Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:95052546-95872721

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199 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Itga3 11 95044474 to 95076801 32327 - protein coding gene integrin alpha 3
Tssr104344 11 95057084 to 95057094 10 + TSS region transcription start site region 104344
Tssr104345 11 95057099 to 95057119 20 + TSS region transcription start site region 104345
Tssr110251 11 95060931 to 95060962 31 - TSS region transcription start site region 110251
Tssr110252 11 95065906 to 95065918 12 - TSS region transcription start site region 110252
Tssr110253 11 95065937 to 95065962 25 - TSS region transcription start site region 110253
Cpgi3575 11 95075839 to 95077285 1446 CpG island CpG island 3575
Tssr110254 11 95076566 to 95076589 23 - TSS region transcription start site region 110254
Tssr3652 11 95076592 to 95076616 24 - TSS region transcription start site region 3652
Tssr110255 11 95076643 to 95076655 12 - TSS region transcription start site region 110255
Tssr110256 11 95076657 to 95076722 65 - TSS region transcription start site region 110256
Tssr110257 11 95076803 to 95076818 15 - TSS region transcription start site region 110257
Tssr104346 11 95076945 to 95076951 6 + TSS region transcription start site region 104346
Tssr110258 11 95080926 to 95080940 14 - TSS region transcription start site region 110258
Tssr110259 11 95088850 to 95088888 38 - TSS region transcription start site region 110259
Tssr104347 11 95097226 to 95097268 42 + TSS region transcription start site region 104347
Cpgi3576 11 95105628 to 95105801 173 CpG island CpG island 3576
Cpgi3577 11 95106588 to 95106942 354 CpG island CpG island 3577
Cpgi3578 11 95118220 to 95118456 236 CpG island CpG island 3578
Cpgi3579 11 95119808 to 95122141 2333 CpG island CpG island 3579
Tssr104348 11 95119820 to 95119833 13 + TSS region transcription start site region 104348
Tssr104349 11 95120110 to 95120125 15 + TSS region transcription start site region 104349
Dlx3 11 95120117 to 95125293 5176 + protein coding gene distal-less homeobox 3
Tssr104350 11 95124987 to 95124992 5 + TSS region transcription start site region 104350
Gm38659 11 95136248 to 95140139 3891 - lncRNA gene predicted gene, 38659
Dlx4 11 95140447 to 95145801 5354 - protein coding gene distal-less homeobox 4
Cpgi3580 11 95142881 to 95143496 615 CpG island CpG island 3580
Cpgi3581 11 95145034 to 95146460 1426 CpG island CpG island 3581
Dlx4os 11 95145053 to 95159047 13994 + antisense lncRNA gene distal-less homeobox 4, opposite strand
Tssr104351 11 95145094 to 95145114 20 + TSS region transcription start site region 104351
Cpgi3582 11 95150467 to 95151114 647 CpG island CpG island 3582
Gm11514 11 95176813 to 95177244 431 + pseudogene predicted gene 11514
Cpgi3583 11 95201894 to 95202653 759 CpG island CpG island 3583
Cpgi3584 11 95210723 to 95210959 236 CpG island CpG island 3584
Cpgi3585 11 95223276 to 95223908 632 CpG island CpG island 3585
Gm11515 11 95223290 to 95225632 2342 - lincRNA gene predicted gene 11515
Tssr110260 11 95225535 to 95225541 6 - TSS region transcription start site region 110260
Tssr110261 11 95225631 to 95225634 3 - TSS region transcription start site region 110261
Cpgi3586 11 95231993 to 95232187 194 CpG island CpG island 3586
Cpgi3587 11 95258546 to 95259959 1413 CpG island CpG island 3587
Tac4 11 95261529 to 95269262 7733 + protein coding gene tachykinin 4
Kat7 11 95274259 to 95310246 35987 - protein coding gene K(lysine) acetyltransferase 7
Tssr110262 11 95274756 to 95274811 55 - TSS region transcription start site region 110262
Cpgi3588 11 95309417 to 95310631 1214 CpG island CpG island 3588
Tssr110263 11 95309557 to 95309586 29 - TSS region transcription start site region 110263
Tssr110264 11 95309682 to 95309712 30 - TSS region transcription start site region 110264
Tssr110265 11 95309718 to 95309732 14 - TSS region transcription start site region 110265
Tssr104352 11 95309870 to 95309911 41 + TSS region transcription start site region 104352
Tssr110266 11 95310186 to 95310213 27 - TSS region transcription start site region 110266
Tssr104353 11 95310304 to 95310338 34 + TSS region transcription start site region 104353
Gm11520 11 95322885 to 95324594 1709 + antisense lncRNA gene predicted gene 11520
Gm11521 11 95336011 to 95337408 1397 - antisense lncRNA gene predicted gene 11521
Cpgi3589 11 95336881 to 95337752 871 CpG island CpG island 3589
Tssr104354 11 95337012 to 95337026 14 + TSS region transcription start site region 104354
Fam117a 11 95337018 to 95381872 44854 + protein coding gene family with sequence similarity 117, member A
Tssr104355 11 95339925 to 95339938 13 + TSS region transcription start site region 104355
Tssr104356 11 95340006 to 95340011 5 + TSS region transcription start site region 104356
Tssr104357 11 95352737 to 95352741 4 + TSS region transcription start site region 104357
Tssr110267 11 95356709 to 95356722 13 - TSS region transcription start site region 110267
Tssr110268 11 95356794 to 95356838 44 - TSS region transcription start site region 110268
Gm29477 11 95375525 to 95384507 8982 - antisense lncRNA gene predicted gene 29477
Tssr104358 11 95377592 to 95377608 16 + TSS region transcription start site region 104358
Cpgi3590 11 95384336 to 95385173 837 CpG island CpG island 3590
Tssr104359 11 95384662 to 95384682 20 + TSS region transcription start site region 104359
Tssr104360 11 95384885 to 95384918 33 + TSS region transcription start site region 104360
Slc35b1 11 95384891 to 95391776 6885 + protein coding gene solute carrier family 35, member B1
Tssr104361 11 95384919 to 95384944 25 + TSS region transcription start site region 104361
Tssr104362 11 95384946 to 95384957 11 + TSS region transcription start site region 104362
D11Lis3 11 95413118 to 95413304 186 DNA segment DNA segment, Chr 11, Lisse 3
Cpgi3591 11 95413686 to 95415046 1360 CpG island CpG island 3591
Tssr104363 11 95413786 to 95413815 29 + TSS region transcription start site region 104363
Tssr104364 11 95414078 to 95414130 52 + TSS region transcription start site region 104364
Spop 11 95414080 to 95493406 79326 + protein coding gene speckle-type POZ protein
Tssr104365 11 95440494 to 95440500 6 + TSS region transcription start site region 104365
D11Moh33 11 95441624 to 95441787 163 DNA segment DNA segment, Chr 11, KL Mohlke 33
Gm11522 11 95462546 to 95462721 175 - pseudogene predicted gene 11522
Tssr104366 11 95480465 to 95480473 8 + TSS region transcription start site region 104366
Nxph3 11 95509846 to 95514565 4719 - protein coding gene neurexophilin 3
Cpgi3592 11 95510950 to 95511280 330 CpG island CpG island 3592
Cpgi3593 11 95513386 to 95515257 1871 CpG island CpG island 3593
Tssr110269 11 95514541 to 95514594 53 - TSS region transcription start site region 110269
Tssr110270 11 95514695 to 95514707 12 - TSS region transcription start site region 110270
Cpgi3594 11 95520766 to 95521792 1026 CpG island CpG island 3594
D11Moh32 11 95530237 to 95530365 128 DNA segment DNA segment, Chr 11, KL Mohlke 32
Cpgi3595 11 95533713 to 95534186 473 CpG island CpG island 3595
Ngfr 11 95568818 to 95587698 18880 - protein coding gene nerve growth factor receptor (TNFR superfamily, member 16)
Mvwf 11 95568818 to 96285776 716958 QTL modifier of von Willebrand factor
Tssr110271 11 95569035 to 95569044 9 - TSS region transcription start site region 110271
Tssr104367 11 95569827 to 95569847 20 + TSS region transcription start site region 104367
Tssr110272 11 95569861 to 95569886 25 - TSS region transcription start site region 110272
Tssr110273 11 95569946 to 95569960 14 - TSS region transcription start site region 110273
Tssr110274 11 95569996 to 95570019 23 - TSS region transcription start site region 110274
Tssr110275 11 95570386 to 95570396 10 - TSS region transcription start site region 110275
Tssr110276 11 95574392 to 95574406 14 - TSS region transcription start site region 110276
Cpgi3596 11 95577745 to 95578483 738 CpG island CpG island 3596
Tssr110277 11 95581003 to 95581012 9 - TSS region transcription start site region 110277
Cpgi3597 11 95585220 to 95588006 2786 CpG island CpG island 3597
Tssr110278 11 95587691 to 95587707 16 - TSS region transcription start site region 110278
Tssr3653 11 95611281 to 95611287 6 + TSS region transcription start site region 3653
Gm11528 11 95622660 to 95629836 7176 + lincRNA gene predicted gene 11528
Cpgi3598 11 95645365 to 95645994 629 CpG island CpG island 3598
Phb 11 95666957 to 95680773 13816 + protein coding gene prohibitin
Tssr104368 11 95666989 to 95667005 16 + TSS region transcription start site region 104368
Gm26830 11 95669952 to 95672719 2767 + lincRNA gene predicted gene, 26830
Gm29873 11 95681206 to 95687272 6066 - lncRNA gene predicted gene, 29873
Gm9796 11 95696894 to 95699143 2249 - lincRNA gene predicted gene 9796
Zfp652os 11 95700106 to 95712754 12648 - antisense lncRNA gene zinc finger protein 652, opposite strand
Cpgi3599 11 95712142 to 95712310 168 CpG island CpG island 3599
Cpgi3600 11 95712549 to 95713834 1285 CpG island CpG island 3600
Tssr104369 11 95712668 to 95712704 36 + TSS region transcription start site region 104369
Tssr110279 11 95712758 to 95712768 10 - TSS region transcription start site region 110279
Tssr104370 11 95712868 to 95712911 43 + TSS region transcription start site region 104370
Tssr104371 11 95712959 to 95712980 21 + TSS region transcription start site region 104371
Tssr104372 11 95712984 to 95713030 46 + TSS region transcription start site region 104372
Tssr104373 11 95713118 to 95713137 19 + TSS region transcription start site region 104373
Tssr104374 11 95716259 to 95716272 13 + TSS region transcription start site region 104374
Tssr104375 11 95716429 to 95716439 10 + TSS region transcription start site region 104375
B130006D01Rik 11 95723587 to 95726710 3123 + unclassified gene RIKEN cDNA B130006D01 gene
D11Mit263 11 95741636 to 95741780 144 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 263
Tssr104376 11 95748394 to 95748401 7 + TSS region transcription start site region 104376
Tssr104377 11 95748549 to 95748556 7 + TSS region transcription start site region 104377
Tssr104378 11 95748582 to 95748602 20 + TSS region transcription start site region 104378
Tssr104379 11 95748642 to 95748687 45 + TSS region transcription start site region 104379
Zfp652 11 95749067 to 95764715 15648 + protein coding gene zinc finger protein 652
Tssr104380 11 95751360 to 95751364 4 + TSS region transcription start site region 104380
Polr2k-ps 11 95761491 to 95761665 174 + pseudogene polymerase (RNA) II (DNA directed) polypeptide K, pseudogene
Tssr104381 11 95763618 to 95763631 13 + TSS region transcription start site region 104381
Tssr104382 11 95768316 to 95768357 41 + TSS region transcription start site region 104382
Tssr104383 11 95769753 to 95769757 4 + TSS region transcription start site region 104383
Gm38957 11 95776849 to 95789497 12648 + lncRNA gene predicted gene, 38957
D11Moh3 11 95777077 to 95777286 209 DNA segment DNA segment, Chr 11, KL Mohlke 3
Tssr104384 11 95777979 to 95778017 38 + TSS region transcription start site region 104384
Tssr104385 11 95778019 to 95778046 27 + TSS region transcription start site region 104385
Tssr104386 11 95778157 to 95778179 22 + TSS region transcription start site region 104386
D11Moh5 11 95792110 to 95792296 186 DNA segment DNA segment, Chr 11, KL Mohlke 5
Gm29933 11 95795228 to 95808604 13376 - lncRNA gene predicted gene, 29933
Cpgi3601 11 95796415 to 95797207 792 CpG island CpG island 3601
Tssr110280 11 95799814 to 95799816 2 - TSS region transcription start site region 110280
Tssr110281 11 95808596 to 95808619 23 - TSS region transcription start site region 110281
Tssr104387 11 95808752 to 95808765 13 + TSS region transcription start site region 104387
Cpgi3602 11 95823643 to 95825243 1600 CpG island CpG island 3602
Gm38958 11 95823955 to 95824580 625 - protein coding gene predicted gene, 38958
Tssr110282 11 95824405 to 95824416 11 - TSS region transcription start site region 110282
Tssr104388 11 95824469 to 95824512 43 + TSS region transcription start site region 104388
Phospho1 11 95824500 to 95832140 7640 + protein coding gene phosphatase, orphan 1
Tssr104389 11 95824513 to 95824549 36 + TSS region transcription start site region 104389
Tssr104390 11 95824578 to 95824593 15 + TSS region transcription start site region 104390
Tssr104391 11 95825135 to 95825149 14 + TSS region transcription start site region 104391
Tssr104392 11 95825159 to 95825179 20 + TSS region transcription start site region 104392
Tssr104393 11 95825221 to 95825240 19 + TSS region transcription start site region 104393
D11Moh6 11 95825499 to 95825727 228 DNA segment DNA segment, Chr 11, KL Mohlke 6
Abi3 11 95830074 to 95842476 12402 - protein coding gene ABI gene family, member 3
Cpgi3603 11 95830211 to 95831565 1354 CpG island CpG island 3603
Tssr3654 11 95830522 to 95830544 22 + TSS region transcription start site region 3654
Tssr104394 11 95830753 to 95830768 15 + TSS region transcription start site region 104394
Tssr104395 11 95831324 to 95831337 13 + TSS region transcription start site region 104395
Tssr104396 11 95831361 to 95831373 12 + TSS region transcription start site region 104396
Tssr104397 11 95831524 to 95831538 14 + TSS region transcription start site region 104397
Tssr110283 11 95831801 to 95831823 22 - TSS region transcription start site region 110283
Cpgi3604 11 95833671 to 95834623 952 CpG island CpG island 3604
Tssr110284 11 95834116 to 95834131 15 - TSS region transcription start site region 110284
Tssr110285 11 95834135 to 95834149 14 - TSS region transcription start site region 110285
Tssr110286 11 95834168 to 95834180 12 - TSS region transcription start site region 110286
Tssr110287 11 95835345 to 95835352 7 - TSS region transcription start site region 110287
Tssr110288 11 95837203 to 95837219 16 - TSS region transcription start site region 110288
Tssr104398 11 95837264 to 95837285 21 + TSS region transcription start site region 104398
Tssr110289 11 95837577 to 95837584 7 - TSS region transcription start site region 110289
Tssr104399 11 95837793 to 95837795 2 + TSS region transcription start site region 104399
Tssr110290 11 95842151 to 95842168 17 - TSS region transcription start site region 110290
Gngt2 11 95842219 to 95845734 3515 + protein coding gene guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
Tssr104400 11 95842230 to 95842241 11 + TSS region transcription start site region 104400
Tssr104401 11 95842248 to 95842270 22 + TSS region transcription start site region 104401
Tssr104402 11 95842283 to 95842307 24 + TSS region transcription start site region 104402
Tssr104403 11 95842334 to 95842345 11 + TSS region transcription start site region 104403
Tssr110291 11 95842432 to 95842450 18 - TSS region transcription start site region 110291
Tssr110292 11 95842454 to 95842483 29 - TSS region transcription start site region 110292
Tssr104404 11 95842668 to 95842704 36 + TSS region transcription start site region 104404
Tssr104405 11 95842706 to 95842721 15 + TSS region transcription start site region 104405
Tssr104406 11 95842724 to 95842739 15 + TSS region transcription start site region 104406
Tssr104407 11 95843142 to 95843158 16 + TSS region transcription start site region 104407
Tssr104408 11 95843226 to 95843239 13 + TSS region transcription start site region 104408
Tssr104409 11 95843593 to 95843629 36 + TSS region transcription start site region 104409
Tssr104410 11 95843634 to 95843644 10 + TSS region transcription start site region 104410
Tssr104411 11 95843646 to 95843689 43 + TSS region transcription start site region 104411
Tssr104412 11 95843804 to 95843823 19 + TSS region transcription start site region 104412
Tssr104413 11 95843836 to 95843856 20 + TSS region transcription start site region 104413
Tssr104414 11 95843866 to 95843875 9 + TSS region transcription start site region 104414
Gm38959 11 95854987 to 95858327 3340 - lncRNA gene predicted gene, 38959
Gm11527 11 95858162 to 95859174 1012 - lincRNA gene predicted gene 11527
Cpgi3605 11 95858519 to 95859911 1392 CpG island CpG island 3605
Tssr104415 11 95858854 to 95858880 26 + TSS region transcription start site region 104415
4833417C18Rik 11 95858865 to 95861044 2179 + lncRNA gene RIKEN cDNA 4833417C18 gene
Tssr104416 11 95858881 to 95858901 20 + TSS region transcription start site region 104416
Tssr104417 11 95858905 to 95858932 27 + TSS region transcription start site region 104417
n-TQttg6 11 95859172 to 95859243 71 - tRNA gene nuclear encoded tRNA glutamine 6 (anticodon TTG)
Tssr110293 11 95864640 to 95864648 8 - TSS region transcription start site region 110293
B4galnt2 11 95865943 to 95914891 48948 - protein coding gene beta-1,4-N-acetyl-galactosaminyl transferase 2
Cpgi3606 11 95866564 to 95866975 411 CpG island CpG island 3606
Gm11534 11 95869154 to 95876380 7226 + antisense lncRNA gene predicted gene 11534