Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:96317112-96467666

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(11Chad-Hoxb1)19Brd 11 94565074 to 96368256 1803182 complex/cluster/region deletion, Chr 11, Bradley 19
Mir10a 11 96317165 to 96317274 109 + miRNA gene microRNA 10a
Cpgi3646 11 96317901 to 96318182 281 CpG island CpG island 3646
Del(11Hoxb3-Hoxb4)1Karl 11 96318267 to 96347930 29663 cytogenetic marker deletion, Chr 11, Stefan Karlsson 1
Hoxb4 11 96318267 to 96321638 3371 + protein coding gene homeobox B4
Cpgi3647 11 96318592 to 96319551 959 CpG island CpG island 3647
Tssr104509 11 96318650 to 96318718 68 + TSS region transcription start site region 104509
Tssr104510 11 96318731 to 96318745 14 + TSS region transcription start site region 104510
Tssr104511 11 96318755 to 96318775 20 + TSS region transcription start site region 104511
Tssr104512 11 96318828 to 96318845 17 + TSS region transcription start site region 104512
Tssr104513 11 96318861 to 96318872 11 + TSS region transcription start site region 104513
Cpgi3648 11 96319953 to 96320391 438 CpG island CpG island 3648
Cpgi3649 11 96320676 to 96320975 299 CpG island CpG island 3649
Tssr104514 11 96323253 to 96323255 2 + TSS region transcription start site region 104514
Hoxb3 11 96323326 to 96347930 24604 + protein coding gene homeobox B3
Cpgi3650 11 96325951 to 96326250 299 CpG island CpG island 3650
Tssr104515 11 96332433 to 96332457 24 + TSS region transcription start site region 104515
Tssr104516 11 96332541 to 96332546 5 + TSS region transcription start site region 104516
Cpgi3651 11 96332624 to 96333525 901 CpG island CpG island 3651
Tssr104517 11 96332817 to 96332840 23 + TSS region transcription start site region 104517
Gm11536 11 96336299 to 96342108 5809 - antisense lncRNA gene predicted gene 11536
Tssr104518 11 96340803 to 96340813 10 + TSS region transcription start site region 104518
Cpgi3652 11 96340812 to 96340970 158 CpG island CpG island 3652
Cpgi3653 11 96341871 to 96342331 460 CpG island CpG island 3653
Hoxb3os 11 96343033 to 96353149 10116 - antisense lncRNA gene homeobox B3 and homeobox B2, opposite strand
Cpgi3654 11 96344051 to 96344615 564 CpG island CpG island 3654
Cpgi3655 11 96345367 to 96346376 1009 CpG island CpG island 3655
Tssr110329 11 96347295 to 96347330 35 - TSS region transcription start site region 110329
Tssr110330 11 96347346 to 96347359 13 - TSS region transcription start site region 110330
Tssr110331 11 96350073 to 96350127 54 - TSS region transcription start site region 110331
Tssr110332 11 96350188 to 96350199 11 - TSS region transcription start site region 110332
Tssr104519 11 96351596 to 96351635 39 + TSS region transcription start site region 104519
Hoxb2 11 96351632 to 96354020 2388 + protein coding gene homeobox B2
Tssr104520 11 96351869 to 96351874 5 + TSS region transcription start site region 104520
Tssr104521 11 96351898 to 96351908 10 + TSS region transcription start site region 104521
Tssr104522 11 96351950 to 96351968 18 + TSS region transcription start site region 104522
Tssr104523 11 96351974 to 96352018 44 + TSS region transcription start site region 104523
Cpgi3656 11 96352012 to 96352176 164 CpG island CpG island 3656
Tssr104524 11 96352054 to 96352070 16 + TSS region transcription start site region 104524
Tssr104525 11 96352120 to 96352138 18 + TSS region transcription start site region 104525
Cpgi3657 11 96352668 to 96353714 1046 CpG island CpG island 3657
Tssr104526 11 96352864 to 96352881 17 + TSS region transcription start site region 104526
Tssr104527 11 96352886 to 96352900 14 + TSS region transcription start site region 104527
Tssr104528 11 96353075 to 96353086 11 + TSS region transcription start site region 104528
Tssr104529 11 96353127 to 96353140 13 + TSS region transcription start site region 104529
Tssr104530 11 96353155 to 96353164 9 + TSS region transcription start site region 104530
Tssr104531 11 96353324 to 96353342 18 + TSS region transcription start site region 104531
Cpgi3658 11 96354464 to 96354782 318 CpG island CpG island 3658
Tssr104532 11 96365714 to 96365736 22 + TSS region transcription start site region 104532
Tssr104533 11 96365740 to 96365751 11 + TSS region transcription start site region 104533
Hoxb1 11 96365752 to 96368256 2504 + protein coding gene homeobox B1
Tssr104534 11 96365754 to 96365761 7 + TSS region transcription start site region 104534
Cpgi3659 11 96365833 to 96366379 546 CpG island CpG island 3659
Tssr104535 11 96365862 to 96365899 37 + TSS region transcription start site region 104535
Cpgi3660 11 96366667 to 96367098 431 CpG island CpG island 3660
Gm11531 11 96392112 to 96392666 554 + pseudogene predicted gene 11531
Cpgi3661 11 96407646 to 96408023 377 CpG island CpG island 3661
Cpgi3662 11 96447970 to 96448367 397 CpG island CpG island 3662
Gm11529 11 96448323 to 96464547 16224 - lncRNA gene predicted gene 11529
Tssr104536 11 96464043 to 96464048 5 + TSS region transcription start site region 104536
Cpgi3663 11 96464319 to 96464969 650 CpG island CpG island 3663
Tssr104537 11 96464587 to 96464637 50 + TSS region transcription start site region 104537
Skap1 11 96464593 to 96759130 294537 + protein coding gene src family associated phosphoprotein 1
Tssr104538 11 96464649 to 96464660 11 + TSS region transcription start site region 104538
Tssr110333 11 96467118 to 96467123 5 - TSS region transcription start site region 110333
Tssr104539 11 96467257 to 96467276 19 + TSS region transcription start site region 104539