Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:96109135-96293626

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108 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Par1 11 94172953 to 96276595 2103642 QTL pulmonary adenoma resistance 1
Mvwf 11 95568818 to 96285776 716958 QTL modifier of von Willebrand factor
Calcoco2 11 96099326 to 96111964 12638 - protein coding gene calcium binding and coiled-coil domain 2
Tssr110321 11 96111958 to 96111992 34 - TSS region transcription start site region 110321
Tssr104427 11 96124082 to 96124111 29 + TSS region transcription start site region 104427
Cpgi3616 11 96124188 to 96124807 619 CpG island CpG island 3616
Tssr3656 11 96124433 to 96124444 11 + TSS region transcription start site region 3656
Tssr110322 11 96124458 to 96124478 20 - TSS region transcription start site region 110322
Tssr104428 11 96124485 to 96124506 21 + TSS region transcription start site region 104428
Tssr104429 11 96124513 to 96124541 28 + TSS region transcription start site region 104429
Tssr104430 11 96124755 to 96124781 26 + TSS region transcription start site region 104430
Ttll6 11 96133786 to 96165451 31665 + protein coding gene tubulin tyrosine ligase-like family, member 6
Gm30084 11 96136357 to 96141216 4859 - lncRNA gene predicted gene, 30084
D11Moh24 11 96147064 to 96147325 261 DNA segment DNA segment, Chr 11, KL Mohlke 24
Tssr110323 11 96147641 to 96147646 5 - TSS region transcription start site region 110323
Cpgi3617 11 96153143 to 96153387 244 CpG island CpG island 3617
D11Moh26 11 96169127 to 96169329 202 DNA segment DNA segment, Chr 11, KL Mohlke 26
Cpgi3618 11 96170776 to 96171048 272 CpG island CpG island 3618
Cpgi3619 11 96173113 to 96173414 301 CpG island CpG island 3619
Cpgi3620 11 96175445 to 96175724 279 CpG island CpG island 3620
Tssr104431 11 96177363 to 96177366 3 + TSS region transcription start site region 104431
Gm11535 11 96177551 to 96178800 1249 + lincRNA gene predicted gene 11535
Cpgi3621 11 96177606 to 96178105 499 CpG island CpG island 3621
D11Moh27 11 96177698 to 96177927 229 DNA segment DNA segment, Chr 11, KL Mohlke 27
Cpgi3622 11 96189940 to 96190354 414 CpG island CpG island 3622
Cpgi3623 11 96194170 to 96194950 780 CpG island CpG island 3623
Tssr104432 11 96194279 to 96194287 8 + TSS region transcription start site region 104432
Tssr104433 11 96194299 to 96194314 15 + TSS region transcription start site region 104433
Tssr104434 11 96194319 to 96194326 7 + TSS region transcription start site region 104434
Tssr104435 11 96194336 to 96194351 15 + TSS region transcription start site region 104435
Hoxb13 11 96194361 to 96196599 2238 + protein coding gene homeobox B13
Tssr104436 11 96194367 to 96194379 12 + TSS region transcription start site region 104436
Cpgi3624 11 96195848 to 96196136 288 CpG island CpG island 3624
Gm30134 11 96199135 to 96203626 4491 - lncRNA gene predicted gene, 30134
Gm27898 11 96199751 to 96199830 79 - unclassified non-coding RNA gene predicted gene, 27898
Gm27605 11 96200176 to 96200311 135 - unclassified non-coding RNA gene predicted gene, 27605
Cpgi3625 11 96203258 to 96203837 579 CpG island CpG island 3625
Tssr104437 11 96203441 to 96203458 17 + TSS region transcription start site region 104437
Gm11538 11 96203454 to 96205480 2026 + lncRNA gene predicted gene 11538
Tssr104438 11 96248594 to 96248602 8 + TSS region transcription start site region 104438
Gm11539 11 96248633 to 96249189 556 + pseudogene predicted gene 11539
Tssr104439 11 96251100 to 96251111 11 + TSS region transcription start site region 104439
Tssr104440 11 96251172 to 96251226 54 + TSS region transcription start site region 104440
Tssr104441 11 96251227 to 96251234 7 + TSS region transcription start site region 104441
Tssr104442 11 96251239 to 96251253 14 + TSS region transcription start site region 104442
Tssr104443 11 96251273 to 96251282 9 + TSS region transcription start site region 104443
Cpgi3626 11 96251465 to 96252137 672 CpG island CpG island 3626
Tssr104444 11 96251638 to 96251668 30 + TSS region transcription start site region 104444
Gm53 11 96251660 to 96264484 12824 + lincRNA gene predicted gene 53
Tssr104445 11 96251674 to 96251696 22 + TSS region transcription start site region 104445
Tssr104446 11 96251759 to 96251774 15 + TSS region transcription start site region 104446
Cpgi3627 11 96255293 to 96255957 664 CpG island CpG island 3627
Cpgi3628 11 96260274 to 96260621 347 CpG island CpG island 3628
Cpgi3629 11 96261471 to 96261911 440 CpG island CpG island 3629
Tssr104447 11 96263891 to 96263911 20 + TSS region transcription start site region 104447
Tssr104448 11 96264268 to 96264284 16 + TSS region transcription start site region 104448
Tssr3657 11 96264317 to 96264326 9 + TSS region transcription start site region 3657
Mir196a-1 11 96265164 to 96265265 101 + miRNA gene microRNA 196a-1
Cpgi3630 11 96270114 to 96270312 198 CpG island CpG island 3630
Cpgi3631 11 96270845 to 96273082 2237 CpG island CpG island 3631
Tssr104449 11 96271142 to 96271153 11 + TSS region transcription start site region 104449
Tssr104450 11 96271209 to 96271224 15 + TSS region transcription start site region 104450
Tssr104451 11 96271230 to 96271239 9 + TSS region transcription start site region 104451
Tssr104452 11 96271323 to 96271338 15 + TSS region transcription start site region 104452
Tssr104453 11 96271453 to 96271482 29 + TSS region transcription start site region 104453
Hoxb9 11 96271457 to 96276595 5138 + protein coding gene homeobox B9
Tssr104454 11 96271616 to 96271657 41 + TSS region transcription start site region 104454
Tssr104455 11 96271917 to 96271933 16 + TSS region transcription start site region 104455
Tssr104456 11 96271935 to 96271961 26 + TSS region transcription start site region 104456
Cpgi3632 11 96277404 to 96277598 194 CpG island CpG island 3632
Tssr104457 11 96279380 to 96279406 26 + TSS region transcription start site region 104457
Cpgi3633 11 96279524 to 96279942 418 CpG island CpG island 3633
Tssr110324 11 96280566 to 96280570 4 - TSS region transcription start site region 110324
Hoxb8 11 96281905 to 96285315 3410 + protein coding gene homeobox B8
Tssr104458 11 96282231 to 96282242 11 + TSS region transcription start site region 104458
Tssr104459 11 96282352 to 96282411 59 + TSS region transcription start site region 104459
Tssr104460 11 96282414 to 96282431 17 + TSS region transcription start site region 104460
Tssr104461 11 96282529 to 96282554 25 + TSS region transcription start site region 104461
Tssr104462 11 96282648 to 96282721 73 + TSS region transcription start site region 104462
Tssr104463 11 96282736 to 96282751 15 + TSS region transcription start site region 104463
Cpgi3634 11 96282843 to 96283447 604 CpG island CpG island 3634
Tssr104464 11 96282968 to 96282994 26 + TSS region transcription start site region 104464
Tssr104465 11 96283023 to 96283040 17 + TSS region transcription start site region 104465
Tssr104466 11 96283262 to 96283289 27 + TSS region transcription start site region 104466
Cpgi3635 11 96284014 to 96285002 988 CpG island CpG island 3635
Tssr104467 11 96284048 to 96284075 27 + TSS region transcription start site region 104467
Tssr104468 11 96284079 to 96284093 14 + TSS region transcription start site region 104468
Tssr104469 11 96284136 to 96284203 67 + TSS region transcription start site region 104469
Tssr104470 11 96284223 to 96284242 19 + TSS region transcription start site region 104470
Tssr104471 11 96284772 to 96284786 14 + TSS region transcription start site region 104471
Tssr104472 11 96285227 to 96285230 3 + TSS region transcription start site region 104472
Tssr104473 11 96285568 to 96285591 23 + TSS region transcription start site region 104473
Tssr104474 11 96285593 to 96285627 34 + TSS region transcription start site region 104474
D11Mit54 11 96285639 to 96285776 137 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 54
Cpgi3636 11 96285838 to 96286008 170 CpG island CpG island 3636
Tssr104475 11 96286638 to 96286653 15 + TSS region transcription start site region 104475
Hoxb7 11 96286646 to 96290163 3517 + protein coding gene homeobox B7
Cpgi3637 11 96286712 to 96287477 765 CpG island CpG island 3637
Tssr104476 11 96286778 to 96286791 13 + TSS region transcription start site region 104476
Tssr104477 11 96287056 to 96287079 23 + TSS region transcription start site region 104477
Cpgi3638 11 96289376 to 96289622 246 CpG island CpG island 3638
Tssr110325 11 96289525 to 96289528 3 - TSS region transcription start site region 110325
Hoxb5os 11 96291037 to 96306910 15873 - antisense lncRNA gene homeobox B5 and homeobox B6, opposite strand
Tssr104478 11 96292153 to 96292159 6 + TSS region transcription start site region 104478
Tssr104479 11 96292453 to 96292508 55 + TSS region transcription start site region 104479
Hoxb6 11 96292710 to 96301569 8859 + protein coding gene homeobox B6
Cpgi3639 11 96293302 to 96293604 302 CpG island CpG island 3639
Pas5b 11 108915558 to 96285639 -12629919 QTL pulmonary adenoma susceptibility 5b