Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:95839540-96209558

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dfs2 11 21857364 to 95990405 74133041 QTL dental fluorosis suseptibility 2
Abi3 11 95830074 to 95842476 12402 - protein coding gene ABI gene family, member 3
Tssr110290 11 95842151 to 95842168 17 - TSS region transcription start site region 110290
Gngt2 11 95842219 to 95845734 3515 + protein coding gene guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
Tssr104400 11 95842230 to 95842241 11 + TSS region transcription start site region 104400
Tssr104401 11 95842248 to 95842270 22 + TSS region transcription start site region 104401
Tssr104402 11 95842283 to 95842307 24 + TSS region transcription start site region 104402
Tssr104403 11 95842334 to 95842345 11 + TSS region transcription start site region 104403
Tssr110291 11 95842432 to 95842450 18 - TSS region transcription start site region 110291
Tssr110292 11 95842454 to 95842483 29 - TSS region transcription start site region 110292
Tssr104404 11 95842668 to 95842704 36 + TSS region transcription start site region 104404
Tssr104405 11 95842706 to 95842721 15 + TSS region transcription start site region 104405
Tssr104406 11 95842724 to 95842739 15 + TSS region transcription start site region 104406
Tssr104407 11 95843142 to 95843158 16 + TSS region transcription start site region 104407
Tssr104408 11 95843226 to 95843239 13 + TSS region transcription start site region 104408
Tssr104409 11 95843593 to 95843629 36 + TSS region transcription start site region 104409
Tssr104410 11 95843634 to 95843644 10 + TSS region transcription start site region 104410
Tssr104411 11 95843646 to 95843689 43 + TSS region transcription start site region 104411
Tssr104412 11 95843804 to 95843823 19 + TSS region transcription start site region 104412
Tssr104413 11 95843836 to 95843856 20 + TSS region transcription start site region 104413
Tssr104414 11 95843866 to 95843875 9 + TSS region transcription start site region 104414
Gm38959 11 95854987 to 95858327 3340 - lncRNA gene predicted gene, 38959
Gm11527 11 95858162 to 95859174 1012 - lincRNA gene predicted gene 11527
Cpgi3605 11 95858519 to 95859911 1392 CpG island CpG island 3605
Tssr104415 11 95858854 to 95858880 26 + TSS region transcription start site region 104415
4833417C18Rik 11 95858865 to 95861044 2179 + lncRNA gene RIKEN cDNA 4833417C18 gene
Tssr104416 11 95858881 to 95858901 20 + TSS region transcription start site region 104416
Tssr104417 11 95858905 to 95858932 27 + TSS region transcription start site region 104417
n-TQttg6 11 95859172 to 95859243 71 - tRNA gene nuclear encoded tRNA glutamine 6 (anticodon TTG)
Tssr110293 11 95864640 to 95864648 8 - TSS region transcription start site region 110293
B4galnt2 11 95865943 to 95914891 48948 - protein coding gene beta-1,4-N-acetyl-galactosaminyl transferase 2
Cpgi3606 11 95866564 to 95866975 411 CpG island CpG island 3606
Gm11534 11 95869154 to 95876380 7226 + antisense lncRNA gene predicted gene 11534
Tssr110294 11 95912606 to 95912609 3 - TSS region transcription start site region 110294
Cpgi3607 11 95914402 to 95915779 1377 CpG island CpG island 3607
Tssr110295 11 95914854 to 95914881 27 - TSS region transcription start site region 110295
Tssr110296 11 95914884 to 95914901 17 - TSS region transcription start site region 110296
Tssr104418 11 95918891 to 95918901 10 + TSS region transcription start site region 104418
Gm24725 11 95921102 to 95921226 124 + snRNA gene predicted gene, 24725
Tssr3655 11 95922505 to 95922521 16 + TSS region transcription start site region 3655
Igf2bp1 11 95957163 to 96005940 48777 - protein coding gene insulin-like growth factor 2 mRNA binding protein 1
Tssr110297 11 95960290 to 95960292 2 - TSS region transcription start site region 110297
Tssr110298 11 95961679 to 95961683 4 - TSS region transcription start site region 110298
Mir3063 11 95963292 to 95963383 91 - miRNA gene microRNA 3063
Tssr110299 11 95966452 to 95966457 5 - TSS region transcription start site region 110299
Tssr110300 11 95969963 to 95969987 24 - TSS region transcription start site region 110300
Tssr104419 11 95973153 to 95973155 2 + TSS region transcription start site region 104419
Tssr110301 11 95982562 to 95982573 11 - TSS region transcription start site region 110301
Tssr110302 11 95982583 to 95982593 10 - TSS region transcription start site region 110302
Tssr110303 11 95982602 to 95982627 25 - TSS region transcription start site region 110303
Tssr110304 11 95982630 to 95982646 16 - TSS region transcription start site region 110304
Cpgi3608 11 95990947 to 95991188 241 CpG island CpG island 3608
Cpgi3609 11 95991248 to 95991617 369 CpG island CpG island 3609
2610524E12Rik 11 95997233 to 95997965 732 unclassified gene RIKEN cDNA 2610524E12 gene
Tssr110305 11 96001403 to 96001409 6 - TSS region transcription start site region 110305
Cpgi3610 11 96004420 to 96006253 1833 CpG island CpG island 3610
Tssr110306 11 96005872 to 96005952 80 - TSS region transcription start site region 110306
Gm29202 11 96005889 to 96008055 2166 + antisense lncRNA gene predicted gene 29202
Tssr110307 11 96005961 to 96005972 11 - TSS region transcription start site region 110307
Tssr110308 11 96005975 to 96005985 10 - TSS region transcription start site region 110308
Tssr110309 11 96006157 to 96006173 16 - TSS region transcription start site region 110309
Gm37179 11 96006333 to 96007155 822 - unclassified gene predicted gene, 37179
Cpgi3611 11 96006370 to 96007974 1604 CpG island CpG island 3611
Tssr110310 11 96006983 to 96007019 36 - TSS region transcription start site region 110310
Tssr104420 11 96007322 to 96007343 21 + TSS region transcription start site region 104420
Tssr104421 11 96024540 to 96024558 18 + TSS region transcription start site region 104421
Gip 11 96024545 to 96030831 6286 + protein coding gene gastric inhibitory polypeptide
Gm24949 11 96032678 to 96032892 214 + snoRNA gene predicted gene, 24949
Cpgi3612 11 96034618 to 96035374 756 CpG island CpG island 3612
Snf8 11 96034890 to 96047430 12540 + protein coding gene SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)
Tssr104422 11 96034906 to 96034952 46 + TSS region transcription start site region 104422
Ube2z 11 96047431 to 96065364 17933 - protein coding gene ubiquitin-conjugating enzyme E2Z
Tssr110311 11 96050219 to 96050253 34 - TSS region transcription start site region 110311
D11Moh21 11 96056130 to 96056320 190 DNA segment DNA segment, Chr 11, KL Mohlke 21
Cpgi3613 11 96064441 to 96066027 1586 CpG island CpG island 3613
Tssr110312 11 96064997 to 96065029 32 - TSS region transcription start site region 110312
Tssr110313 11 96065272 to 96065307 35 - TSS region transcription start site region 110313
Tssr110314 11 96065315 to 96065327 12 - TSS region transcription start site region 110314
Tssr110315 11 96065333 to 96065344 11 - TSS region transcription start site region 110315
Tssr110316 11 96065350 to 96065369 19 - TSS region transcription start site region 110316
Atp5g1 11 96072793 to 96075694 2901 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)
Tssr110317 11 96073023 to 96073039 16 - TSS region transcription start site region 110317
Cpgi3614 11 96075211 to 96076243 1032 CpG island CpG island 3614
Tssr110318 11 96075367 to 96075402 35 - TSS region transcription start site region 110318
Tssr110319 11 96075596 to 96075636 40 - TSS region transcription start site region 110319
Tssr110320 11 96075655 to 96075677 22 - TSS region transcription start site region 110320
Tssr104423 11 96076098 to 96076130 32 + TSS region transcription start site region 104423
Tssr104424 11 96081069 to 96081090 21 + TSS region transcription start site region 104424
Tssr104425 11 96081178 to 96081216 38 + TSS region transcription start site region 104425
Gm22423 11 96083673 to 96083856 183 - snRNA gene predicted gene, 22423
Cpgi3615 11 96086524 to 96086745 221 CpG island CpG island 3615
Tssr104426 11 96096967 to 96096971 4 + TSS region transcription start site region 104426
Calcoco2 11 96099326 to 96111964 12638 - protein coding gene calcium binding and coiled-coil domain 2
D11Moh23 11 96105838 to 96106290 452 DNA segment DNA segment, Chr 11, KL Mohlke 23
Tssr110321 11 96111958 to 96111992 34 - TSS region transcription start site region 110321
Tssr104427 11 96124082 to 96124111 29 + TSS region transcription start site region 104427
Cpgi3616 11 96124188 to 96124807 619 CpG island CpG island 3616
Tssr3656 11 96124433 to 96124444 11 + TSS region transcription start site region 3656
Tssr110322 11 96124458 to 96124478 20 - TSS region transcription start site region 110322
Tssr104428 11 96124485 to 96124506 21 + TSS region transcription start site region 104428
Tssr104429 11 96124513 to 96124541 28 + TSS region transcription start site region 104429
Tssr104430 11 96124755 to 96124781 26 + TSS region transcription start site region 104430
Ttll6 11 96133786 to 96165451 31665 + protein coding gene tubulin tyrosine ligase-like family, member 6
Gm30084 11 96136357 to 96141216 4859 - lncRNA gene predicted gene, 30084
D11Moh24 11 96147064 to 96147325 261 DNA segment DNA segment, Chr 11, KL Mohlke 24
Tssr110323 11 96147641 to 96147646 5 - TSS region transcription start site region 110323
Cpgi3617 11 96153143 to 96153387 244 CpG island CpG island 3617
D11Moh26 11 96169127 to 96169329 202 DNA segment DNA segment, Chr 11, KL Mohlke 26
Cpgi3618 11 96170776 to 96171048 272 CpG island CpG island 3618
Cpgi3619 11 96173113 to 96173414 301 CpG island CpG island 3619
Cpgi3620 11 96175445 to 96175724 279 CpG island CpG island 3620
Tssr104431 11 96177363 to 96177366 3 + TSS region transcription start site region 104431
Gm11535 11 96177551 to 96178800 1249 + lincRNA gene predicted gene 11535
Cpgi3621 11 96177606 to 96178105 499 CpG island CpG island 3621
D11Moh27 11 96177698 to 96177927 229 DNA segment DNA segment, Chr 11, KL Mohlke 27
Cpgi3622 11 96189940 to 96190354 414 CpG island CpG island 3622
Cpgi3623 11 96194170 to 96194950 780 CpG island CpG island 3623
Tssr104432 11 96194279 to 96194287 8 + TSS region transcription start site region 104432
Tssr104433 11 96194299 to 96194314 15 + TSS region transcription start site region 104433
Tssr104434 11 96194319 to 96194326 7 + TSS region transcription start site region 104434
Tssr104435 11 96194336 to 96194351 15 + TSS region transcription start site region 104435
Hoxb13 11 96194361 to 96196599 2238 + protein coding gene homeobox B13
Tssr104436 11 96194367 to 96194379 12 + TSS region transcription start site region 104436
Cpgi3624 11 96195848 to 96196136 288 CpG island CpG island 3624
Gm30134 11 96199135 to 96203626 4491 - lncRNA gene predicted gene, 30134
Gm27898 11 96199751 to 96199830 79 - unclassified non-coding RNA gene predicted gene, 27898
Gm27605 11 96200176 to 96200311 135 - unclassified non-coding RNA gene predicted gene, 27605
Cpgi3625 11 96203258 to 96203837 579 CpG island CpG island 3625
Tssr104437 11 96203441 to 96203458 17 + TSS region transcription start site region 104437
Gm11538 11 96203454 to 96205480 2026 + lncRNA gene predicted gene 11538