 96926188 8 + TSS region transcription start site region 104580
Tssr104581 11 96929260 to 96929324 64 + TSS region transcription start site region 104581
Tssr104582 11 96929325 to 96929349 24 + TSS region transcription start site region 104582
Tssr104583 11 96929367 to 96929383 16 + TSS region transcription start site region 104583
Tssr104584 11 96929409 to 96929421 12 + TSS region transcription start site region 104584
Tssr104585 11 96931508 to 96931516 8 + TSS region transcription start site region 104585
Tssr3660 11 96934964 to 96934969 5 - TSS region transcription start site region 3660
Tssr110362 11 96936367 to 96936395 28 - TSS region transcription start site region 110362
Pnpo 11 96937825 to 96943986 6161 - protein coding gene pyridoxine 5'-phosphate oxidase
Cpgi3676 11 96943536 to 96944397 861 CpG island CpG island 3676
Tssr110363 11 96943773 to 96943784 11 - TSS region transcription start site region 110363
Tssr110364 11 96943786 to 96943797 11 - TSS region transcription start site region 110364
Tssr110365 11 96943800 to 96943850 50 - TSS region transcription start site region 110365
Tssr110366 11 96943931 to 96943940 9 - TSS region transcription start site region 110366
Tssr110367 11 96943945 to 96944023 78 - TSS region transcription start site region 110367
Tssr104586 11 96944142 to 96944222 80 + TSS region transcription start site region 104586
D030028A08Rik 11 96944146 to 96965060 20914 + lncRNA gene RIKEN cDNA D030028A08 gene
Tssr104587 11 96944234 to 96944285 51 + TSS region transcription start site region 104587
Tssr104588 11 96944286 to 96944299 13 + TSS region transcription start site region 104588
Tssr110368 11 96944933 to 96944946 13 - TSS region transcription start site region 110368
Sp2 11 96953332 to 96982129 28797 - protein coding gene Sp2 transcription factor
Tssr110369 11 96953688 to 96953711 23 - TSS region transcription start site region 110369
Tssr110370 11 96953732 to 96953744 12 - TSS region transcription start site region 110370
Tssr110371 11 96955919 to 96955957 38 - TSS region transcription start site region 110371
Tssr110372 11 96955964 to 96955975 11 - TSS region transcription start site region 110372
Tssr110373 11 96956193 to 96956221 28 - TSS region transcription start site region 110373
Tssr110374 11 96956223 to 96956236 13 - TSS region transcription start site region 110374
D11Jpk3 11 96958225 to 96958528 303 DNA segment DNA segment, Chr 11, Japan, Kominami 3
Tssr104589 11 96967019 to 96967033 14 + TSS region transcription start site region 104589
Tssr110375 11 96968655 to 96968673 18 - TSS region transcription start site region 110375
Tssr110376 11 96968705 to 96968718 13 - TSS region transcription start site region 110376
Cpgi3677 11 96977064 to 96978372 1308 CpG island CpG island 3677
Tssr110377 11 96977290 to 96977328 38 - TSS region transcription start site region 110377
Tssr110378 11 96977345 to 96977384 39 - TSS region transcription start site region 110378
Tssr110379 11 96977660 to 96977693 33 - TSS region transcription start site region 110379
Gm30809 11 96977701 to 96984111 6410 + lncRNA gene predicted gene, 30809
Cpgi3678 11 96988016 to 96988261 245 CpG island CpG island 3678
Tssr104590 11 96988072 to 96988082 10 + TSS region transcription start site region 104590
Tssr110380 11 96988486 to 96988488 2 - TSS region transcription start site region 110380
Cpgi3679 11 96997223 to 96997700 477 CpG island CpG island 3679
D11Mit67 11 97006867 to 97007000 133 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 67
Estq3 11 97006867 to 99436202 2429335 QTL estradiol regulated response QTL 3
Sp6 11 97013569 to 97024739 11170 + protein coding gene trans-acting transcription factor 6
Cpgi3680 11 97018152 to 97019822 1670 CpG island CpG island 3680
Tssr104591 11 97018758 to 97018765 7 + TSS region transcription start site region 104591
Tssr104592 11 97018819 to 97018827 8 + TSS region transcription start site region 104592
Gm11532 11 97020508 to 97026248 5740 - lncRNA gene predicted gene 11532
Cpgi3681 11 97021347 to 97022726 1379 CpG island CpG island 3681