Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:95023290-95425632

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Samd14 11 95009879 to 95026087 16208 + protein coding gene sterile alpha motif domain containing 14
Cpgi3573 11 95024596 to 95024820 224 CpG island CpG island 3573
Pdk2 11 95026258 to 95041354 15096 - protein coding gene pyruvate dehydrogenase kinase, isoenzyme 2
Tssr110240 11 95026699 to 95026714 15 - TSS region transcription start site region 110240
Tssr110241 11 95028742 to 95028770 28 - TSS region transcription start site region 110241
Gm11513 11 95032759 to 95038283 5524 + antisense lncRNA gene predicted gene 11513
Tssr110242 11 95032988 to 95032993 5 - TSS region transcription start site region 110242
Tssr110243 11 95040506 to 95040543 37 - TSS region transcription start site region 110243
Tssr110244 11 95040548 to 95040565 17 - TSS region transcription start site region 110244
Tssr110245 11 95040579 to 95040610 31 - TSS region transcription start site region 110245
Cpgi3574 11 95040640 to 95041710 1070 CpG island CpG island 3574
Tssr104343 11 95040722 to 95040735 13 + TSS region transcription start site region 104343
Tssr110246 11 95041266 to 95041271 5 - TSS region transcription start site region 110246
Tssr110247 11 95041276 to 95041297 21 - TSS region transcription start site region 110247
Tssr110248 11 95041308 to 95041330 22 - TSS region transcription start site region 110248
Tssr110249 11 95041335 to 95041374 39 - TSS region transcription start site region 110249
Tssr110250 11 95041391 to 95041407 16 - TSS region transcription start site region 110250
Itga3 11 95044474 to 95076801 32327 - protein coding gene integrin alpha 3
D11Lis2 11 95052290 to 95052442 152 DNA segment DNA segment, Chr 11, Lisse 2
Tssr104344 11 95057084 to 95057094 10 + TSS region transcription start site region 104344
Tssr104345 11 95057099 to 95057119 20 + TSS region transcription start site region 104345
Tssr110251 11 95060931 to 95060962 31 - TSS region transcription start site region 110251
Tssr110252 11 95065906 to 95065918 12 - TSS region transcription start site region 110252
Tssr110253 11 95065937 to 95065962 25 - TSS region transcription start site region 110253
Cpgi3575 11 95075839 to 95077285 1446 CpG island CpG island 3575
Tssr110254 11 95076566 to 95076589 23 - TSS region transcription start site region 110254
Tssr3652 11 95076592 to 95076616 24 - TSS region transcription start site region 3652
Tssr110255 11 95076643 to 95076655 12 - TSS region transcription start site region 110255
Tssr110256 11 95076657 to 95076722 65 - TSS region transcription start site region 110256
Tssr110257 11 95076803 to 95076818 15 - TSS region transcription start site region 110257
Tssr104346 11 95076945 to 95076951 6 + TSS region transcription start site region 104346
Tssr110258 11 95080926 to 95080940 14 - TSS region transcription start site region 110258
Tssr110259 11 95088850 to 95088888 38 - TSS region transcription start site region 110259
Tssr104347 11 95097226 to 95097268 42 + TSS region transcription start site region 104347
Cpgi3576 11 95105628 to 95105801 173 CpG island CpG island 3576
Cpgi3577 11 95106588 to 95106942 354 CpG island CpG island 3577
Cpgi3578 11 95118220 to 95118456 236 CpG island CpG island 3578
Cpgi3579 11 95119808 to 95122141 2333 CpG island CpG island 3579
Tssr104348 11 95119820 to 95119833 13 + TSS region transcription start site region 104348
Tssr104349 11 95120110 to 95120125 15 + TSS region transcription start site region 104349
Dlx3 11 95120117 to 95125293 5176 + protein coding gene distal-less homeobox 3
Tssr104350 11 95124987 to 95124992 5 + TSS region transcription start site region 104350
Gm38659 11 95136248 to 95140139 3891 - lncRNA gene predicted gene, 38659
Dlx4 11 95140447 to 95145801 5354 - protein coding gene distal-less homeobox 4
Cpgi3580 11 95142881 to 95143496 615 CpG island CpG island 3580
Cpgi3581 11 95145034 to 95146460 1426 CpG island CpG island 3581
Dlx4os 11 95145053 to 95159047 13994 + antisense lncRNA gene distal-less homeobox 4, opposite strand
Tssr104351 11 95145094 to 95145114 20 + TSS region transcription start site region 104351
Cpgi3582 11 95150467 to 95151114 647 CpG island CpG island 3582
Gm11514 11 95176813 to 95177244 431 + pseudogene predicted gene 11514
Cpgi3583 11 95201894 to 95202653 759 CpG island CpG island 3583
Cpgi3584 11 95210723 to 95210959 236 CpG island CpG island 3584
Cpgi3585 11 95223276 to 95223908 632 CpG island CpG island 3585
Gm11515 11 95223290 to 95225632 2342 - lincRNA gene predicted gene 11515
Tssr110260 11 95225535 to 95225541 6 - TSS region transcription start site region 110260
Tssr110261 11 95225631 to 95225634 3 - TSS region transcription start site region 110261
Cpgi3586 11 95231993 to 95232187 194 CpG island CpG island 3586
Cpgi3587 11 95258546 to 95259959 1413 CpG island CpG island 3587
Tac4 11 95261529 to 95269262 7733 + protein coding gene tachykinin 4
Kat7 11 95274259 to 95310246 35987 - protein coding gene K(lysine) acetyltransferase 7
Tssr110262 11 95274756 to 95274811 55 - TSS region transcription start site region 110262
Cpgi3588 11 95309417 to 95310631 1214 CpG island CpG island 3588
Tssr110263 11 95309557 to 95309586 29 - TSS region transcription start site region 110263
Tssr110264 11 95309682 to 95309712 30 - TSS region transcription start site region 110264
Tssr110265 11 95309718 to 95309732 14 - TSS region transcription start site region 110265
Tssr104352 11 95309870 to 95309911 41 + TSS region transcription start site region 104352
Tssr110266 11 95310186 to 95310213 27 - TSS region transcription start site region 110266
Tssr104353 11 95310304 to 95310338 34 + TSS region transcription start site region 104353
Gm11520 11 95322885 to 95324594 1709 + antisense lncRNA gene predicted gene 11520
Gm11521 11 95336011 to 95337408 1397 - antisense lncRNA gene predicted gene 11521
Cpgi3589 11 95336881 to 95337752 871 CpG island CpG island 3589
Tssr104354 11 95337012 to 95337026 14 + TSS region transcription start site region 104354
Fam117a 11 95337018 to 95381872 44854 + protein coding gene family with sequence similarity 117, member A
Tssr104355 11 95339925 to 95339938 13 + TSS region transcription start site region 104355
Tssr104356 11 95340006 to 95340011 5 + TSS region transcription start site region 104356
Tssr104357 11 95352737 to 95352741 4 + TSS region transcription start site region 104357
Tssr110267 11 95356709 to 95356722 13 - TSS region transcription start site region 110267
Tssr110268 11 95356794 to 95356838 44 - TSS region transcription start site region 110268
Gm29477 11 95375525 to 95384507 8982 - antisense lncRNA gene predicted gene 29477
Tssr104358 11 95377592 to 95377608 16 + TSS region transcription start site region 104358
Cpgi3590 11 95384336 to 95385173 837 CpG island CpG island 3590
Tssr104359 11 95384662 to 95384682 20 + TSS region transcription start site region 104359
Tssr104360 11 95384885 to 95384918 33 + TSS region transcription start site region 104360
Slc35b1 11 95384891 to 95391776 6885 + protein coding gene solute carrier family 35, member B1
Tssr104361 11 95384919 to 95384944 25 + TSS region transcription start site region 104361
Tssr104362 11 95384946 to 95384957 11 + TSS region transcription start site region 104362
D11Lis3 11 95413118 to 95413304 186 DNA segment DNA segment, Chr 11, Lisse 3
Cpgi3591 11 95413686 to 95415046 1360 CpG island CpG island 3591
Tssr104363 11 95413786 to 95413815 29 + TSS region transcription start site region 104363
Tssr104364 11 95414078 to 95414130 52 + TSS region transcription start site region 104364
Spop 11 95414080 to 95493406 79326 + protein coding gene speckle-type POZ protein