Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:96292112-96492666

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(11Chad-Hoxb1)19Brd 11 94565074 to 96368256 1803182 complex/cluster/region deletion, Chr 11, Bradley 19
Hoxb5os 11 96291037 to 96306910 15873 - antisense lncRNA gene homeobox B5 and homeobox B6, opposite strand
Tssr104478 11 96292153 to 96292159 6 + TSS region transcription start site region 104478
Tssr104479 11 96292453 to 96292508 55 + TSS region transcription start site region 104479
Hoxb6 11 96292710 to 96301569 8859 + protein coding gene homeobox B6
Cpgi3639 11 96293302 to 96293604 302 CpG island CpG island 3639
Cpgi3640 11 96294537 to 96295040 503 CpG island CpG island 3640
2700088M07Rik 11 96294853 to 96295406 553 unclassified gene RIKEN cDNA 2700088M07 gene
Tssr110326 11 96295405 to 96295407 2 - TSS region transcription start site region 110326
Tssr104480 11 96298754 to 96298770 16 + TSS region transcription start site region 104480
Tssr104481 11 96298784 to 96298798 14 + TSS region transcription start site region 104481
Tssr104482 11 96298805 to 96298821 16 + TSS region transcription start site region 104482
Cpgi3641 11 96298925 to 96300141 1216 CpG island CpG island 3641
Tssr104483 11 96299046 to 96299083 37 + TSS region transcription start site region 104483
Tssr104484 11 96299089 to 96299102 13 + TSS region transcription start site region 104484
Tssr104485 11 96299112 to 96299129 17 + TSS region transcription start site region 104485
Tssr104486 11 96299137 to 96299148 11 + TSS region transcription start site region 104486
Tssr104487 11 96299207 to 96299222 15 + TSS region transcription start site region 104487
Tssr104488 11 96299223 to 96299252 29 + TSS region transcription start site region 104488
Tssr3658 11 96299253 to 96299265 12 + TSS region transcription start site region 3658
Cpgi3642 11 96300547 to 96301134 587 CpG island CpG island 3642
Cpgi3643 11 96303085 to 96304244 1159 CpG island CpG island 3643
Tssr104489 11 96303507 to 96303551 44 + TSS region transcription start site region 104489
Hoxb5 11 96303512 to 96306121 2609 + protein coding gene homeobox B5
Tssr104490 11 96303554 to 96303561 7 + TSS region transcription start site region 104490
Tssr104491 11 96303573 to 96303580 7 + TSS region transcription start site region 104491
Tssr104492 11 96303591 to 96303605 14 + TSS region transcription start site region 104492
Tssr104493 11 96303614 to 96303633 19 + TSS region transcription start site region 104493
Tssr104494 11 96303650 to 96303718 68 + TSS region transcription start site region 104494
Tssr104495 11 96303725 to 96303759 34 + TSS region transcription start site region 104495
Tssr104496 11 96303897 to 96303916 19 + TSS region transcription start site region 104496
Tssr104497 11 96304024 to 96304041 17 + TSS region transcription start site region 104497
Tssr104498 11 96304055 to 96304074 19 + TSS region transcription start site region 104498
Tssr104499 11 96304080 to 96304092 12 + TSS region transcription start site region 104499
Tssr104500 11 96304122 to 96304139 17 + TSS region transcription start site region 104500
Cpgi3644 11 96304843 to 96305246 403 CpG island CpG island 3644
Tssr104501 11 96306539 to 96306543 4 + TSS region transcription start site region 104501
Tssr110327 11 96306901 to 96306915 14 - TSS region transcription start site region 110327
Tssr104502 11 96307052 to 96307055 3 + TSS region transcription start site region 104502
Tssr104503 11 96307069 to 96307096 27 + TSS region transcription start site region 104503
Tssr104504 11 96307117 to 96307128 11 + TSS region transcription start site region 104504
Tssr104505 11 96307131 to 96307155 24 + TSS region transcription start site region 104505
Tssr110328 11 96308873 to 96308891 18 - TSS region transcription start site region 110328
Tssr104506 11 96314658 to 96314664 6 + TSS region transcription start site region 104506
Cpgi3645 11 96314763 to 96315078 315 CpG island CpG island 3645
Tssr104507 11 96314779 to 96314790 11 + TSS region transcription start site region 104507
Tssr104508 11 96314796 to 96314835 39 + TSS region transcription start site region 104508
Mir10a 11 96317165 to 96317274 109 + miRNA gene microRNA 10a
Cpgi3646 11 96317901 to 96318182 281 CpG island CpG island 3646
Hoxb4 11 96318267 to 96321638 3371 + protein coding gene homeobox B4
Del(11Hoxb3-Hoxb4)1Karl 11 96318267 to 96347930 29663 cytogenetic marker deletion, Chr 11, Stefan Karlsson 1
Cpgi3647 11 96318592 to 96319551 959 CpG island CpG island 3647
Tssr104509 11 96318650 to 96318718 68 + TSS region transcription start site region 104509
Tssr104510 11 96318731 to 96318745 14 + TSS region transcription start site region 104510
Tssr104511 11 96318755 to 96318775 20 + TSS region transcription start site region 104511
Tssr104512 11 96318828 to 96318845 17 + TSS region transcription start site region 104512
Tssr104513 11 96318861 to 96318872 11 + TSS region transcription start site region 104513
Cpgi3648 11 96319953 to 96320391 438 CpG island CpG island 3648
Cpgi3649 11 96320676 to 96320975 299 CpG island CpG island 3649
Tssr104514 11 96323253 to 96323255 2 + TSS region transcription start site region 104514
Hoxb3 11 96323326 to 96347930 24604 + protein coding gene homeobox B3
Cpgi3650 11 96325951 to 96326250 299 CpG island CpG island 3650
Tssr104515 11 96332433 to 96332457 24 + TSS region transcription start site region 104515
Tssr104516 11 96332541 to 96332546 5 + TSS region transcription start site region 104516
Cpgi3651 11 96332624 to 96333525 901 CpG island CpG island 3651
Tssr104517 11 96332817 to 96332840 23 + TSS region transcription start site region 104517
Gm11536 11 96336299 to 96342108 5809 - antisense lncRNA gene predicted gene 11536
Tssr104518 11 96340803 to 96340813 10 + TSS region transcription start site region 104518
Cpgi3652 11 96340812 to 96340970 158 CpG island CpG island 3652
Cpgi3653 11 96341871 to 96342331 460 CpG island CpG island 3653
Hoxb3os 11 96343033 to 96353149 10116 - antisense lncRNA gene homeobox B3 and homeobox B2, opposite strand
Cpgi3654 11 96344051 to 96344615 564 CpG island CpG island 3654
Cpgi3655 11 96345367 to 96346376 1009 CpG island CpG island 3655
Tssr110329 11 96347295 to 96347330 35 - TSS region transcription start site region 110329
Tssr110330 11 96347346 to 96347359 13 - TSS region transcription start site region 110330
Tssr110331 11 96350073 to 96350127 54 - TSS region transcription start site region 110331
Tssr110332 11 96350188 to 96350199 11 - TSS region transcription start site region 110332
Tssr104519 11 96351596 to 96351635 39 + TSS region transcription start site region 104519
Hoxb2 11 96351632 to 96354020 2388 + protein coding gene homeobox B2
Tssr104520 11 96351869 to 96351874 5 + TSS region transcription start site region 104520
Tssr104521 11 96351898 to 96351908 10 + TSS region transcription start site region 104521
Tssr104522 11 96351950 to 96351968 18 + TSS region transcription start site region 104522
Tssr104523 11 96351974 to 96352018 44 + TSS region transcription start site region 104523
Cpgi3656 11 96352012 to 96352176 164 CpG island CpG island 3656
Tssr104524 11 96352054 to 96352070 16 + TSS region transcription start site region 104524
Tssr104525 11 96352120 to 96352138 18 + TSS region transcription start site region 104525
Cpgi3657 11 96352668 to 96353714 1046 CpG island CpG island 3657
Tssr104526 11 96352864 to 96352881 17 + TSS region transcription start site region 104526
Tssr104527 11 96352886 to 96352900 14 + TSS region transcription start site region 104527
Tssr104528 11 96353075 to 96353086 11 + TSS region transcription start site region 104528
Tssr104529 11 96353127 to 96353140 13 + TSS region transcription start site region 104529
Tssr104530 11 96353155 to 96353164 9 + TSS region transcription start site region 104530
Tssr104531 11 96353324 to 96353342 18 + TSS region transcription start site region 104531
Cpgi3658 11 96354464 to 96354782 318 CpG island CpG island 3658
Tssr104532 11 96365714 to 96365736 22 + TSS region transcription start site region 104532
Tssr104533 11 96365740 to 96365751 11 + TSS region transcription start site region 104533
Hoxb1 11 96365752 to 96368256 2504 + protein coding gene homeobox B1
Tssr104534 11 96365754 to 96365761 7 + TSS region transcription start site region 104534
Cpgi3659 11 96365833 to 96366379 546 CpG island CpG island 3659
Tssr104535 11 96365862 to 96365899 37 + TSS region transcription start site region 104535
Cpgi3660 11 96366667 to 96367098 431 CpG island CpG island 3660
Gm11531 11 96392112 to 96392666 554 + pseudogene predicted gene 11531
Cpgi3661 11 96407646 to 96408023 377 CpG island CpG island 3661
Cpgi3662 11 96447970 to 96448367 397 CpG island CpG island 3662
Gm11529 11 96448323 to 96464547 16224 - lncRNA gene predicted gene 11529
Tssr104536 11 96464043 to 96464048 5 + TSS region transcription start site region 104536
Cpgi3663 11 96464319 to 96464969 650 CpG island CpG island 3663
Tssr104537 11 96464587 to 96464637 50 + TSS region transcription start site region 104537
Skap1 11 96464593 to 96759130 294537 + protein coding gene src family associated phosphoprotein 1
Tssr104538 11 96464649 to 96464660 11 + TSS region transcription start site region 104538
Tssr110333 11 96467118 to 96467123 5 - TSS region transcription start site region 110333
Tssr104539 11 96467257 to 96467276 19 + TSS region transcription start site region 104539
Tssr104540 11 96487542 to 96487545 3 + TSS region transcription start site region 104540