Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:96320583-96770598

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(11Chad-Hoxb1)19Brd 11 94565074 to 96368256 1803182 complex/cluster/region deletion, Chr 11, Bradley 19
Del(11Hoxb3-Hoxb4)1Karl 11 96318267 to 96347930 29663 cytogenetic marker deletion, Chr 11, Stefan Karlsson 1
Hoxb4 11 96318267 to 96321638 3371 + protein coding gene homeobox B4
Cpgi3649 11 96320676 to 96320975 299 CpG island CpG island 3649
Tssr104514 11 96323253 to 96323255 2 + TSS region transcription start site region 104514
Hoxb3 11 96323326 to 96347930 24604 + protein coding gene homeobox B3
Cpgi3650 11 96325951 to 96326250 299 CpG island CpG island 3650
Tssr104515 11 96332433 to 96332457 24 + TSS region transcription start site region 104515
Tssr104516 11 96332541 to 96332546 5 + TSS region transcription start site region 104516
Cpgi3651 11 96332624 to 96333525 901 CpG island CpG island 3651
Tssr104517 11 96332817 to 96332840 23 + TSS region transcription start site region 104517
Gm11536 11 96336299 to 96342108 5809 - antisense lncRNA gene predicted gene 11536
Tssr104518 11 96340803 to 96340813 10 + TSS region transcription start site region 104518
Cpgi3652 11 96340812 to 96340970 158 CpG island CpG island 3652
Cpgi3653 11 96341871 to 96342331 460 CpG island CpG island 3653
Hoxb3os 11 96343033 to 96353149 10116 - antisense lncRNA gene homeobox B3 and homeobox B2, opposite strand
Cpgi3654 11 96344051 to 96344615 564 CpG island CpG island 3654
Cpgi3655 11 96345367 to 96346376 1009 CpG island CpG island 3655
Tssr110329 11 96347295 to 96347330 35 - TSS region transcription start site region 110329
Tssr110330 11 96347346 to 96347359 13 - TSS region transcription start site region 110330
Tssr110331 11 96350073 to 96350127 54 - TSS region transcription start site region 110331
Tssr110332 11 96350188 to 96350199 11 - TSS region transcription start site region 110332
Tssr104519 11 96351596 to 96351635 39 + TSS region transcription start site region 104519
Hoxb2 11 96351632 to 96354020 2388 + protein coding gene homeobox B2
Tssr104520 11 96351869 to 96351874 5 + TSS region transcription start site region 104520
Tssr104521 11 96351898 to 96351908 10 + TSS region transcription start site region 104521
Tssr104522 11 96351950 to 96351968 18 + TSS region transcription start site region 104522
Tssr104523 11 96351974 to 96352018 44 + TSS region transcription start site region 104523
Cpgi3656 11 96352012 to 96352176 164 CpG island CpG island 3656
Tssr104524 11 96352054 to 96352070 16 + TSS region transcription start site region 104524
Tssr104525 11 96352120 to 96352138 18 + TSS region transcription start site region 104525
Cpgi3657 11 96352668 to 96353714 1046 CpG island CpG island 3657
Tssr104526 11 96352864 to 96352881 17 + TSS region transcription start site region 104526
Tssr104527 11 96352886 to 96352900 14 + TSS region transcription start site region 104527
Tssr104528 11 96353075 to 96353086 11 + TSS region transcription start site region 104528
Tssr104529 11 96353127 to 96353140 13 + TSS region transcription start site region 104529
Tssr104530 11 96353155 to 96353164 9 + TSS region transcription start site region 104530
Tssr104531 11 96353324 to 96353342 18 + TSS region transcription start site region 104531
Cpgi3658 11 96354464 to 96354782 318 CpG island CpG island 3658
Tssr104532 11 96365714 to 96365736 22 + TSS region transcription start site region 104532
Tssr104533 11 96365740 to 96365751 11 + TSS region transcription start site region 104533
Hoxb1 11 96365752 to 96368256 2504 + protein coding gene homeobox B1
Tssr104534 11 96365754 to 96365761 7 + TSS region transcription start site region 104534
Cpgi3659 11 96365833 to 96366379 546 CpG island CpG island 3659
Tssr104535 11 96365862 to 96365899 37 + TSS region transcription start site region 104535
Cpgi3660 11 96366667 to 96367098 431 CpG island CpG island 3660
Gm11531 11 96392112 to 96392666 554 + pseudogene predicted gene 11531
Cpgi3661 11 96407646 to 96408023 377 CpG island CpG island 3661
Cpgi3662 11 96447970 to 96448367 397 CpG island CpG island 3662
Gm11529 11 96448323 to 96464547 16224 - lncRNA gene predicted gene 11529
Tssr104536 11 96464043 to 96464048 5 + TSS region transcription start site region 104536
Cpgi3663 11 96464319 to 96464969 650 CpG island CpG island 3663
Tssr104537 11 96464587 to 96464637 50 + TSS region transcription start site region 104537
Skap1 11 96464593 to 96759130 294537 + protein coding gene src family associated phosphoprotein 1
Tssr104538 11 96464649 to 96464660 11 + TSS region transcription start site region 104538
Tssr110333 11 96467118 to 96467123 5 - TSS region transcription start site region 110333
Tssr104539 11 96467257 to 96467276 19 + TSS region transcription start site region 104539
Tssr104540 11 96487542 to 96487545 3 + TSS region transcription start site region 104540
Gm38960 11 96492963 to 96540109 47146 - lncRNA gene predicted gene, 38960
Cpgi3664 11 96526928 to 96527262 334 CpG island CpG island 3664
Tssr104541 11 96532881 to 96532883 2 + TSS region transcription start site region 104541
Tssr104542 11 96542431 to 96542434 3 + TSS region transcription start site region 104542
Tssr104543 11 96544719 to 96544723 4 + TSS region transcription start site region 104543
Tssr104544 11 96545373 to 96545395 22 + TSS region transcription start site region 104544
Tssr104545 11 96545426 to 96545433 7 + TSS region transcription start site region 104545
Tssr104546 11 96545434 to 96545449 15 + TSS region transcription start site region 104546
Tssr104547 11 96545476 to 96545481 5 + TSS region transcription start site region 104547
Tssr104548 11 96545570 to 96545581 11 + TSS region transcription start site region 104548
Tssr104549 11 96545583 to 96545598 15 + TSS region transcription start site region 104549
Tssr104550 11 96545641 to 96545649 8 + TSS region transcription start site region 104550
Tssr104551 11 96545669 to 96545689 20 + TSS region transcription start site region 104551
Tssr104552 11 96545690 to 96545697 7 + TSS region transcription start site region 104552
Tssr104553 11 96547027 to 96547031 4 + TSS region transcription start site region 104553
Tssr104554 11 96567486 to 96567490 4 + TSS region transcription start site region 104554
Cpgi3665 11 96570336 to 96570871 535 CpG island CpG island 3665
Tssr104555 11 96572481 to 96572486 5 + TSS region transcription start site region 104555
Tssr104556 11 96574871 to 96574872 1 + TSS region transcription start site region 104556
Tssr104557 11 96574896 to 96574898 2 + TSS region transcription start site region 104557
Tssr104558 11 96603776 to 96603778 2 + TSS region transcription start site region 104558
5830435N17Rik 11 96610739 to 96611330 591 unclassified gene RIKEN cDNA 5830435N17 gene
Tssr104559 11 96618503 to 96618506 3 + TSS region transcription start site region 104559
Gm38448 11 96626946 to 96678375 51429 + lncRNA gene predicted gene, 38448
Tssr104560 11 96633767 to 96633795 28 + TSS region transcription start site region 104560
Tssr104561 11 96639183 to 96639185 2 + TSS region transcription start site region 104561
Tssr104562 11 96658634 to 96658679 45 + TSS region transcription start site region 104562
Tssr104563 11 96658762 to 96658773 11 + TSS region transcription start site region 104563
Tssr104564 11 96693603 to 96693614 11 + TSS region transcription start site region 104564
2010300F17Rik 11 96712982 to 96747436 34454 - lincRNA gene RIKEN cDNA 2010300F17 gene
Tssr110334 11 96713349 to 96713405 56 - TSS region transcription start site region 110334
Tssr110335 11 96713410 to 96713423 13 - TSS region transcription start site region 110335
Cpgi3666 11 96724229 to 96724405 176 CpG island CpG island 3666
Tssr104565 11 96739926 to 96739927 1 + TSS region transcription start site region 104565
Tssr104566 11 96742955 to 96742959 4 + TSS region transcription start site region 104566
Tssr104567 11 96747074 to 96747106 32 + TSS region transcription start site region 104567
Tssr110336 11 96747405 to 96747416 11 - TSS region transcription start site region 110336
Tssr110337 11 96747419 to 96747432 13 - TSS region transcription start site region 110337
Tssr110338 11 96747654 to 96747660 6 - TSS region transcription start site region 110338
Gm11537 11 96766802 to 96768269 1467 + antisense lncRNA gene predicted gene 11537
Snx11 11 96767555 to 96777559 10004 - protein coding gene sorting nexin 11