Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:96262529-96302554

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Par1 11 94172953 to 96276595 2103642 QTL pulmonary adenoma resistance 1
Mvwf 11 95568818 to 96285776 716958 QTL modifier of von Willebrand factor
Gm53 11 96251660 to 96264484 12824 + lincRNA gene predicted gene 53
Tssr104447 11 96263891 to 96263911 20 + TSS region transcription start site region 104447
Tssr104448 11 96264268 to 96264284 16 + TSS region transcription start site region 104448
Tssr3657 11 96264317 to 96264326 9 + TSS region transcription start site region 3657
Mir196a-1 11 96265164 to 96265265 101 + miRNA gene microRNA 196a-1
Cpgi3630 11 96270114 to 96270312 198 CpG island CpG island 3630
Cpgi3631 11 96270845 to 96273082 2237 CpG island CpG island 3631
Tssr104449 11 96271142 to 96271153 11 + TSS region transcription start site region 104449
Tssr104450 11 96271209 to 96271224 15 + TSS region transcription start site region 104450
Tssr104451 11 96271230 to 96271239 9 + TSS region transcription start site region 104451
Tssr104452 11 96271323 to 96271338 15 + TSS region transcription start site region 104452
Tssr104453 11 96271453 to 96271482 29 + TSS region transcription start site region 104453
Hoxb9 11 96271457 to 96276595 5138 + protein coding gene homeobox B9
Tssr104454 11 96271616 to 96271657 41 + TSS region transcription start site region 104454
Tssr104455 11 96271917 to 96271933 16 + TSS region transcription start site region 104455
Tssr104456 11 96271935 to 96271961 26 + TSS region transcription start site region 104456
Cpgi3632 11 96277404 to 96277598 194 CpG island CpG island 3632
Tssr104457 11 96279380 to 96279406 26 + TSS region transcription start site region 104457
Cpgi3633 11 96279524 to 96279942 418 CpG island CpG island 3633
Tssr110324 11 96280566 to 96280570 4 - TSS region transcription start site region 110324
Hoxb8 11 96281905 to 96285315 3410 + protein coding gene homeobox B8
Tssr104458 11 96282231 to 96282242 11 + TSS region transcription start site region 104458
Tssr104459 11 96282352 to 96282411 59 + TSS region transcription start site region 104459
Tssr104460 11 96282414 to 96282431 17 + TSS region transcription start site region 104460
Tssr104461 11 96282529 to 96282554 25 + TSS region transcription start site region 104461
Tssr104462 11 96282648 to 96282721 73 + TSS region transcription start site region 104462
Tssr104463 11 96282736 to 96282751 15 + TSS region transcription start site region 104463
Cpgi3634 11 96282843 to 96283447 604 CpG island CpG island 3634
Tssr104464 11 96282968 to 96282994 26 + TSS region transcription start site region 104464
Tssr104465 11 96283023 to 96283040 17 + TSS region transcription start site region 104465
Tssr104466 11 96283262 to 96283289 27 + TSS region transcription start site region 104466
Cpgi3635 11 96284014 to 96285002 988 CpG island CpG island 3635
Tssr104467 11 96284048 to 96284075 27 + TSS region transcription start site region 104467
Tssr104468 11 96284079 to 96284093 14 + TSS region transcription start site region 104468
Tssr104469 11 96284136 to 96284203 67 + TSS region transcription start site region 104469
Tssr104470 11 96284223 to 96284242 19 + TSS region transcription start site region 104470
Tssr104471 11 96284772 to 96284786 14 + TSS region transcription start site region 104471
Tssr104472 11 96285227 to 96285230 3 + TSS region transcription start site region 104472
Tssr104473 11 96285568 to 96285591 23 + TSS region transcription start site region 104473
Tssr104474 11 96285593 to 96285627 34 + TSS region transcription start site region 104474
D11Mit54 11 96285639 to 96285776 137 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 54
Cpgi3636 11 96285838 to 96286008 170 CpG island CpG island 3636
Tssr104475 11 96286638 to 96286653 15 + TSS region transcription start site region 104475
Hoxb7 11 96286646 to 96290163 3517 + protein coding gene homeobox B7
Cpgi3637 11 96286712 to 96287477 765 CpG island CpG island 3637
Tssr104476 11 96286778 to 96286791 13 + TSS region transcription start site region 104476
Tssr104477 11 96287056 to 96287079 23 + TSS region transcription start site region 104477
Cpgi3638 11 96289376 to 96289622 246 CpG island CpG island 3638
Tssr110325 11 96289525 to 96289528 3 - TSS region transcription start site region 110325
Hoxb5os 11 96291037 to 96306910 15873 - antisense lncRNA gene homeobox B5 and homeobox B6, opposite strand
Tssr104478 11 96292153 to 96292159 6 + TSS region transcription start site region 104478
Tssr104479 11 96292453 to 96292508 55 + TSS region transcription start site region 104479
Hoxb6 11 96292710 to 96301569 8859 + protein coding gene homeobox B6
Cpgi3639 11 96293302 to 96293604 302 CpG island CpG island 3639
Cpgi3640 11 96294537 to 96295040 503 CpG island CpG island 3640
2700088M07Rik 11 96294853 to 96295406 553 unclassified gene RIKEN cDNA 2700088M07 gene
Tssr110326 11 96295405 to 96295407 2 - TSS region transcription start site region 110326
Tssr104480 11 96298754 to 96298770 16 + TSS region transcription start site region 104480
Tssr104481 11 96298784 to 96298798 14 + TSS region transcription start site region 104481
Tssr104482 11 96298805 to 96298821 16 + TSS region transcription start site region 104482
Cpgi3641 11 96298925 to 96300141 1216 CpG island CpG island 3641
Tssr104483 11 96299046 to 96299083 37 + TSS region transcription start site region 104483
Tssr104484 11 96299089 to 96299102 13 + TSS region transcription start site region 104484
Tssr104485 11 96299112 to 96299129 17 + TSS region transcription start site region 104485
Tssr104486 11 96299137 to 96299148 11 + TSS region transcription start site region 104486
Tssr104487 11 96299207 to 96299222 15 + TSS region transcription start site region 104487
Tssr104488 11 96299223 to 96299252 29 + TSS region transcription start site region 104488
Tssr3658 11 96299253 to 96299265 12 + TSS region transcription start site region 3658
Cpgi3642 11 96300547 to 96301134 587 CpG island CpG island 3642
Pas5b 11 108915558 to 96285639 -12629919 QTL pulmonary adenoma susceptibility 5b